Pycnostachys reticulata chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · MT740257.1 · 11–85 bp · −
psbA · MT740257.1 · 384–1,442 bp · −
matK · MT740257.1 · 1,994–3,502 bp · −
trnK-UUU · MT740257.1 · 4,215–4,251 bp · −
rps16 · MT740257.1 · 4,787–4,990 bp · −
trnQ-UUG · MT740257.1 · 6,910–6,981 bp · −
trnS-GCU · MT740257.1 · 8,224–8,311 bp · −
atpA · MT740257.1 · 10,176–11,699 bp · −
atpF · MT740257.1 · 11,792–13,038 bp · −
atpH · MT740257.1 · 13,304–13,549 bp · −
atpI · MT740257.1 · 14,590–15,333 bp · −
rps2 · MT740257.1 · 15,559–16,269 bp · −
rpoC2 · MT740257.1 · 16,478–20,641 bp · −
rpoC1 · MT740257.1 · 20,806–23,618 bp · −
rpoB · MT740257.1 · 23,645–26,857 bp · −
psbM · MT740257.1 · 29,387–29,491 bp · −
trnD-GUC · MT740257.1 · 30,006–30,079 bp · −
trnY-GUA · MT740257.1 · 30,190–30,273 bp · −
trnE-UUC · MT740257.1 · 30,351–30,423 bp · −
trnS-UGA · MT740257.1 · 35,018–35,109 bp · −
trnfM-CAU · MT740257.1 · 36,131–36,204 bp · −
rps14 · MT740257.1 · 36,349–36,651 bp · −
psaB · MT740257.1 · 36,774–38,978 bp · −
psaA · MT740257.1 · 39,004–41,256 bp · −
ycf3 · MT740257.1 · 42,050–44,000 bp · −
rps4 · MT740257.1 · 45,243–45,848 bp · −
trnT-UGU · MT740257.1 · 46,221–46,293 bp · −
ndhJ · MT740257.1 · 48,584–49,060 bp · −
ndhK · MT740257.1 · 49,171–49,848 bp · −
ndhC · MT740257.1 · 49,900–50,262 bp · −
trnV-UAC · MT740257.1 · 51,202–51,848 bp · −
atpE · MT740257.1 · 52,309–52,710 bp · −
atpB · MT740257.1 · 52,707–54,203 bp · −
psbJ · MT740257.1 · 63,989–64,111 bp · −
psbL · MT740257.1 · 64,246–64,362 bp · −
psbF · MT740257.1 · 64,386–64,505 bp · −
psbE · MT740257.1 · 64,520–64,771 bp · −
trnW-CCA · MT740257.1 · 66,157–66,230 bp · −
trnP-UGG · MT740257.1 · 66,398–66,471 bp · −
trnP-GGG · MT740257.1 · 66,400–66,470 bp · −
rpl20 · MT740257.1 · 68,213–68,599 bp · −
rps12 · MT740257.1 · 69,321–69,446 bp · −
rps12 · MT740257.1 · 97,260–97,502 bp · −
clpP · MT740257.1 · 69,565–71,489 bp · −
psbN · MT740257.1 · 73,838–73,969 bp · −
rpoA · MT740257.1 · 77,335–78,342 bp · −
rps11 · MT740257.1 · 78,412–78,828 bp · −
rpl36 · MT740257.1 · 78,938–79,051 bp · −
infA · MT740257.1 · 79,147–79,380 bp · −
rps8 · MT740257.1 · 79,508–79,912 bp · −
rpl14 · MT740257.1 · 80,084–80,452 bp · −
rpl16 · MT740257.1 · 80,585–80,944 bp · −
rps3 · MT740257.1 · 82,002–82,664 bp · −
rpl22 · MT740257.1 · 82,649–83,122 bp · −
rps19 · MT740257.1 · 83,205–83,462 bp · −
rpl2 · MT740257.1 · 83,530–85,008 bp · −
rpl23 · MT740257.1 · 85,027–85,308 bp · −
trnI-CAU · MT740257.1 · 85,474–85,547 bp · −
trnL-CAA · MT740257.1 · 93,059–93,139 bp · −
ndhB · MT740257.1 · 93,712–95,919 bp · −
rps7 · MT740257.1 · 96,190–96,657 bp · −
trnN-GUU · MT740257.1 · 107,637–107,709 bp · −
ndhF · MT740257.1 · 109,075–111,306 bp · −
ndhD · MT740257.1 · 114,074–115,603 bp · −
psaC · MT740257.1 · 115,694–115,939 bp · −
ndhE · MT740257.1 · 116,164–116,469 bp · −
ndhG · MT740257.1 · 116,684–117,214 bp · −
ndhI · MT740257.1 · 117,574–118,080 bp · −
ndhA · MT740257.1 · 118,156–120,271 bp · −
ndhH · MT740257.1 · 120,273–121,454 bp · −
rps15 · MT740257.1 · 121,569–121,841 bp · −
ycf1 · MT740257.1 · 122,262–127,856 bp · −
trnR-ACG · MT740257.1 · 128,838–128,911 bp · −
trnA-UGC · MT740257.1 · 132,696–133,574 bp · −
trnI-GAU · MT740257.1 · 133,639–134,657 bp · −
trnV-GAC · MT740257.1 · 136,672–136,743 bp · −
ycf15 · MT740257.1 · 143,090–143,338 bp · −
ycf2 · MT740257.1 · 143,429–150,262 bp · −
psbK · MT740257.1 · 7,370–7,555 bp · +
psbI · MT740257.1 · 7,951–8,061 bp · +
trnR-UCU · MT740257.1 · 10,002–10,073 bp · +
trnC-GCA · MT740257.1 · 28,038–28,118 bp · +
petN · MT740257.1 · 28,265–28,360 bp · +
trnT-GGU · MT740257.1 · 31,043–31,114 bp · +
trnM-CAU · MT740257.1 · 31,049–31,107 bp · +
psbD · MT740257.1 · 32,353–33,414 bp · +
psbC · MT740257.1 · 33,362–34,783 bp · +
psbZ · MT740257.1 · 35,450–35,638 bp · +
trnG-UCC · MT740257.1 · 35,888–35,958 bp · +
trnS-GGA · MT740257.1 · 44,872–44,958 bp · +
trnL-UAA · MT740257.1 · 46,974–47,534 bp · +
trnF-GAA · MT740257.1 · 47,834–47,906 bp · +
trnM-CAU · MT740257.1 · 52,030–52,101 bp · +
rbcL · MT740257.1 · 54,993–56,426 bp · +
accD · MT740257.1 · 57,074–58,624 bp · +
psaI · MT740257.1 · 59,347–59,457 bp · +
ycf4 · MT740257.1 · 59,903–60,457 bp · +
cemA · MT740257.1 · 61,110–61,799 bp · +
petA · MT740257.1 · 62,013–62,975 bp · +
petL · MT740257.1 · 65,651–65,746 bp · +
petG · MT740257.1 · 65,921–66,034 bp · +
psaJ · MT740257.1 · 66,759–66,893 bp · +
rpl33 · MT740257.1 · 67,305–67,505 bp · +
rps18 · MT740257.1 · 67,671–67,976 bp · +
rps12 · MT740257.1 · 138,402–138,644 bp · +
psbB · MT740257.1 · 71,962–73,488 bp · +
psbT · MT740257.1 · 73,671–73,772 bp · +
psbH · MT740257.1 · 74,057–74,293 bp · +
petB · MT740257.1 · 75,115–75,774 bp · +
petD · MT740257.1 · 76,634–77,158 bp · +
ycf2 · MT740257.1 · 85,642–92,475 bp · +
ycf15 · MT740257.1 · 92,617–92,814 bp · +
trnV-GAC · MT740257.1 · 99,161–99,232 bp · +
trnI-GAU · MT740257.1 · 101,247–102,265 bp · +
trnA-UGC · MT740257.1 · 102,330–103,208 bp · +
trnR-ACG · MT740257.1 · 106,993–107,066 bp · +
ycf1 · MT740257.1 · 108,051–109,181 bp · +
rpl32 · MT740257.1 · 111,784–111,954 bp · +
trnL-UAG · MT740257.1 · 112,703–112,782 bp · +
ccsA · MT740257.1 · 112,871–113,842 bp · +
trnN-GUU · MT740257.1 · 128,195–128,267 bp · +
rps7 · MT740257.1 · 139,247–139,714 bp · +
ndhB · MT740257.1 · 139,985–142,192 bp · +
trnL-CAA · MT740257.1 · 142,765–142,845 bp · +
trnI-CAU · MT740257.1 · 150,357–150,430 bp · +
rpl23 · MT740257.1 · 150,596–150,877 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Pycnostachys reticulata
ANNOTATED PLASTOME
MT740257.1
152,480 bp · 125 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
0 38120 76240 114360 152480 bp
Forward strand 5′ → 3′
psbK psbI trnR-UCU trnC-GCA petN trnT-GGU trnM-CAU psbD psbC psbZ trnG-UCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC trnI-GAU trnA-UGC trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23
trnH-GUG psbA matK trnK-UUU rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG trnP-GGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG trnA-UGC trnI-GAU trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
126 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 11 85 75 Locate
psbA gene − 384 1442 1059 Locate
matK gene − 1994 3502 1509 Locate
trnK-UUU gene − 4215 4251 37 Locate
rps16 gene − 4787 4990 204 Locate
trnQ-UUG gene − 6910 6981 72 Locate
psbK gene + 7370 7555 186 Locate
psbI gene + 7951 8061 111 Locate
trnS-GCU gene − 8224 8311 88 Locate
trnR-UCU gene + 10002 10073 72 Locate
atpA gene − 10176 11699 1524 Locate
atpF gene − 11792 13038 1247 Locate
atpH gene − 13304 13549 246 Locate
atpI gene − 14590 15333 744 Locate
rps2 gene − 15559 16269 711 Locate
rpoC2 gene − 16478 20641 4164 Locate
rpoC1 gene − 20806 23618 2813 Locate
rpoB gene − 23645 26857 3213 Locate
trnC-GCA gene + 28038 28118 81 Locate
petN gene + 28265 28360 96 Locate
psbM gene − 29387 29491 105 Locate
trnD-GUC gene − 30006 30079 74 Locate
trnY-GUA gene − 30190 30273 84 Locate
trnE-UUC gene − 30351 30423 73 Locate
trnT-GGU gene + 31043 31114 72 Locate
trnM-CAU gene + 31049 31107 59 Locate
psbD gene + 32353 33414 1062 Locate
psbC gene + 33362 34783 1422 Locate
trnS-UGA gene − 35018 35109 92 Locate
psbZ gene + 35450 35638 189 Locate
trnG-UCC gene + 35888 35958 71 Locate
trnfM-CAU gene − 36131 36204 74 Locate
rps14 gene − 36349 36651 303 Locate
psaB gene − 36774 38978 2205 Locate
psaA gene − 39004 41256 2253 Locate
ycf3 gene − 42050 44000 1951 Locate
trnS-GGA gene + 44872 44958 87 Locate
rps4 gene − 45243 45848 606 Locate
trnT-UGU gene − 46221 46293 73 Locate
trnL-UAA gene + 46974 47534 561 Locate
trnF-GAA gene + 47834 47906 73 Locate
ndhJ gene − 48584 49060 477 Locate
ndhK gene − 49171 49848 678 Locate
ndhC gene − 49900 50262 363 Locate
trnV-UAC gene − 51202 51848 647 Locate
trnM-CAU gene + 52030 52101 72 Locate
atpE gene − 52309 52710 402 Locate
atpB gene − 52707 54203 1497 Locate
rbcL gene + 54993 56426 1434 Locate
accD gene + 57074 58624 1551 Locate
psaI gene + 59347 59457 111 Locate
ycf4 gene + 59903 60457 555 Locate
cemA gene + 61110 61799 690 Locate
petA gene + 62013 62975 963 Locate
psbJ gene − 63989 64111 123 Locate
psbL gene − 64246 64362 117 Locate
psbF gene − 64386 64505 120 Locate
psbE gene − 64520 64771 252 Locate
petL gene + 65651 65746 96 Locate
petG gene + 65921 66034 114 Locate
trnW-CCA gene − 66157 66230 74 Locate
trnP-UGG gene − 66398 66471 74 Locate
trnP-GGG gene − 66400 66470 71 Locate
psaJ gene + 66759 66893 135 Locate
rpl33 gene + 67305 67505 201 Locate
rps18 gene + 67671 67976 306 Locate
rpl20 gene − 68213 68599 387 Locate
rps12 gene − 69321 69446 126 Locate
clpP gene − 69565 71489 1925 Locate
psbB gene + 71962 73488 1527 Locate
psbT gene + 73671 73772 102 Locate
psbN gene − 73838 73969 132 Locate
psbH gene + 74057 74293 237 Locate
petB gene + 75115 75774 660 Locate
petD gene + 76634 77158 525 Locate
rpoA gene − 77335 78342 1008 Locate
rps11 gene − 78412 78828 417 Locate
rpl36 gene − 78938 79051 114 Locate
infA gene − 79147 79380 234 Locate
rps8 gene − 79508 79912 405 Locate
rpl14 gene − 80084 80452 369 Locate
rpl16 gene − 80585 80944 360 Locate
rps3 gene − 82002 82664 663 Locate
rpl22 gene − 82649 83122 474 Locate
rps19 gene − 83205 83462 258 Locate
rpl2 gene − 83530 85008 1479 Locate
rpl23 gene − 85027 85308 282 Locate
trnI-CAU gene − 85474 85547 74 Locate
ycf2 gene + 85642 92475 6834 Locate
ycf15 gene + 92617 92814 198 Locate
trnL-CAA gene − 93059 93139 81 Locate
ndhB gene − 93712 95919 2208 Locate
rps7 gene − 96190 96657 468 Locate
rps12 gene − 97260 97502 243 Locate
trnV-GAC gene + 99161 99232 72 Locate
trnI-GAU gene + 101247 102265 1019 Locate
trnA-UGC gene + 102330 103208 879 Locate
trnR-ACG gene + 106993 107066 74 Locate
trnN-GUU gene − 107637 107709 73 Locate
ycf1 gene + 108051 109181 1131 Locate
ndhF gene − 109075 111306 2232 Locate
rpl32 gene + 111784 111954 171 Locate
trnL-UAG gene + 112703 112782 80 Locate
ccsA gene + 112871 113842 972 Locate
ndhD gene − 114074 115603 1530 Locate
psaC gene − 115694 115939 246 Locate
ndhE gene − 116164 116469 306 Locate
ndhG gene − 116684 117214 531 Locate
ndhI gene − 117574 118080 507 Locate
ndhA gene − 118156 120271 2116 Locate
ndhH gene − 120273 121454 1182 Locate
rps15 gene − 121569 121841 273 Locate
ycf1 gene − 122262 127856 5595 Locate
trnN-GUU gene + 128195 128267 73 Locate
trnR-ACG gene − 128838 128911 74 Locate
trnA-UGC gene − 132696 133574 879 Locate
trnI-GAU gene − 133639 134657 1019 Locate
trnV-GAC gene − 136672 136743 72 Locate
rps12 gene + 138402 138644 243 Locate
rps7 gene + 139247 139714 468 Locate
ndhB gene + 139985 142192 2208 Locate
trnL-CAA gene + 142765 142845 81 Locate
ycf15 gene − 143090 143338 249 Locate
ycf2 gene − 143429 150262 6834 Locate
trnI-CAU gene + 150357 150430 74 Locate
rpl23 gene + 150596 150877 282 Locate
Status Available
Accession MT740257.1
Length 152,480 bp
GC content 37.8%
Annotated genes 125
Gene sequence records 8
Translation Rna 38 Photosystem Ii 15 Other 15 Ribosomal Protein 25 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources