Premna microphylla chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · NC_026291.1 · 11–84 bp · −
psbA · NC_026291.1 · 389–1,447 bp · −
trnK-UUU · NC_026291.1 · 1,722–4,337 bp · −
matK · NC_026291.1 · 2,053–3,597 bp · −
rps16 · NC_026291.1 · 5,246–6,397 bp · −
trnQ-UUG · NC_026291.1 · 7,634–7,705 bp · −
trnS-GCU · NC_026291.1 · 8,951–9,038 bp · −
atpA · NC_026291.1 · 10,919–12,442 bp · −
atpF · NC_026291.1 · 12,535–13,808 bp · −
atpH · NC_026291.1 · 14,177–14,422 bp · −
atpI · NC_026291.1 · 15,448–16,191 bp · −
rps2 · NC_026291.1 · 16,422–17,132 bp · −
rpoC2 · NC_026291.1 · 17,353–21,537 bp · −
rpoC1 · NC_026291.1 · 21,699–24,582 bp · −
rpoB · NC_026291.1 · 24,609–27,821 bp · −
psbM · NC_026291.1 · 31,021–31,125 bp · −
trnD-GUC · NC_026291.1 · 31,645–31,718 bp · −
trnY-GUA · NC_026291.1 · 31,841–31,924 bp · −
trnE-UUC · NC_026291.1 · 31,988–32,060 bp · −
trnS-UGA · NC_026291.1 · 36,766–36,858 bp · −
trnfM-CAU · NC_026291.1 · 37,918–37,991 bp · −
rps14 · NC_026291.1 · 38,143–38,445 bp · −
psaB · NC_026291.1 · 38,568–40,772 bp · −
psaA · NC_026291.1 · 40,798–43,050 bp · −
ycf3 · NC_026291.1 · 43,827–45,828 bp · −
rps4 · NC_026291.1 · 47,050–47,655 bp · −
trnT-UGU · NC_026291.1 · 48,016–48,088 bp · −
ndhJ · NC_026291.1 · 50,460–50,936 bp · −
ndhK · NC_026291.1 · 51,037–51,714 bp · −
ndhC · NC_026291.1 · 51,766–52,128 bp · −
trnV-UAC · NC_026291.1 · 53,210–53,869 bp · −
atpE · NC_026291.1 · 54,331–54,732 bp · −
atpB · NC_026291.1 · 54,729–56,225 bp · −
psbJ · NC_026291.1 · 66,164–66,286 bp · −
psbL · NC_026291.1 · 66,420–66,536 bp · −
psbF · NC_026291.1 · 66,560–66,679 bp · −
psbE · NC_026291.1 · 66,694–66,945 bp · −
trnW-CCA · NC_026291.1 · 68,236–68,309 bp · −
trnP-UGG · NC_026291.1 · 68,482–68,555 bp · −
rpl20 · NC_026291.1 · 70,403–70,795 bp · −
rps12 · NC_026291.1 · 71,622–71,735 bp · −
rps12 · NC_026291.1 · 100,001–100,243 bp · −
clpP · NC_026291.1 · 71,879–73,878 bp · −
psbN · NC_026291.1 · 76,260–76,391 bp · −
rpoA · NC_026291.1 · 79,880–80,890 bp · −
rps11 · NC_026291.1 · 80,962–81,378 bp · −
rpl36 · NC_026291.1 · 81,486–81,599 bp · −
infA · NC_026291.1 · 81,720–81,953 bp · −
rps8 · NC_026291.1 · 82,078–82,482 bp · −
rpl14 · NC_026291.1 · 82,677–83,045 bp · −
rpl16 · NC_026291.1 · 83,184–84,523 bp · −
rps3 · NC_026291.1 · 84,665–85,327 bp · −
rpl22 · NC_026291.1 · 85,312–85,776 bp · −
rps19 · NC_026291.1 · 85,836–86,114 bp · −
rpl2 · NC_026291.1 · 86,169–87,660 bp · −
rpl23 · NC_026291.1 · 87,679–87,960 bp · −
trnI-CAU · NC_026291.1 · 88,126–88,199 bp · −
trnL-CAA · NC_026291.1 · 95,778–95,858 bp · −
ndhB · NC_026291.1 · 96,418–98,629 bp · −
rps7 · NC_026291.1 · 98,929–99,396 bp · −
trnN-GUU · NC_026291.1 · 110,355–110,426 bp · −
ndhF · NC_026291.1 · 111,938–114,202 bp · −
ndhD · NC_026291.1 · 116,781–118,283 bp · −
psaC · NC_026291.1 · 118,428–118,673 bp · −
ndhE · NC_026291.1 · 118,929–119,234 bp · −
ndhG · NC_026291.1 · 119,467–119,997 bp · −
ndhI · NC_026291.1 · 120,339–120,845 bp · −
ndhA · NC_026291.1 · 120,927–122,997 bp · −
ndhH · NC_026291.1 · 122,999–124,180 bp · −
rps15 · NC_026291.1 · 124,277–124,549 bp · −
ycf1 · NC_026291.1 · 124,936–130,611 bp · −
trnR-ACG · NC_026291.1 · 131,589–131,662 bp · −
5S rRNA · NC_026291.1 · 131,905–132,025 bp · −
4.5S rRNA · NC_026291.1 · 132,287–132,389 bp · −
23S rRNA · NC_026291.1 · 132,488–135,298 bp · −
trnA-UGC · NC_026291.1 · 135,468–136,359 bp · −
trnI-GAU · NC_026291.1 · 136,424–137,442 bp · −
16S rRNA · NC_026291.1 · 137,741–139,231 bp · −
trnV-GAC · NC_026291.1 · 139,445–139,516 bp · −
ycf15 · NC_026291.1 · 145,855–146,052 bp · −
ycf2 · NC_026291.1 · 146,194–153,084 bp · −
psbK · NC_026291.1 · 8,097–8,288 bp · +
psbI · NC_026291.1 · 8,680–8,790 bp · +
trnG-CGA · NC_026291.1 · 9,759–10,535 bp · +
trnR-UCU · NC_026291.1 · 10,730–10,801 bp · +
trnC-GCA · NC_026291.1 · 29,021–29,091 bp · +
petN · NC_026291.1 · 29,934–30,023 bp · +
trnT-GGU · NC_026291.1 · 32,626–32,697 bp · +
psbD · NC_026291.1 · 34,099–35,160 bp · +
psbC · NC_026291.1 · 35,108–36,529 bp · +
psbZ · NC_026291.1 · 37,200–37,388 bp · +
trnG-GCC · NC_026291.1 · 37,666–37,736 bp · +
trnS-GGA · NC_026291.1 · 46,681–46,767 bp · +
trnL-UAA · NC_026291.1 · 48,818–49,384 bp · +
trnF-GAA · NC_026291.1 · 49,705–49,777 bp · +
trnM-CAU · NC_026291.1 · 54,050–54,122 bp · +
rbcl · NC_026291.1 · 57,016–58,458 bp · +
accD · NC_026291.1 · 59,189–60,670 bp · +
psaI · NC_026291.1 · 61,389–61,499 bp · +
ycf4 · NC_026291.1 · 61,957–62,511 bp · +
cemA · NC_026291.1 · 63,194–63,883 bp · +
petA · NC_026291.1 · 64,095–65,057 bp · +
petL · NC_026291.1 · 67,725–67,820 bp · +
petG · NC_026291.1 · 67,995–68,108 bp · +
psaJ · NC_026291.1 · 68,859–68,993 bp · +
rpl33 · NC_026291.1 · 69,480–69,680 bp · +
rps18 · NC_026291.1 · 69,857–70,162 bp · +
rps12 · NC_026291.1 · 141,129–141,371 bp · +
psbB · NC_026291.1 · 74,351–75,877 bp · +
psbT · NC_026291.1 · 76,063–76,185 bp · +
psbH · NC_026291.1 · 76,497–76,718 bp · +
petB · NC_026291.1 · 76,843–78,248 bp · +
petD · NC_026291.1 · 79,162–79,686 bp · +
ycf2 · NC_026291.1 · 88,288–95,178 bp · +
ycf15 · NC_026291.1 · 95,320–95,517 bp · +
trnV-GAC · NC_026291.1 · 101,856–101,927 bp · +
16S rRNA · NC_026291.1 · 102,141–103,631 bp · +
trnI-GAU · NC_026291.1 · 103,930–104,948 bp · +
trnA-UGC · NC_026291.1 · 105,013–105,904 bp · +
23S rRNA · NC_026291.1 · 106,074–108,884 bp · +
4.5S rRNA · NC_026291.1 · 108,983–109,085 bp · +
5S rRNA · NC_026291.1 · 109,347–109,467 bp · +
trnR-ACG · NC_026291.1 · 109,710–109,783 bp · +
ycf1 · NC_026291.1 · 110,761–111,780 bp · +
rpl32 · NC_026291.1 · 114,739–114,915 bp · +
trnL-UAG · NC_026291.1 · 115,364–115,443 bp · +
ccsA · NC_026291.1 · 115,541–116,518 bp · +
trnN-GUU · NC_026291.1 · 130,946–131,017 bp · +
rps7 · NC_026291.1 · 141,976–142,443 bp · +
ndhB · NC_026291.1 · 142,743–144,954 bp · +
trnL-CAA · NC_026291.1 · 145,514–145,594 bp · +
trnI-CAU · NC_026291.1 · 153,173–153,246 bp · +
rpl23 · NC_026291.1 · 153,412–153,693 bp · +
rpl2 · NC_026291.1 · 153,712–155,203 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Premna microphylla
ANNOTATED PLASTOME
NC_026291.1
155,293 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
0 38823 77646 116470 155293 bp
Forward strand 5′ → 3′
psbK psbI trnG-CGA trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcl accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC 16S rRNA trnI-GAU trnA-UGC 23S rRNA 4.5S rRNA 5S rRNA trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG 5S rRNA 4.5S rRNA 23S rRNA trnA-UGC trnI-GAU 16S rRNA trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 11 84 74 Locate
psbA gene − 389 1447 1059 Locate
trnK-UUU gene − 1722 4337 2616 Locate
matK gene − 2053 3597 1545 Locate
rps16 gene − 5246 6397 1152 Locate
trnQ-UUG gene − 7634 7705 72 Locate
psbK gene + 8097 8288 192 Locate
psbI gene + 8680 8790 111 Locate
trnS-GCU gene − 8951 9038 88 Locate
trnG-CGA gene + 9759 10535 777 Locate
trnR-UCU gene + 10730 10801 72 Locate
atpA gene − 10919 12442 1524 Locate
atpF gene − 12535 13808 1274 Locate
atpH gene − 14177 14422 246 Locate
atpI gene − 15448 16191 744 Locate
rps2 gene − 16422 17132 711 Locate
rpoC2 gene − 17353 21537 4185 Locate
rpoC1 gene − 21699 24582 2884 Locate
rpoB gene − 24609 27821 3213 Locate
trnC-GCA gene + 29021 29091 71 Locate
petN gene + 29934 30023 90 Locate
psbM gene − 31021 31125 105 Locate
trnD-GUC gene − 31645 31718 74 Locate
trnY-GUA gene − 31841 31924 84 Locate
trnE-UUC gene − 31988 32060 73 Locate
trnT-GGU gene + 32626 32697 72 Locate
psbD gene + 34099 35160 1062 Locate
psbC gene + 35108 36529 1422 Locate
trnS-UGA gene − 36766 36858 93 Locate
psbZ gene + 37200 37388 189 Locate
trnG-GCC gene + 37666 37736 71 Locate
trnfM-CAU gene − 37918 37991 74 Locate
rps14 gene − 38143 38445 303 Locate
psaB gene − 38568 40772 2205 Locate
psaA gene − 40798 43050 2253 Locate
ycf3 gene − 43827 45828 2002 Locate
trnS-GGA gene + 46681 46767 87 Locate
rps4 gene − 47050 47655 606 Locate
trnT-UGU gene − 48016 48088 73 Locate
trnL-UAA gene + 48818 49384 567 Locate
trnF-GAA gene + 49705 49777 73 Locate
ndhJ gene − 50460 50936 477 Locate
ndhK gene − 51037 51714 678 Locate
ndhC gene − 51766 52128 363 Locate
trnV-UAC gene − 53210 53869 660 Locate
trnM-CAU gene + 54050 54122 73 Locate
atpE gene − 54331 54732 402 Locate
atpB gene − 54729 56225 1497 Locate
rbcl gene + 57016 58458 1443 Locate
accD gene + 59189 60670 1482 Locate
psaI gene + 61389 61499 111 Locate
ycf4 gene + 61957 62511 555 Locate
cemA gene + 63194 63883 690 Locate
petA gene + 64095 65057 963 Locate
psbJ gene − 66164 66286 123 Locate
psbL gene − 66420 66536 117 Locate
psbF gene − 66560 66679 120 Locate
psbE gene − 66694 66945 252 Locate
petL gene + 67725 67820 96 Locate
petG gene + 67995 68108 114 Locate
trnW-CCA gene − 68236 68309 74 Locate
trnP-UGG gene − 68482 68555 74 Locate
psaJ gene + 68859 68993 135 Locate
rpl33 gene + 69480 69680 201 Locate
rps18 gene + 69857 70162 306 Locate
rpl20 gene − 70403 70795 393 Locate
rps12 gene − 71622 71735 114 Locate
clpP gene − 71879 73878 2000 Locate
psbB gene + 74351 75877 1527 Locate
psbT gene + 76063 76185 123 Locate
psbN gene − 76260 76391 132 Locate
psbH gene + 76497 76718 222 Locate
petB gene + 76843 78248 1406 Locate
petD gene + 79162 79686 525 Locate
rpoA gene − 79880 80890 1011 Locate
rps11 gene − 80962 81378 417 Locate
rpl36 gene − 81486 81599 114 Locate
infA gene − 81720 81953 234 Locate
rps8 gene − 82078 82482 405 Locate
rpl14 gene − 82677 83045 369 Locate
rpl16 gene − 83184 84523 1340 Locate
rps3 gene − 84665 85327 663 Locate
rpl22 gene − 85312 85776 465 Locate
rps19 gene − 85836 86114 279 Locate
rpl2 gene − 86169 87660 1492 Locate
rpl23 gene − 87679 87960 282 Locate
trnI-CAU gene − 88126 88199 74 Locate
ycf2 gene + 88288 95178 6891 Locate
ycf15 gene + 95320 95517 198 Locate
trnL-CAA gene − 95778 95858 81 Locate
ndhB gene − 96418 98629 2212 Locate
rps7 gene − 98929 99396 468 Locate
rps12 gene − 100001 100243 243 Locate
trnV-GAC gene + 101856 101927 72 Locate
16S rRNA gene + 102141 103631 1491 Locate
trnI-GAU gene + 103930 104948 1019 Locate
trnA-UGC gene + 105013 105904 892 Locate
23S rRNA gene + 106074 108884 2811 Locate
4.5S rRNA gene + 108983 109085 103 Locate
5S rRNA gene + 109347 109467 121 Locate
trnR-ACG gene + 109710 109783 74 Locate
trnN-GUU gene − 110355 110426 72 Locate
ycf1 gene + 110761 111780 1020 Locate
ndhF gene − 111938 114202 2265 Locate
rpl32 gene + 114739 114915 177 Locate
trnL-UAG gene + 115364 115443 80 Locate
ccsA gene + 115541 116518 978 Locate
ndhD gene − 116781 118283 1503 Locate
psaC gene − 118428 118673 246 Locate
ndhE gene − 118929 119234 306 Locate
ndhG gene − 119467 119997 531 Locate
ndhI gene − 120339 120845 507 Locate
ndhA gene − 120927 122997 2071 Locate
ndhH gene − 122999 124180 1182 Locate
rps15 gene − 124277 124549 273 Locate
ycf1 gene − 124936 130611 5676 Locate
trnN-GUU gene + 130946 131017 72 Locate
trnR-ACG gene − 131589 131662 74 Locate
5S rRNA gene − 131905 132025 121 Locate
4.5S rRNA gene − 132287 132389 103 Locate
23S rRNA gene − 132488 135298 2811 Locate
trnA-UGC gene − 135468 136359 892 Locate
trnI-GAU gene − 136424 137442 1019 Locate
16S rRNA gene − 137741 139231 1491 Locate
trnV-GAC gene − 139445 139516 72 Locate
rps12 gene + 141129 141371 243 Locate
rps7 gene + 141976 142443 468 Locate
ndhB gene + 142743 144954 2212 Locate
trnL-CAA gene + 145514 145594 81 Locate
ycf15 gene − 145855 146052 198 Locate
ycf2 gene − 146194 153084 6891 Locate
trnI-CAU gene + 153173 153246 74 Locate
rpl23 gene + 153412 153693 282 Locate
rpl2 gene + 153712 155203 1492 Locate
Status Available
Accession NC_026291.1
Length 155,293 bp
GC content 37.9%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 23 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources