Pogostemon stellatus chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
tRNA-His (GUG) · NC_031434.1 · 2–76 bp · −
psbA · NC_031434.1 · 282–1,340 bp · −
tRNA-Lys (UUU) · NC_031434.1 · 1,573–4,158 bp · −
matK · NC_031434.1 · 1,872–3,407 bp · −
rps16 · NC_031434.1 · 5,035–6,178 bp · −
tRNA-Gln (UUG) · NC_031434.1 · 7,280–7,351 bp · −
tRNA-Ser (GCU) · NC_031434.1 · 8,451–8,538 bp · −
atpA · NC_031434.1 · 10,325–11,848 bp · −
atpF · NC_031434.1 · 11,938–13,215 bp · −
atpH · NC_031434.1 · 13,573–13,818 bp · −
atpI · NC_031434.1 · 14,759–15,502 bp · −
rps2 · NC_031434.1 · 15,716–16,426 bp · −
rpoC2 · NC_031434.1 · 16,649–20,809 bp · −
rpoC1 · NC_031434.1 · 20,964–23,811 bp · −
rpoB · NC_031434.1 · 23,838–27,050 bp · −
psbM · NC_031434.1 · 29,375–29,479 bp · −
tRNA-Asp (GUC) · NC_031434.1 · 30,002–30,075 bp · −
tRNA-Tyr (GUA) · NC_031434.1 · 30,190–30,273 bp · −
tRNA-Glu (UUC) · NC_031434.1 · 30,333–30,405 bp · −
tRNA-Ser (UGA) · NC_031434.1 · 34,852–34,944 bp · −
tRNA-fM (CAU) · NC_031434.1 · 35,926–35,999 bp · −
rps14 · NC_031434.1 · 36,149–36,451 bp · −
psaB · NC_031434.1 · 36,579–38,783 bp · −
psaA · NC_031434.1 · 38,809–41,061 bp · −
ycf3 · NC_031434.1 · 41,780–43,722 bp · −
rps4 · NC_031434.1 · 44,969–45,574 bp · −
tRNA-Thr (UGU) · NC_031434.1 · 45,967–46,039 bp · −
ndhJ · NC_031434.1 · 48,247–48,723 bp · −
ndhK · NC_031434.1 · 48,825–49,502 bp · −
ndhC · NC_031434.1 · 49,557–49,919 bp · −
tRNA-Val (UAC) · NC_031434.1 · 50,699–51,356 bp · −
atpE · NC_031434.1 · 51,843–52,244 bp · −
atpB · NC_031434.1 · 52,241–53,737 bp · −
psbJ · NC_031434.1 · 63,338–63,460 bp · −
psbL · NC_031434.1 · 63,603–63,719 bp · −
psbF · NC_031434.1 · 63,743–63,862 bp · −
psbE · NC_031434.1 · 63,877–64,128 bp · −
tRNA-Trp (CCA) · NC_031434.1 · 65,557–65,630 bp · −
tRNA-Pro (UGG) · NC_031434.1 · 65,797–65,870 bp · −
rpl20 · NC_031434.1 · 67,652–68,038 bp · −
rps12 · NC_031434.1 · 68,802–68,915 bp · −
rps12 · NC_031434.1 · 96,266–97,059 bp · −
clpP · NC_031434.1 · 69,043–70,989 bp · −
psbN · NC_031434.1 · 73,319–73,450 bp · −
rpoA · NC_031434.1 · 76,865–77,881 bp · −
rps11 · NC_031434.1 · 77,953–78,369 bp · −
rpl36 · NC_031434.1 · 78,472–78,585 bp · −
infA · NC_031434.1 · 78,681–78,914 bp · −
rps8 · NC_031434.1 · 79,033–79,446 bp · −
rpl14 · NC_031434.1 · 79,621–79,989 bp · −
rpl16 · NC_031434.1 · 80,122–81,446 bp · −
rps3 · NC_031434.1 · 81,599–82,261 bp · −
rpl22 · NC_031434.1 · 82,246–82,716 bp · −
rps19 · NC_031434.1 · 82,776–83,054 bp · −
rpl2 · NC_031434.1 · 83,109–84,596 bp · −
rpl23 · NC_031434.1 · 84,615–84,896 bp · −
tRNA-His (CAU) · NC_031434.1 · 85,062–85,135 bp · −
tRNA-Leu (CAA) · NC_031434.1 · 92,625–92,705 bp · −
ndhB · NC_031434.1 · 93,259–95,470 bp · −
rps7 · NC_031434.1 · 95,745–96,212 bp · −
tRNA-Asn (GUU) · NC_031434.1 · 107,170–107,241 bp · −
ndhF · NC_031434.1 · 108,640–110,856 bp · −
ndhD · NC_031434.1 · 113,578–115,080 bp · −
psaC · NC_031434.1 · 115,198–115,443 bp · −
ndhE · NC_031434.1 · 115,696–116,001 bp · −
ndhG · NC_031434.1 · 116,218–116,748 bp · −
ndhI · NC_031434.1 · 117,061–117,567 bp · −
ndhA · NC_031434.1 · 117,663–119,799 bp · −
ndhH · NC_031434.1 · 119,801–120,982 bp · −
rps15 · NC_031434.1 · 121,093–121,365 bp · −
ycf1 · NC_031434.1 · 121,739–127,261 bp · −
tRNA-Arg (ACG) · NC_031434.1 · 128,231–128,304 bp · −
rrn5 · NC_031434.1 · 128,551–128,671 bp · −
rrn4.5 · NC_031434.1 · 128,923–129,025 bp · −
rrn23 · NC_031434.1 · 129,124–131,940 bp · −
tRNA-Ala (UGC) · NC_031434.1 · 132,124–133,002 bp · −
tRNA-Ile (GAU) · NC_031434.1 · 133,071–134,077 bp · −
rrn16 · NC_031434.1 · 135,368–135,757 bp · −
tRNA-Val (GAC) · NC_031434.1 · 136,085–136,156 bp · −
ycf15 · NC_031434.1 · 142,468–142,617 bp · −
ycf2 · NC_031434.1 · 142,759–149,613 bp · −
psbK · NC_031434.1 · 7,677–7,862 bp · +
psbI · NC_031434.1 · 8,219–8,329 bp · +
tRNA-Gly (UCC) · NC_031434.1 · 9,201–9,959 bp · +
tRNA-Arg (UCU) · NC_031434.1 · 10,153–10,227 bp · +
tRNA-Cys (GCA) · NC_031434.1 · 28,019–28,089 bp · +
petN · NC_031434.1 · 28,306–28,395 bp · +
tRNA-Thr (GGU) · NC_031434.1 · 30,983–31,054 bp · +
psbD · NC_031434.1 · 32,183–33,244 bp · +
psbC · NC_031434.1 · 33,192–34,613 bp · +
psbZ · NC_031434.1 · 35,247–35,435 bp · +
tRNA-Gly (GCC) · NC_031434.1 · 35,701–35,771 bp · +
tRNA-Ser (GGA) · NC_031434.1 · 44,618–44,704 bp · +
tRNA-Leu (UAA) · NC_031434.1 · 46,686–47,252 bp · +
tRNA-Phe (GAA) · NC_031434.1 · 47,553–47,625 bp · +
tRNA-Met (CAU) · NC_031434.1 · 51,548–51,620 bp · +
rbcL · NC_031434.1 · 54,523–55,983 bp · +
accD · NC_031434.1 · 56,715–58,205 bp · +
psaI · NC_031434.1 · 58,896–59,006 bp · +
ycf4 · NC_031434.1 · 59,450–60,004 bp · +
cemA · NC_031434.1 · 60,554–61,243 bp · +
petA · NC_031434.1 · 61,455–62,417 bp · +
petL · NC_031434.1 · 65,056–65,151 bp · +
petG · NC_031434.1 · 65,327–65,440 bp · +
psaJ · NC_031434.1 · 66,136–66,270 bp · +
rpl33 · NC_031434.1 · 66,751–66,951 bp · +
rps18 · NC_031434.1 · 67,135–67,440 bp · +
rps12 · NC_031434.1 · 137,778–138,571 bp · +
psbB · NC_031434.1 · 71,438–72,964 bp · +
psbT · NC_031434.1 · 73,145–73,252 bp · +
psbH · NC_031434.1 · 73,554–73,775 bp · +
petB · NC_031434.1 · 73,900–75,287 bp · +
petD · NC_031434.1 · 75,474–76,713 bp · +
ycf2 · NC_031434.1 · 85,224–92,078 bp · +
ycf15 · NC_031434.1 · 92,220–92,369 bp · +
tRNA-Val (GAC) · NC_031434.1 · 98,681–98,752 bp · +
rrn16 · NC_031434.1 · 99,080–99,469 bp · +
tRNA-Ile (GAU) · NC_031434.1 · 100,760–101,766 bp · +
tRNA-Ala (UGC) · NC_031434.1 · 101,835–102,713 bp · +
rrn23 · NC_031434.1 · 102,897–105,713 bp · +
rrn4.5 · NC_031434.1 · 105,812–105,914 bp · +
rrn5 · NC_031434.1 · 106,166–106,286 bp · +
tRNA-Arg (ACG) · NC_031434.1 · 106,533–106,606 bp · +
ycf1 · NC_031434.1 · 107,576–108,656 bp · +
rpl32 · NC_031434.1 · 111,349–111,519 bp · +
tRNA-Leu (UAG) · NC_031434.1 · 112,243–112,322 bp · +
ccsA · NC_031434.1 · 112,406–113,404 bp · +
tRNA-Asn (GUU) · NC_031434.1 · 127,596–127,667 bp · +
rps7 · NC_031434.1 · 138,625–139,092 bp · +
ndhB · NC_031434.1 · 139,367–141,578 bp · +
tRNA-Leu (CAA) · NC_031434.1 · 142,132–142,212 bp · +
tRNA-His (CAU) · NC_031434.1 · 149,702–149,775 bp · +
rpl23 · NC_031434.1 · 149,941–150,222 bp · +
rpl2 · NC_031434.1 · 150,241–151,728 bp · +
rps19 · NC_031434.1 · 151,783–151,824 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Pogostemon stellatus
ANNOTATED PLASTOME
NC_031434.1
151,824 bp · 134 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37956 75912 113868 151824 bp
Forward strand 5′ → 3′
psbK psbI tRNA-Gly (UCC) tRNA-Arg (UCU) tRNA-Cys (GCA) petN tRNA-Thr (GGU) psbD psbC psbZ tRNA-Gly (GCC) tRNA-Ser (GGA) tRNA-Leu (UAA) tRNA-Phe (GAA) tRNA-Met (CAU) rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 tRNA-Val (GAC) rrn16 tRNA-Ile (GAU) tRNA-Ala (UGC) rrn23 rrn4.5 rrn5 tRNA-Arg (ACG) ycf1 rpl32 tRNA-Leu (UAG) ccsA tRNA-Asn (GUU) rps12 rps7 ndhB tRNA-Leu (CAA) tRNA-His (CAU) rpl23 rpl2 rps19
tRNA-His (GUG) psbA tRNA-Lys (UUU) matK rps16 tRNA-Gln (UUG) tRNA-Ser (GCU) atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM tRNA-Asp (GUC) tRNA-Tyr (GUA) tRNA-Glu (UUC) tRNA-Ser (UGA) tRNA-fM (CAU) rps14 psaB psaA ycf3 rps4 tRNA-Thr (UGU) ndhJ ndhK ndhC tRNA-Val (UAC) atpE atpB psbJ psbL psbF psbE tRNA-Trp (CCA) tRNA-Pro (UGG) rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 tRNA-His (CAU) tRNA-Leu (CAA) ndhB rps7 rps12 tRNA-Asn (GUU) ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 tRNA-Arg (ACG) rrn5 rrn4.5 rrn23 tRNA-Ala (UGC) tRNA-Ile (GAU) rrn16 tRNA-Val (GAC) ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
135 local segments
Gene Type Group Strand Start End Length
tRNA-His (GUG) gene − 2 76 75 Locate
psbA gene − 282 1340 1059 Locate
tRNA-Lys (UUU) gene − 1573 4158 2586 Locate
matK gene − 1872 3407 1536 Locate
rps16 gene − 5035 6178 1144 Locate
tRNA-Gln (UUG) gene − 7280 7351 72 Locate
psbK gene + 7677 7862 186 Locate
psbI gene + 8219 8329 111 Locate
tRNA-Ser (GCU) gene − 8451 8538 88 Locate
tRNA-Gly (UCC) gene + 9201 9959 759 Locate
tRNA-Arg (UCU) gene + 10153 10227 75 Locate
atpA gene − 10325 11848 1524 Locate
atpF gene − 11938 13215 1278 Locate
atpH gene − 13573 13818 246 Locate
atpI gene − 14759 15502 744 Locate
rps2 gene − 15716 16426 711 Locate
rpoC2 gene − 16649 20809 4161 Locate
rpoC1 gene − 20964 23811 2848 Locate
rpoB gene − 23838 27050 3213 Locate
tRNA-Cys (GCA) gene + 28019 28089 71 Locate
petN gene + 28306 28395 90 Locate
psbM gene − 29375 29479 105 Locate
tRNA-Asp (GUC) gene − 30002 30075 74 Locate
tRNA-Tyr (GUA) gene − 30190 30273 84 Locate
tRNA-Glu (UUC) gene − 30333 30405 73 Locate
tRNA-Thr (GGU) gene + 30983 31054 72 Locate
psbD gene + 32183 33244 1062 Locate
psbC gene + 33192 34613 1422 Locate
tRNA-Ser (UGA) gene − 34852 34944 93 Locate
psbZ gene + 35247 35435 189 Locate
tRNA-Gly (GCC) gene + 35701 35771 71 Locate
tRNA-fM (CAU) gene − 35926 35999 74 Locate
rps14 gene − 36149 36451 303 Locate
psaB gene − 36579 38783 2205 Locate
psaA gene − 38809 41061 2253 Locate
ycf3 gene − 41780 43722 1943 Locate
tRNA-Ser (GGA) gene + 44618 44704 87 Locate
rps4 gene − 44969 45574 606 Locate
tRNA-Thr (UGU) gene − 45967 46039 73 Locate
tRNA-Leu (UAA) gene + 46686 47252 567 Locate
tRNA-Phe (GAA) gene + 47553 47625 73 Locate
ndhJ gene − 48247 48723 477 Locate
ndhK gene − 48825 49502 678 Locate
ndhC gene − 49557 49919 363 Locate
tRNA-Val (UAC) gene − 50699 51356 658 Locate
tRNA-Met (CAU) gene + 51548 51620 73 Locate
atpE gene − 51843 52244 402 Locate
atpB gene − 52241 53737 1497 Locate
rbcL gene + 54523 55983 1461 Locate
accD gene + 56715 58205 1491 Locate
psaI gene + 58896 59006 111 Locate
ycf4 gene + 59450 60004 555 Locate
cemA gene + 60554 61243 690 Locate
petA gene + 61455 62417 963 Locate
psbJ gene − 63338 63460 123 Locate
psbL gene − 63603 63719 117 Locate
psbF gene − 63743 63862 120 Locate
psbE gene − 63877 64128 252 Locate
petL gene + 65056 65151 96 Locate
petG gene + 65327 65440 114 Locate
tRNA-Trp (CCA) gene − 65557 65630 74 Locate
tRNA-Pro (UGG) gene − 65797 65870 74 Locate
psaJ gene + 66136 66270 135 Locate
rpl33 gene + 66751 66951 201 Locate
rps18 gene + 67135 67440 306 Locate
rpl20 gene − 67652 68038 387 Locate
rps12 gene − 68802 68915 114 Locate
clpP gene − 69043 70989 1947 Locate
psbB gene + 71438 72964 1527 Locate
psbT gene + 73145 73252 108 Locate
psbN gene − 73319 73450 132 Locate
psbH gene + 73554 73775 222 Locate
petB gene + 73900 75287 1388 Locate
petD gene + 75474 76713 1240 Locate
rpoA gene − 76865 77881 1017 Locate
rps11 gene − 77953 78369 417 Locate
rpl36 gene − 78472 78585 114 Locate
infA gene − 78681 78914 234 Locate
rps8 gene − 79033 79446 414 Locate
rpl14 gene − 79621 79989 369 Locate
rpl16 gene − 80122 81446 1325 Locate
rps3 gene − 81599 82261 663 Locate
rpl22 gene − 82246 82716 471 Locate
rps19 gene − 82776 83054 279 Locate
rpl2 gene − 83109 84596 1488 Locate
rpl23 gene − 84615 84896 282 Locate
tRNA-His (CAU) gene − 85062 85135 74 Locate
ycf2 gene + 85224 92078 6855 Locate
ycf15 gene + 92220 92369 150 Locate
tRNA-Leu (CAA) gene − 92625 92705 81 Locate
ndhB gene − 93259 95470 2212 Locate
rps7 gene − 95745 96212 468 Locate
rps12 gene − 96266 97059 794 Locate
tRNA-Val (GAC) gene + 98681 98752 72 Locate
rrn16 gene + 99080 99469 390 Locate
tRNA-Ile (GAU) gene + 100760 101766 1007 Locate
tRNA-Ala (UGC) gene + 101835 102713 879 Locate
rrn23 gene + 102897 105713 2817 Locate
rrn4.5 gene + 105812 105914 103 Locate
rrn5 gene + 106166 106286 121 Locate
tRNA-Arg (ACG) gene + 106533 106606 74 Locate
tRNA-Asn (GUU) gene − 107170 107241 72 Locate
ycf1 gene + 107576 108656 1081 Locate
ndhF gene − 108640 110856 2217 Locate
rpl32 gene + 111349 111519 171 Locate
tRNA-Leu (UAG) gene + 112243 112322 80 Locate
ccsA gene + 112406 113404 999 Locate
ndhD gene − 113578 115080 1503 Locate
psaC gene − 115198 115443 246 Locate
ndhE gene − 115696 116001 306 Locate
ndhG gene − 116218 116748 531 Locate
ndhI gene − 117061 117567 507 Locate
ndhA gene − 117663 119799 2137 Locate
ndhH gene − 119801 120982 1182 Locate
rps15 gene − 121093 121365 273 Locate
ycf1 gene − 121739 127261 5523 Locate
tRNA-Asn (GUU) gene + 127596 127667 72 Locate
tRNA-Arg (ACG) gene − 128231 128304 74 Locate
rrn5 gene − 128551 128671 121 Locate
rrn4.5 gene − 128923 129025 103 Locate
rrn23 gene − 129124 131940 2817 Locate
tRNA-Ala (UGC) gene − 132124 133002 879 Locate
tRNA-Ile (GAU) gene − 133071 134077 1007 Locate
rrn16 gene − 135368 135757 390 Locate
tRNA-Val (GAC) gene − 136085 136156 72 Locate
rps12 gene + 137778 138571 794 Locate
rps7 gene + 138625 139092 468 Locate
ndhB gene + 139367 141578 2212 Locate
tRNA-Leu (CAA) gene + 142132 142212 81 Locate
ycf15 gene − 142468 142617 150 Locate
ycf2 gene − 142759 149613 6855 Locate
tRNA-His (CAU) gene + 149702 149775 74 Locate
rpl23 gene + 149941 150222 282 Locate
rpl2 gene + 150241 151728 1488 Locate
rps19 gene + 151783 151824 42 Locate
Status Available
Accession NC_031434.1
Length 151,824 bp
GC content 38.2%
Annotated genes 134
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 27 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 0
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources