Rotheca myricoides chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · NC_059906.1 · 7–80 bp · −
psbA · NC_059906.1 · 548–1,606 bp · −
trnK-UUU · NC_059906.1 · 1,849–4,437 bp · −
matK · NC_059906.1 · 2,151–3,686 bp · −
rps16 · NC_059906.1 · 5,106–6,246 bp · −
trnQ-UUG · NC_059906.1 · 7,398–7,469 bp · −
trnS-GCU · NC_059906.1 · 8,576–8,663 bp · −
atpA · NC_059906.1 · 10,465–11,988 bp · −
atpF · NC_059906.1 · 12,075–13,318 bp · −
atpH · NC_059906.1 · 13,693–13,938 bp · −
atpI · NC_059906.1 · 14,926–15,669 bp · −
rps2 · NC_059906.1 · 15,897–16,607 bp · −
rpoC2 · NC_059906.1 · 16,846–21,003 bp · −
rpoC1 · NC_059906.1 · 21,170–24,008 bp · −
rpoB · NC_059906.1 · 24,038–27,241 bp · −
psbM · NC_059906.1 · 30,009–30,113 bp · −
trnD-GUC · NC_059906.1 · 30,638–30,711 bp · −
trnY-GUA · NC_059906.1 · 30,819–30,902 bp · −
trnE-UUC · NC_059906.1 · 30,962–31,034 bp · −
trnS-UGA · NC_059906.1 · 35,663–35,755 bp · −
trnM-CAU · NC_059906.1 · 36,748–36,821 bp · −
rps14 · NC_059906.1 · 36,971–37,273 bp · −
psaB · NC_059906.1 · 37,402–39,606 bp · −
psaA · NC_059906.1 · 39,632–41,884 bp · −
ycf3 · NC_059906.1 · 42,612–44,573 bp · −
rps4 · NC_059906.1 · 45,552–46,157 bp · −
trnT-UGU · NC_059906.1 · 46,439–46,511 bp · −
ndhJ · NC_059906.1 · 48,748–49,224 bp · −
ndhK · NC_059906.1 · 49,337–49,993 bp · −
ndhC · NC_059906.1 · 50,047–50,409 bp · −
trnV-UAC · NC_059906.1 · 51,272–51,936 bp · −
atpE · NC_059906.1 · 52,401–52,802 bp · −
atpB · NC_059906.1 · 52,799–54,295 bp · −
psbJ · NC_059906.1 · 63,907–64,029 bp · −
psbL · NC_059906.1 · 64,163–64,279 bp · −
psbF · NC_059906.1 · 64,303–64,422 bp · −
psbE · NC_059906.1 · 64,437–64,688 bp · −
trnW-CCA · NC_059906.1 · 66,035–66,108 bp · −
trnP-UGG · NC_059906.1 · 66,271–66,344 bp · −
rpl20 · NC_059906.1 · 68,140–68,526 bp · −
rps12 · NC_059906.1 · 69,342–69,455 bp · −
rps12 · NC_059906.1 · 96,138–96,934 bp · −
clpP · NC_059906.1 · 69,586–71,530 bp · −
psbN · NC_059906.1 · 73,835–73,966 bp · −
rpoA · NC_059906.1 · 77,387–78,400 bp · −
rps11 · NC_059906.1 · 78,472–78,888 bp · −
rpl36 · NC_059906.1 · 78,990–79,103 bp · −
infA · NC_059906.1 · 79,198–79,431 bp · −
rps8 · NC_059906.1 · 79,553–79,957 bp · −
rpl14 · NC_059906.1 · 80,181–80,549 bp · −
rpl16 · NC_059906.1 · 80,675–81,920 bp · −
rps3 · NC_059906.1 · 82,079–82,747 bp · −
rpl22 · NC_059906.1 · 82,732–83,196 bp · −
rps19 · NC_059906.1 · 83,243–83,521 bp · −
rpl2 · NC_059906.1 · 83,566–85,042 bp · −
rpl23 · NC_059906.1 · 85,061–85,342 bp · −
trnI-CAU · NC_059906.1 · 85,508–85,581 bp · −
trnL-CAA · NC_059906.1 · 92,495–92,575 bp · −
ndhB · NC_059906.1 · 93,129–95,341 bp · −
rps7 · NC_059906.1 · 95,617–96,084 bp · −
trnN-GUU · NC_059906.1 · 106,945–107,016 bp · −
ccsA · NC_059906.1 · 121,285–122,256 bp · −
trnL-UAG · NC_059906.1 · 122,341–122,420 bp · −
rpl32 · NC_059906.1 · 122,760–122,936 bp · −
ycf1 · NC_059906.1 · 125,662–126,740 bp · −
trnR-ACG · NC_059906.1 · 127,698–127,771 bp · −
rrn5 · NC_059906.1 · 128,008–128,128 bp · −
rrn4.5 · NC_059906.1 · 128,381–128,483 bp · −
rrn23 · NC_059906.1 · 128,585–131,392 bp · −
trnA-UGC · NC_059906.1 · 131,553–132,424 bp · −
trnI-GAU · NC_059906.1 · 132,489–133,500 bp · −
trnV-GAC · NC_059906.1 · 135,516–135,587 bp · −
ycf15 · NC_059906.1 · 141,859–142,107 bp · −
ycf2 · NC_059906.1 · 142,198–148,410 bp · −
psbK · NC_059906.1 · 7,800–7,985 bp · +
psbI · NC_059906.1 · 8,374–8,484 bp · +
trnG-UCC · NC_059906.1 · 9,353–10,115 bp · +
trnR-UCU · NC_059906.1 · 10,284–10,355 bp · +
trnC-GCA · NC_059906.1 · 28,390–28,460 bp · +
petN · NC_059906.1 · 29,280–29,369 bp · +
trnT-GGU · NC_059906.1 · 31,559–31,630 bp · +
psbD · NC_059906.1 · 32,990–34,051 bp · +
psbC · NC_059906.1 · 33,999–35,420 bp · +
psbZ · NC_059906.1 · 36,083–36,271 bp · +
trnG-GCC · NC_059906.1 · 36,546–36,616 bp · +
trnS-GGA · NC_059906.1 · 45,189–45,275 bp · +
trnL-UAA · NC_059906.1 · 47,188–47,751 bp · +
trnP-GAA · NC_059906.1 · 48,062–48,134 bp · +
trnM-CAU · NC_059906.1 · 52,112–52,184 bp · +
rbcL · NC_059906.1 · 55,078–56,511 bp · +
accD · NC_059906.1 · 57,163–58,680 bp · +
psaI · NC_059906.1 · 59,351–59,461 bp · +
ycf4 · NC_059906.1 · 59,892–60,446 bp · +
cemA · NC_059906.1 · 61,099–61,788 bp · +
petA · NC_059906.1 · 61,992–62,954 bp · +
petL · NC_059906.1 · 65,533–65,628 bp · +
petG · NC_059906.1 · 65,810–65,923 bp · +
psaJ · NC_059906.1 · 66,628–66,762 bp · +
rpl33 · NC_059906.1 · 67,223–67,423 bp · +
rps18 · NC_059906.1 · 67,599–67,904 bp · +
rps12 · NC_059906.1 · 137,152–137,948 bp · +
psbB · NC_059906.1 · 71,962–73,488 bp · +
psbT · NC_059906.1 · 73,667–73,774 bp · +
psbH · NC_059906.1 · 74,072–74,293 bp · +
petB · NC_059906.1 · 74,418–75,773 bp · +
petD · NC_059906.1 · 75,985–77,223 bp · +
ycf2 · NC_059906.1 · 85,676–91,888 bp · +
ycf15 · NC_059906.1 · 91,979–92,227 bp · +
trnV-GAC · NC_059906.1 · 98,499–98,570 bp · +
rrn16 · NC_059906.1 · 98,797–100,286 bp · +
trnI-GAU · NC_059906.1 · 100,586–101,597 bp · +
trnA-UGC · NC_059906.1 · 101,662–102,533 bp · +
rrn23 · NC_059906.1 · 102,694–105,501 bp · +
rrn4.5 · NC_059906.1 · 105,603–105,705 bp · +
rrn5 · NC_059906.1 · 105,958–106,078 bp · +
trnR-ACG · NC_059906.1 · 106,315–106,388 bp · +
ycf1 · NC_059906.1 · 107,346–112,922 bp · +
rps15 · NC_059906.1 · 113,329–113,601 bp · +
ndhH · NC_059906.1 · 113,706–114,887 bp · +
ndhA · NC_059906.1 · 114,889–116,974 bp · +
ndhI · NC_059906.1 · 117,055–117,561 bp · +
ndhG · NC_059906.1 · 117,914–118,444 bp · +
ndhE · NC_059906.1 · 118,645–118,950 bp · +
psaC · NC_059906.1 · 119,201–119,446 bp · +
ndhD · NC_059906.1 · 119,566–121,068 bp · +
ndhF · NC_059906.1 · 123,447–125,663 bp · +
trnN-GUU · NC_059906.1 · 127,070–127,141 bp · +
rrn16 · NC_059906.1 · 133,800–135,289 bp · +
rps7 · NC_059906.1 · 138,002–138,469 bp · +
ndhB · NC_059906.1 · 138,745–140,957 bp · +
trnL-CAA · NC_059906.1 · 141,511–141,591 bp · +
trnI-CAU · NC_059906.1 · 148,505–148,578 bp · +
rpl23 · NC_059906.1 · 148,744–149,025 bp · +
rpl2 · NC_059906.1 · 149,044–150,520 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Rotheca myricoides
ANNOTATED PLASTOME
NC_059906.1
150,596 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37649 75298 112947 150596 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnP-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rps15 ndhH ndhA ndhI ndhG ndhE psaC ndhD ndhF trnN-GUU rrn16 rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ccsA trnL-UAG rpl32 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 7 80 74 Locate
psbA gene − 548 1606 1059 Locate
trnK-UUU gene − 1849 4437 2589 Locate
matK gene − 2151 3686 1536 Locate
rps16 gene − 5106 6246 1141 Locate
trnQ-UUG gene − 7398 7469 72 Locate
psbK gene + 7800 7985 186 Locate
psbI gene + 8374 8484 111 Locate
trnS-GCU gene − 8576 8663 88 Locate
trnG-UCC gene + 9353 10115 763 Locate
trnR-UCU gene + 10284 10355 72 Locate
atpA gene − 10465 11988 1524 Locate
atpF gene − 12075 13318 1244 Locate
atpH gene − 13693 13938 246 Locate
atpI gene − 14926 15669 744 Locate
rps2 gene − 15897 16607 711 Locate
rpoC2 gene − 16846 21003 4158 Locate
rpoC1 gene − 21170 24008 2839 Locate
rpoB gene − 24038 27241 3204 Locate
trnC-GCA gene + 28390 28460 71 Locate
petN gene + 29280 29369 90 Locate
psbM gene − 30009 30113 105 Locate
trnD-GUC gene − 30638 30711 74 Locate
trnY-GUA gene − 30819 30902 84 Locate
trnE-UUC gene − 30962 31034 73 Locate
trnT-GGU gene + 31559 31630 72 Locate
psbD gene + 32990 34051 1062 Locate
psbC gene + 33999 35420 1422 Locate
trnS-UGA gene − 35663 35755 93 Locate
psbZ gene + 36083 36271 189 Locate
trnG-GCC gene + 36546 36616 71 Locate
trnM-CAU gene − 36748 36821 74 Locate
rps14 gene − 36971 37273 303 Locate
psaB gene − 37402 39606 2205 Locate
psaA gene − 39632 41884 2253 Locate
ycf3 gene − 42612 44573 1962 Locate
trnS-GGA gene + 45189 45275 87 Locate
rps4 gene − 45552 46157 606 Locate
trnT-UGU gene − 46439 46511 73 Locate
trnL-UAA gene + 47188 47751 564 Locate
trnP-GAA gene + 48062 48134 73 Locate
ndhJ gene − 48748 49224 477 Locate
ndhK gene − 49337 49993 657 Locate
ndhC gene − 50047 50409 363 Locate
trnV-UAC gene − 51272 51936 665 Locate
trnM-CAU gene + 52112 52184 73 Locate
atpE gene − 52401 52802 402 Locate
atpB gene − 52799 54295 1497 Locate
rbcL gene + 55078 56511 1434 Locate
accD gene + 57163 58680 1518 Locate
psaI gene + 59351 59461 111 Locate
ycf4 gene + 59892 60446 555 Locate
cemA gene + 61099 61788 690 Locate
petA gene + 61992 62954 963 Locate
psbJ gene − 63907 64029 123 Locate
psbL gene − 64163 64279 117 Locate
psbF gene − 64303 64422 120 Locate
psbE gene − 64437 64688 252 Locate
petL gene + 65533 65628 96 Locate
petG gene + 65810 65923 114 Locate
trnW-CCA gene − 66035 66108 74 Locate
trnP-UGG gene − 66271 66344 74 Locate
psaJ gene + 66628 66762 135 Locate
rpl33 gene + 67223 67423 201 Locate
rps18 gene + 67599 67904 306 Locate
rpl20 gene − 68140 68526 387 Locate
rps12 gene − 69342 69455 114 Locate
clpP gene − 69586 71530 1945 Locate
psbB gene + 71962 73488 1527 Locate
psbT gene + 73667 73774 108 Locate
psbN gene − 73835 73966 132 Locate
psbH gene + 74072 74293 222 Locate
petB gene + 74418 75773 1356 Locate
petD gene + 75985 77223 1239 Locate
rpoA gene − 77387 78400 1014 Locate
rps11 gene − 78472 78888 417 Locate
rpl36 gene − 78990 79103 114 Locate
infA gene − 79198 79431 234 Locate
rps8 gene − 79553 79957 405 Locate
rpl14 gene − 80181 80549 369 Locate
rpl16 gene − 80675 81920 1246 Locate
rps3 gene − 82079 82747 669 Locate
rpl22 gene − 82732 83196 465 Locate
rps19 gene − 83243 83521 279 Locate
rpl2 gene − 83566 85042 1477 Locate
rpl23 gene − 85061 85342 282 Locate
trnI-CAU gene − 85508 85581 74 Locate
ycf2 gene + 85676 91888 6213 Locate
ycf15 gene + 91979 92227 249 Locate
trnL-CAA gene − 92495 92575 81 Locate
ndhB gene − 93129 95341 2213 Locate
rps7 gene − 95617 96084 468 Locate
rps12 gene − 96138 96934 797 Locate
trnV-GAC gene + 98499 98570 72 Locate
rrn16 gene + 98797 100286 1490 Locate
trnI-GAU gene + 100586 101597 1012 Locate
trnA-UGC gene + 101662 102533 872 Locate
rrn23 gene + 102694 105501 2808 Locate
rrn4.5 gene + 105603 105705 103 Locate
rrn5 gene + 105958 106078 121 Locate
trnR-ACG gene + 106315 106388 74 Locate
trnN-GUU gene − 106945 107016 72 Locate
ycf1 gene + 107346 112922 5577 Locate
rps15 gene + 113329 113601 273 Locate
ndhH gene + 113706 114887 1182 Locate
ndhA gene + 114889 116974 2086 Locate
ndhI gene + 117055 117561 507 Locate
ndhG gene + 117914 118444 531 Locate
ndhE gene + 118645 118950 306 Locate
psaC gene + 119201 119446 246 Locate
ndhD gene + 119566 121068 1503 Locate
ccsA gene − 121285 122256 972 Locate
trnL-UAG gene − 122341 122420 80 Locate
rpl32 gene − 122760 122936 177 Locate
ndhF gene + 123447 125663 2217 Locate
ycf1 gene − 125662 126740 1079 Locate
trnN-GUU gene + 127070 127141 72 Locate
trnR-ACG gene − 127698 127771 74 Locate
rrn5 gene − 128008 128128 121 Locate
rrn4.5 gene − 128381 128483 103 Locate
rrn23 gene − 128585 131392 2808 Locate
trnA-UGC gene − 131553 132424 872 Locate
trnI-GAU gene − 132489 133500 1012 Locate
rrn16 gene + 133800 135289 1490 Locate
trnV-GAC gene − 135516 135587 72 Locate
rps12 gene + 137152 137948 797 Locate
rps7 gene + 138002 138469 468 Locate
ndhB gene + 138745 140957 2213 Locate
trnL-CAA gene + 141511 141591 81 Locate
ycf15 gene − 141859 142107 249 Locate
ycf2 gene − 142198 148410 6213 Locate
trnI-CAU gene + 148505 148578 74 Locate
rpl23 gene + 148744 149025 282 Locate
rpl2 gene + 149044 150520 1477 Locate
Status Available
Accession NC_059906.1
Length 150,596 bp
GC content 38.6%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources