Rotheca serrata chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
trnR-UCU · MN814867.1 · 1,634–1,705 bp · −
trnG-UCC · MN814867.1 · 1,879–2,641 bp · −
psbI · MN814867.1 · 3,509–3,619 bp · −
psbK · MN814867.1 · 4,010–4,195 bp · −
rpl2 · MN814867.1 · 12,052–13,528 bp · −
rpl23 · MN814867.1 · 13,547–13,828 bp · −
trnI-CAU · MN814867.1 · 13,994–14,067 bp · −
trnL-CAA · MN814867.1 · 20,999–21,079 bp · −
ndhB · MN814867.1 · 21,528–23,740 bp · −
rps7 · MN814867.1 · 24,016–24,483 bp · −
rps12 · MN814867.1 · 24,537–25,333 bp · −
rrn16 · MN814867.1 · 27,186–28,675 bp · −
trnN-GUU · MN814867.1 · 35,316–35,387 bp · −
ndhF · MN814867.1 · 36,798–39,017 bp · −
ndhD · MN814867.1 · 41,382–42,884 bp · −
psaC · MN814867.1 · 43,004–43,249 bp · −
ndhE · MN814867.1 · 43,500–43,805 bp · −
ndhG · MN814867.1 · 44,006–44,536 bp · −
ndhI · MN814867.1 · 44,889–45,395 bp · −
ndhA · MN814867.1 · 45,476–47,550 bp · −
ndhH · MN814867.1 · 47,552–48,733 bp · −
rps15 · MN814867.1 · 48,838–49,110 bp · −
ycf1 · MN814867.1 · 49,503–55,079 bp · −
trnR-ACG · MN814867.1 · 56,031–56,104 bp · −
rrn5 · MN814867.1 · 56,341–56,461 bp · −
rrn4.5 · MN814867.1 · 56,714–56,816 bp · −
rrn23 · MN814867.1 · 56,918–59,725 bp · −
trnA-UGC · MN814867.1 · 59,884–60,755 bp · −
trnI-GAU · MN814867.1 · 60,820–61,821 bp · −
rrn16 · MN814867.1 · 62,121–63,610 bp · −
trnV-GAC · MN814867.1 · 63,837–63,908 bp · −
ycf2 · MN814867.1 · 70,404–76,634 bp · −
petD · MN814867.1 · 85,088–86,327 bp · −
petB · MN814867.1 · 86,539–87,896 bp · −
psbH · MN814867.1 · 88,021–88,242 bp · −
psbT · MN814867.1 · 88,545–88,652 bp · −
psbB · MN814867.1 · 88,833–90,359 bp · −
rps18 · MN814867.1 · 94,439–94,744 bp · −
rpl33 · MN814867.1 · 94,921–95,121 bp · −
psaJ · MN814867.1 · 95,582–95,716 bp · −
petG · MN814867.1 · 96,421–96,534 bp · −
petL · MN814867.1 · 96,716–96,811 bp · −
petA · MN814867.1 · 99,404–100,366 bp · −
cemA · MN814867.1 · 100,570–101,259 bp · −
ycf4 · MN814867.1 · 101,912–102,466 bp · −
psaI · MN814867.1 · 102,897–103,007 bp · −
accD · MN814867.1 · 103,678–105,195 bp · −
rbcL · MN814867.1 · 105,851–107,284 bp · −
trnM-CAU · MN814867.1 · 110,179–110,251 bp · −
trnP-GAA · MN814867.1 · 114,234–114,306 bp · −
trnL-UAA · MN814867.1 · 114,617–115,179 bp · −
trnS-GGA · MN814867.1 · 117,092–117,178 bp · −
trnG-GCC · MN814867.1 · 125,736–125,806 bp · −
psbZ · MN814867.1 · 126,081–126,269 bp · −
psbC · MN814867.1 · 126,925–128,346 bp · −
psbD · MN814867.1 · 128,294–129,355 bp · −
trnT-GGU · MN814867.1 · 130,717–130,788 bp · −
petN · MN814867.1 · 132,984–133,073 bp · −
trnC-GCA · MN814867.1 · 133,893–133,963 bp · −
atpA · MN814867.1 · 1–1,524 bp · +
trnS-GCU · MN814867.1 · 3,329–3,416 bp · +
trnQ-UUG · MN814867.1 · 4,525–4,596 bp · +
trnK-UUU · MN814867.1 · 7,542–10,130 bp · +
matK · MN814867.1 · 8,293–9,828 bp · +
psbA · MN814867.1 · 10,373–11,431 bp · +
trnH-GUG · MN814867.1 · 11,896–11,969 bp · +
ycf2 · MN814867.1 · 14,162–20,392 bp · +
rps12 · MN814867.1 · 92,881–92,994 bp · +
trnV-GAC · MN814867.1 · 26,888–26,959 bp · +
trnI-GAU · MN814867.1 · 28,975–29,976 bp · +
trnA-UGC · MN814867.1 · 30,041–30,912 bp · +
rrn23 · MN814867.1 · 31,071–33,878 bp · +
rrn4.5 · MN814867.1 · 33,980–34,082 bp · +
rrn5 · MN814867.1 · 34,335–34,455 bp · +
trnR-ACG · MN814867.1 · 34,692–34,765 bp · +
ycf1 · MN814867.1 · 35,717–36,811 bp · +
rpl32 · MN814867.1 · 39,515–39,691 bp · +
trnL-UAG · MN814867.1 · 40,031–40,110 bp · +
ccsA · MN814867.1 · 40,195–41,166 bp · +
trnN-GUU · MN814867.1 · 55,409–55,480 bp · +
rps12 · MN814867.1 · 65,463–66,259 bp · +
rps7 · MN814867.1 · 66,313–66,780 bp · +
ndhB · MN814867.1 · 67,056–69,268 bp · +
trnL-CAA · MN814867.1 · 69,717–69,797 bp · +
trnI-CAU · MN814867.1 · 76,729–76,802 bp · +
rpl23 · MN814867.1 · 76,968–77,249 bp · +
rpl2 · MN814867.1 · 77,268–78,744 bp · +
rps19 · MN814867.1 · 78,789–79,067 bp · +
rpl22 · MN814867.1 · 79,114–79,578 bp · +
rps3 · MN814867.1 · 79,563–80,231 bp · +
rpl16 · MN814867.1 · 80,390–81,635 bp · +
rpl14 · MN814867.1 · 81,761–82,129 bp · +
rps8 · MN814867.1 · 82,354–82,758 bp · +
infA · MN814867.1 · 82,880–83,113 bp · +
rpl36 · MN814867.1 · 83,208–83,321 bp · +
rps11 · MN814867.1 · 83,423–83,839 bp · +
rpoA · MN814867.1 · 83,911–84,924 bp · +
psbN · MN814867.1 · 88,353–88,484 bp · +
clpP · MN814867.1 · 90,801–92,750 bp · +
rpl20 · MN814867.1 · 93,817–94,203 bp · +
trnP-UGG · MN814867.1 · 96,000–96,073 bp · +
trnW-CCA · MN814867.1 · 96,236–96,309 bp · +
psbE · MN814867.1 · 97,656–97,907 bp · +
psbF · MN814867.1 · 97,922–98,041 bp · +
psbL · MN814867.1 · 98,065–98,181 bp · +
psbJ · MN814867.1 · 98,315–98,437 bp · +
atpB · MN814867.1 · 108,068–109,564 bp · +
atpE · MN814867.1 · 109,561–109,962 bp · +
trnV-UAC · MN814867.1 · 110,427–111,090 bp · +
ndhC · MN814867.1 · 111,959–112,321 bp · +
ndhK · MN814867.1 · 112,375–113,031 bp · +
ndhJ · MN814867.1 · 113,144–113,620 bp · +
trnT-UGU · MN814867.1 · 115,856–115,928 bp · +
rps4 · MN814867.1 · 116,210–116,815 bp · +
ycf3 · MN814867.1 · 117,792–119,753 bp · +
psaA · MN814867.1 · 120,474–122,726 bp · +
psaB · MN814867.1 · 122,752–124,956 bp · +
rps14 · MN814867.1 · 125,085–125,387 bp · +
trnM-CAU · MN814867.1 · 125,537–125,610 bp · +
trnS-UGA · MN814867.1 · 126,589–126,681 bp · +
trnE-UUC · MN814867.1 · 131,319–131,391 bp · +
trnY-GUA · MN814867.1 · 131,451–131,534 bp · +
trnD-GUC · MN814867.1 · 131,642–131,715 bp · +
psbM · MN814867.1 · 132,240–132,344 bp · +
rpoB · MN814867.1 · 135,112–138,315 bp · +
rpoC1 · MN814867.1 · 138,345–141,183 bp · +
rpoC2 · MN814867.1 · 141,350–145,531 bp · +
rps2 · MN814867.1 · 145,744–146,454 bp · +
atpI · MN814867.1 · 146,700–147,443 bp · +
atpH · MN814867.1 · 148,420–148,665 bp · +
atpF · MN814867.1 · 149,040–150,286 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Rotheca serrata
ANNOTATED PLASTOME
MN814867.1
150,371 bp · 130 genes
Gene function
ATP synthase
Transfer RNA
Photosystem II
Other
Ribosomal protein
NADH dehydrogenase
Ribosomal RNA
Photosystem I
RNA polymerase
Cytochrome
0 37593 75186 112778 150371 bp
Forward strand 5′ → 3′
atpA trnS-GCU trnQ-UUG trnK-UUU matK psbA trnH-GUG ycf2 trnV-GAC trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2 rps19 rpl22 rps3 rpl16 rpl14 rps8 infA rpl36 rps11 rpoA psbN clpP rps12 rpl20 trnP-UGG trnW-CCA psbE psbF psbL psbJ atpB atpE trnV-UAC ndhC ndhK ndhJ trnT-UGU rps4 ycf3 psaA psaB rps14 trnM-CAU trnS-UGA trnE-UUC trnY-GUA trnD-GUC psbM rpoB rpoC1 rpoC2 rps2 atpI atpH atpF
trnR-UCU trnG-UCC psbI psbK rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 rrn16 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf2 petD petB psbH psbT psbB rps18 rpl33 psaJ petG petL petA cemA ycf4 psaI accD rbcL trnM-CAU trnP-GAA trnL-UAA trnS-GGA trnG-GCC psbZ psbC psbD trnT-GGU petN trnC-GCA
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
131 local segments
Gene Type Group Strand Start End Length
atpA gene + 1 1524 1524 Locate
trnR-UCU gene − 1634 1705 72 Locate
trnG-UCC gene − 1879 2641 763 Locate
trnS-GCU gene + 3329 3416 88 Locate
psbI gene − 3509 3619 111 Locate
psbK gene − 4010 4195 186 Locate
trnQ-UUG gene + 4525 4596 72 Locate
trnK-UUU gene + 7542 10130 2589 Locate
matK gene + 8293 9828 1536 Locate
psbA gene + 10373 11431 1059 Locate
trnH-GUG gene + 11896 11969 74 Locate
rpl2 gene − 12052 13528 1477 Locate
rpl23 gene − 13547 13828 282 Locate
trnI-CAU gene − 13994 14067 74 Locate
ycf2 gene + 14162 20392 6231 Locate
trnL-CAA gene − 20999 21079 81 Locate
ndhB gene − 21528 23740 2213 Locate
rps7 gene − 24016 24483 468 Locate
rps12 gene − 24537 25333 797 Locate
trnV-GAC gene + 26888 26959 72 Locate
rrn16 gene − 27186 28675 1490 Locate
trnI-GAU gene + 28975 29976 1002 Locate
trnA-UGC gene + 30041 30912 872 Locate
rrn23 gene + 31071 33878 2808 Locate
rrn4.5 gene + 33980 34082 103 Locate
rrn5 gene + 34335 34455 121 Locate
trnR-ACG gene + 34692 34765 74 Locate
trnN-GUU gene − 35316 35387 72 Locate
ycf1 gene + 35717 36811 1095 Locate
ndhF gene − 36798 39017 2220 Locate
rpl32 gene + 39515 39691 177 Locate
trnL-UAG gene + 40031 40110 80 Locate
ccsA gene + 40195 41166 972 Locate
ndhD gene − 41382 42884 1503 Locate
psaC gene − 43004 43249 246 Locate
ndhE gene − 43500 43805 306 Locate
ndhG gene − 44006 44536 531 Locate
ndhI gene − 44889 45395 507 Locate
ndhA gene − 45476 47550 2075 Locate
ndhH gene − 47552 48733 1182 Locate
rps15 gene − 48838 49110 273 Locate
ycf1 gene − 49503 55079 5577 Locate
trnN-GUU gene + 55409 55480 72 Locate
trnR-ACG gene − 56031 56104 74 Locate
rrn5 gene − 56341 56461 121 Locate
rrn4.5 gene − 56714 56816 103 Locate
rrn23 gene − 56918 59725 2808 Locate
trnA-UGC gene − 59884 60755 872 Locate
trnI-GAU gene − 60820 61821 1002 Locate
rrn16 gene − 62121 63610 1490 Locate
trnV-GAC gene − 63837 63908 72 Locate
rps12 gene + 65463 66259 797 Locate
rps7 gene + 66313 66780 468 Locate
ndhB gene + 67056 69268 2213 Locate
trnL-CAA gene + 69717 69797 81 Locate
ycf2 gene − 70404 76634 6231 Locate
trnI-CAU gene + 76729 76802 74 Locate
rpl23 gene + 76968 77249 282 Locate
rpl2 gene + 77268 78744 1477 Locate
rps19 gene + 78789 79067 279 Locate
rpl22 gene + 79114 79578 465 Locate
rps3 gene + 79563 80231 669 Locate
rpl16 gene + 80390 81635 1246 Locate
rpl14 gene + 81761 82129 369 Locate
rps8 gene + 82354 82758 405 Locate
infA gene + 82880 83113 234 Locate
rpl36 gene + 83208 83321 114 Locate
rps11 gene + 83423 83839 417 Locate
rpoA gene + 83911 84924 1014 Locate
petD gene − 85088 86327 1240 Locate
petB gene − 86539 87896 1358 Locate
psbH gene − 88021 88242 222 Locate
psbN gene + 88353 88484 132 Locate
psbT gene − 88545 88652 108 Locate
psbB gene − 88833 90359 1527 Locate
clpP gene + 90801 92750 1950 Locate
rps12 gene + 92881 92994 114 Locate
rpl20 gene + 93817 94203 387 Locate
rps18 gene − 94439 94744 306 Locate
rpl33 gene − 94921 95121 201 Locate
psaJ gene − 95582 95716 135 Locate
trnP-UGG gene + 96000 96073 74 Locate
trnW-CCA gene + 96236 96309 74 Locate
petG gene − 96421 96534 114 Locate
petL gene − 96716 96811 96 Locate
psbE gene + 97656 97907 252 Locate
psbF gene + 97922 98041 120 Locate
psbL gene + 98065 98181 117 Locate
psbJ gene + 98315 98437 123 Locate
petA gene − 99404 100366 963 Locate
cemA gene − 100570 101259 690 Locate
ycf4 gene − 101912 102466 555 Locate
psaI gene − 102897 103007 111 Locate
accD gene − 103678 105195 1518 Locate
rbcL gene − 105851 107284 1434 Locate
atpB gene + 108068 109564 1497 Locate
atpE gene + 109561 109962 402 Locate
trnM-CAU gene − 110179 110251 73 Locate
trnV-UAC gene + 110427 111090 664 Locate
ndhC gene + 111959 112321 363 Locate
ndhK gene + 112375 113031 657 Locate
ndhJ gene + 113144 113620 477 Locate
trnP-GAA gene − 114234 114306 73 Locate
trnL-UAA gene − 114617 115179 563 Locate
trnT-UGU gene + 115856 115928 73 Locate
rps4 gene + 116210 116815 606 Locate
trnS-GGA gene − 117092 117178 87 Locate
ycf3 gene + 117792 119753 1962 Locate
psaA gene + 120474 122726 2253 Locate
psaB gene + 122752 124956 2205 Locate
rps14 gene + 125085 125387 303 Locate
trnM-CAU gene + 125537 125610 74 Locate
trnG-GCC gene − 125736 125806 71 Locate
psbZ gene − 126081 126269 189 Locate
trnS-UGA gene + 126589 126681 93 Locate
psbC gene − 126925 128346 1422 Locate
psbD gene − 128294 129355 1062 Locate
trnT-GGU gene − 130717 130788 72 Locate
trnE-UUC gene + 131319 131391 73 Locate
trnY-GUA gene + 131451 131534 84 Locate
trnD-GUC gene + 131642 131715 74 Locate
psbM gene + 132240 132344 105 Locate
petN gene − 132984 133073 90 Locate
trnC-GCA gene − 133893 133963 71 Locate
rpoB gene + 135112 138315 3204 Locate
rpoC1 gene + 138345 141183 2839 Locate
rpoC2 gene + 141350 145531 4182 Locate
rps2 gene + 145744 146454 711 Locate
atpI gene + 146700 147443 744 Locate
atpH gene + 148420 148665 246 Locate
atpF gene + 149040 150286 1247 Locate
Status Available
Accession MN814867.1
Length 150,371 bp
GC content 38.6%
Annotated genes 130
Gene sequence records 8
Atp Synthase 6 Translation Rna 37 Photosystem Ii 15 Other 13 Ribosomal Protein 25 Nad Dehydrogenase 12 Ribosomal Rna 8 Photosystem I 5 Rna Polymerase 4 Cytochrome 6
SSR 0
Direct 0
Inverted 0
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources