Prunella vulgaris chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
trnH-GUG · NC_039654.1 · 11–84 bp · −
psbA · NC_039654.1 · 362–1,420 bp · −
trnK-UUU · NC_039654.1 · 1,646–4,219 bp · −
matK · NC_039654.1 · 1,962–3,488 bp · −
rps16 · NC_039654.1 · 4,762–5,844 bp · −
trnQ-UUG · NC_039654.1 · 6,636–6,707 bp · −
trnS-GCU · NC_039654.1 · 7,899–7,986 bp · −
atpA · NC_039654.1 · 9,781–11,304 bp · −
atpF · NC_039654.1 · 11,400–12,649 bp · −
atpH · NC_039654.1 · 12,923–13,168 bp · −
atpI · NC_039654.1 · 14,204–14,947 bp · −
rps2 · NC_039654.1 · 15,179–15,889 bp · −
rpoC2 · NC_039654.1 · 16,103–20,296 bp · −
rpoC1 · NC_039654.1 · 20,450–23,298 bp · −
rpoB · NC_039654.1 · 23,304–26,516 bp · −
psbM · NC_039654.1 · 29,021–29,125 bp · −
trnD-GUC · NC_039654.1 · 29,638–29,711 bp · −
trnY-GUA · NC_039654.1 · 29,822–29,905 bp · −
trnE-UUC · NC_039654.1 · 29,978–30,050 bp · −
trnS-UGA · NC_039654.1 · 34,698–34,790 bp · −
trnfM-CAU · NC_039654.1 · 35,833–35,906 bp · −
rps14 · NC_039654.1 · 36,051–36,353 bp · −
psaB · NC_039654.1 · 36,475–38,679 bp · −
psaA · NC_039654.1 · 38,705–40,957 bp · −
ycf3 · NC_039654.1 · 41,824–43,789 bp · −
rps4 · NC_039654.1 · 45,000–45,605 bp · −
trnT-UGU · NC_039654.1 · 45,956–46,028 bp · −
ndhJ · NC_039654.1 · 48,294–48,770 bp · −
ndhK · NC_039654.1 · 48,884–49,561 bp · −
ndhC · NC_039654.1 · 49,613–49,975 bp · −
trnV-UAC · NC_039654.1 · 50,924–51,579 bp · −
atpE · NC_039654.1 · 52,037–52,438 bp · −
atpB · NC_039654.1 · 52,435–53,934 bp · −
psbJ · NC_039654.1 · 63,253–63,375 bp · −
psbL · NC_039654.1 · 63,510–63,626 bp · −
psbF · NC_039654.1 · 63,650–63,769 bp · −
psbE · NC_039654.1 · 63,784–64,035 bp · −
trnW-CCA · NC_039654.1 · 65,405–65,478 bp · −
trnP-UGG · NC_039654.1 · 65,647–65,720 bp · −
rpl20 · NC_039654.1 · 67,427–67,813 bp · −
rps12 · NC_039654.1 · 68,601–68,726 bp · −
rps12 · NC_039654.1 · 95,973–96,766 bp · −
clpP · NC_039654.1 · 68,855–70,760 bp · −
psbN · NC_039654.1 · 73,096–73,227 bp · −
rpoA · NC_039654.1 · 76,635–77,636 bp · −
rps11 · NC_039654.1 · 77,707–78,123 bp · −
rpl36 · NC_039654.1 · 78,229–78,342 bp · −
infA · NC_039654.1 · 78,438–78,671 bp · −
rps8 · NC_039654.1 · 78,799–79,203 bp · −
rpl14 · NC_039654.1 · 79,391–79,759 bp · −
rpl16 · NC_039654.1 · 79,891–81,111 bp · −
rps3 · NC_039654.1 · 81,275–81,937 bp · −
rpl22 · NC_039654.1 · 81,922–82,389 bp · −
rps19 · NC_039654.1 · 82,453–82,731 bp · −
rpl2 · NC_039654.1 · 82,791–84,286 bp · −
rpl23 · NC_039654.1 · 84,305–84,586 bp · −
trnI-CAU · NC_039654.1 · 84,752–84,825 bp · −
trnL-CAA · NC_039654.1 · 92,339–92,419 bp · −
ndhB · NC_039654.1 · 92,979–95,186 bp · −
rps7 · NC_039654.1 · 95,452–95,919 bp · −
trnN-GUU · NC_039654.1 · 106,839–106,910 bp · −
ndhF · NC_039654.1 · 108,264–110,495 bp · −
ndhD · NC_039654.1 · 112,990–114,519 bp · −
psaC · NC_039654.1 · 114,613–114,858 bp · −
ndhE · NC_039654.1 · 115,111–115,416 bp · −
ndhG · NC_039654.1 · 115,646–116,176 bp · −
ndhI · NC_039654.1 · 116,569–117,075 bp · −
ndhA · NC_039654.1 · 117,156–119,253 bp · −
ndhH · NC_039654.1 · 119,255–120,436 bp · −
rps15 · NC_039654.1 · 120,536–120,808 bp · −
ycf1 · NC_039654.1 · 121,245–126,791 bp · −
trnR-ACG · NC_039654.1 · 127,717–127,790 bp · −
rrn5 · NC_039654.1 · 128,034–128,154 bp · −
rrn4.5 · NC_039654.1 · 128,415–128,517 bp · −
rrn23 · NC_039654.1 · 128,616–131,432 bp · −
trnA-UGC · NC_039654.1 · 131,585–132,462 bp · −
trnI-GAU · NC_039654.1 · 132,532–133,549 bp · −
rrn16 · NC_039654.1 · 133,853–135,343 bp · −
trnV-GAC · NC_039654.1 · 135,570–135,641 bp · −
ycf15 · NC_039654.1 · 141,882–142,130 bp · −
ycf2 · NC_039654.1 · 142,221–149,117 bp · −
psbK · NC_039654.1 · 7,120–7,299 bp · +
psbI · NC_039654.1 · 7,682–7,792 bp · +
trnG-UCC · NC_039654.1 · 8,662–9,417 bp · +
trnR-UCU · NC_039654.1 · 9,605–9,676 bp · +
trnC-GCA · NC_039654.1 · 27,685–27,755 bp · +
petN · NC_039654.1 · 27,911–28,000 bp · +
trnT-GGU · NC_039654.1 · 30,610–30,681 bp · +
psbD · NC_039654.1 · 32,017–33,078 bp · +
psbC · NC_039654.1 · 33,026–34,447 bp · +
psbZ · NC_039654.1 · 35,131–35,319 bp · +
trnG-GCC · NC_039654.1 · 35,598–35,668 bp · +
trnS-GGA · NC_039654.1 · 44,632–44,718 bp · +
trnL-UAA · NC_039654.1 · 46,705–47,289 bp · +
trnF-GAA · NC_039654.1 · 47,584–47,656 bp · +
trnM-CAU · NC_039654.1 · 51,760–51,832 bp · +
rbcL · NC_039654.1 · 54,705–56,138 bp · +
accD · NC_039654.1 · 56,804–58,291 bp · +
psaI · NC_039654.1 · 58,771–58,881 bp · +
ycf4 · NC_039654.1 · 59,323–59,877 bp · +
cemA · NC_039654.1 · 60,338–61,027 bp · +
petA · NC_039654.1 · 61,252–62,214 bp · +
petL · NC_039654.1 · 64,901–64,996 bp · +
petG · NC_039654.1 · 65,182–65,295 bp · +
psaJ · NC_039654.1 · 66,000–66,134 bp · +
rpl33 · NC_039654.1 · 66,515–66,715 bp · +
rps18 · NC_039654.1 · 66,884–67,189 bp · +
psbB · NC_039654.1 · 71,211–72,737 bp · +
psbT · NC_039654.1 · 72,920–73,021 bp · +
psbH · NC_039654.1 · 73,333–73,554 bp · +
petB · NC_039654.1 · 73,680–75,048 bp · +
petD · NC_039654.1 · 75,236–76,439 bp · +
ycf2 · NC_039654.1 · 84,914–91,810 bp · +
ycf15 · NC_039654.1 · 91,901–92,149 bp · +
trnV-GAC · NC_039654.1 · 98,390–98,461 bp · +
rrn16 · NC_039654.1 · 98,688–100,178 bp · +
trnI-GAU · NC_039654.1 · 100,482–101,499 bp · +
trnA-UGC · NC_039654.1 · 101,569–102,446 bp · +
rrn23 · NC_039654.1 · 102,599–105,415 bp · +
rrn4.5 · NC_039654.1 · 105,514–105,616 bp · +
rrn5 · NC_039654.1 · 105,877–105,997 bp · +
trnR-ACG · NC_039654.1 · 106,241–106,314 bp · +
ycf1 · NC_039654.1 · 107,240–108,370 bp · +
rpl32 · NC_039654.1 · 110,954–111,124 bp · +
trnL-UAG · NC_039654.1 · 111,619–111,698 bp · +
ccsA · NC_039654.1 · 111,797–112,774 bp · +
trnN-GUU · NC_039654.1 · 127,121–127,192 bp · +
rps7 · NC_039654.1 · 138,112–138,579 bp · +
ndhB · NC_039654.1 · 138,845–141,052 bp · +
trnL-CAA · NC_039654.1 · 141,612–141,692 bp · +
trnI-CAU · NC_039654.1 · 149,206–149,279 bp · +
rpl23 · NC_039654.1 · 149,445–149,726 bp · +
rpl2 · NC_039654.1 · 149,745–151,240 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Prunella vulgaris
ANNOTATED PLASTOME
NC_039654.1
151,342 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37836 75671 113506 151342 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 11 84 74 Locate
psbA gene − 362 1420 1059 Locate
trnK-UUU gene − 1646 4219 2574 Locate
matK gene − 1962 3488 1527 Locate
rps16 gene − 4762 5844 1083 Locate
trnQ-UUG gene − 6636 6707 72 Locate
psbK gene + 7120 7299 180 Locate
psbI gene + 7682 7792 111 Locate
trnS-GCU gene − 7899 7986 88 Locate
trnG-UCC gene + 8662 9417 756 Locate
trnR-UCU gene + 9605 9676 72 Locate
atpA gene − 9781 11304 1524 Locate
atpF gene − 11400 12649 1250 Locate
atpH gene − 12923 13168 246 Locate
atpI gene − 14204 14947 744 Locate
rps2 gene − 15179 15889 711 Locate
rpoC2 gene − 16103 20296 4194 Locate
rpoC1 gene − 20450 23298 2849 Locate
rpoB gene − 23304 26516 3213 Locate
trnC-GCA gene + 27685 27755 71 Locate
petN gene + 27911 28000 90 Locate
psbM gene − 29021 29125 105 Locate
trnD-GUC gene − 29638 29711 74 Locate
trnY-GUA gene − 29822 29905 84 Locate
trnE-UUC gene − 29978 30050 73 Locate
trnT-GGU gene + 30610 30681 72 Locate
psbD gene + 32017 33078 1062 Locate
psbC gene + 33026 34447 1422 Locate
trnS-UGA gene − 34698 34790 93 Locate
psbZ gene + 35131 35319 189 Locate
trnG-GCC gene + 35598 35668 71 Locate
trnfM-CAU gene − 35833 35906 74 Locate
rps14 gene − 36051 36353 303 Locate
psaB gene − 36475 38679 2205 Locate
psaA gene − 38705 40957 2253 Locate
ycf3 gene − 41824 43789 1966 Locate
trnS-GGA gene + 44632 44718 87 Locate
rps4 gene − 45000 45605 606 Locate
trnT-UGU gene − 45956 46028 73 Locate
trnL-UAA gene + 46705 47289 585 Locate
trnF-GAA gene + 47584 47656 73 Locate
ndhJ gene − 48294 48770 477 Locate
ndhK gene − 48884 49561 678 Locate
ndhC gene − 49613 49975 363 Locate
trnV-UAC gene − 50924 51579 656 Locate
trnM-CAU gene + 51760 51832 73 Locate
atpE gene − 52037 52438 402 Locate
atpB gene − 52435 53934 1500 Locate
rbcL gene + 54705 56138 1434 Locate
accD gene + 56804 58291 1488 Locate
psaI gene + 58771 58881 111 Locate
ycf4 gene + 59323 59877 555 Locate
cemA gene + 60338 61027 690 Locate
petA gene + 61252 62214 963 Locate
psbJ gene − 63253 63375 123 Locate
psbL gene − 63510 63626 117 Locate
psbF gene − 63650 63769 120 Locate
psbE gene − 63784 64035 252 Locate
petL gene + 64901 64996 96 Locate
petG gene + 65182 65295 114 Locate
trnW-CCA gene − 65405 65478 74 Locate
trnP-UGG gene − 65647 65720 74 Locate
psaJ gene + 66000 66134 135 Locate
rpl33 gene + 66515 66715 201 Locate
rps18 gene + 66884 67189 306 Locate
rpl20 gene − 67427 67813 387 Locate
rps12 gene − 68601 68726 126 Locate
clpP gene − 68855 70760 1906 Locate
psbB gene + 71211 72737 1527 Locate
psbT gene + 72920 73021 102 Locate
psbN gene − 73096 73227 132 Locate
psbH gene + 73333 73554 222 Locate
petB gene + 73680 75048 1369 Locate
petD gene + 75236 76439 1204 Locate
rpoA gene − 76635 77636 1002 Locate
rps11 gene − 77707 78123 417 Locate
rpl36 gene − 78229 78342 114 Locate
infA gene − 78438 78671 234 Locate
rps8 gene − 78799 79203 405 Locate
rpl14 gene − 79391 79759 369 Locate
rpl16 gene − 79891 81111 1221 Locate
rps3 gene − 81275 81937 663 Locate
rpl22 gene − 81922 82389 468 Locate
rps19 gene − 82453 82731 279 Locate
rpl2 gene − 82791 84286 1496 Locate
rpl23 gene − 84305 84586 282 Locate
trnI-CAU gene − 84752 84825 74 Locate
ycf2 gene + 84914 91810 6897 Locate
ycf15 gene + 91901 92149 249 Locate
trnL-CAA gene − 92339 92419 81 Locate
ndhB gene − 92979 95186 2208 Locate
rps7 gene − 95452 95919 468 Locate
rps12 gene − 95973 96766 794 Locate
trnV-GAC gene + 98390 98461 72 Locate
rrn16 gene + 98688 100178 1491 Locate
trnI-GAU gene + 100482 101499 1018 Locate
trnA-UGC gene + 101569 102446 878 Locate
rrn23 gene + 102599 105415 2817 Locate
rrn4.5 gene + 105514 105616 103 Locate
rrn5 gene + 105877 105997 121 Locate
trnR-ACG gene + 106241 106314 74 Locate
trnN-GUU gene − 106839 106910 72 Locate
ycf1 gene + 107240 108370 1131 Locate
ndhF gene − 108264 110495 2232 Locate
rpl32 gene + 110954 111124 171 Locate
trnL-UAG gene + 111619 111698 80 Locate
ccsA gene + 111797 112774 978 Locate
ndhD gene − 112990 114519 1530 Locate
psaC gene − 114613 114858 246 Locate
ndhE gene − 115111 115416 306 Locate
ndhG gene − 115646 116176 531 Locate
ndhI gene − 116569 117075 507 Locate
ndhA gene − 117156 119253 2098 Locate
ndhH gene − 119255 120436 1182 Locate
rps15 gene − 120536 120808 273 Locate
ycf1 gene − 121245 126791 5547 Locate
trnN-GUU gene + 127121 127192 72 Locate
trnR-ACG gene − 127717 127790 74 Locate
rrn5 gene − 128034 128154 121 Locate
rrn4.5 gene − 128415 128517 103 Locate
rrn23 gene − 128616 131432 2817 Locate
trnA-UGC gene − 131585 132462 878 Locate
trnI-GAU gene − 132532 133549 1018 Locate
rrn16 gene − 133853 135343 1491 Locate
trnV-GAC gene − 135570 135641 72 Locate
rps7 gene + 138112 138579 468 Locate
ndhB gene + 138845 141052 2208 Locate
trnL-CAA gene + 141612 141692 81 Locate
ycf15 gene − 141882 142130 249 Locate
ycf2 gene − 142221 149117 6897 Locate
trnI-CAU gene + 149206 149279 74 Locate
rpl23 gene + 149445 149726 282 Locate
rpl2 gene + 149745 151240 1496 Locate
Status Available
Accession NC_039654.1
Length 151,342 bp
GC content 37.9%
Annotated genes 132
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 25 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 0
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources