Salvia apiana chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
LSC
IR
SSC
IR
trnH-GUG · NC_084049.1 · 1–74 bp · −
psbA · NC_084049.1 · 392–1,450 bp · −
trnK-UUU · NC_084049.1 · 1,677–4,255 bp · −
matK · NC_084049.1 · 1,989–3,518 bp · −
rps16 · NC_084049.1 · 4,806–5,912 bp · −
trnQ-UUG · NC_084049.1 · 6,859–6,930 bp · −
trnS-GCU · NC_084049.1 · 8,187–8,274 bp · −
atpA · NC_084049.1 · 10,076–11,599 bp · −
atpF · NC_084049.1 · 11,701–12,943 bp · −
atpH · NC_084049.1 · 13,216–13,461 bp · −
atpI · NC_084049.1 · 14,491–15,234 bp · −
rps2 · NC_084049.1 · 15,459–16,169 bp · −
rpoC2 · NC_084049.1 · 16,371–20,558 bp · −
rpoC1 · NC_084049.1 · 20,724–23,538 bp · −
rpoB · NC_084049.1 · 23,565–26,777 bp · −
psbM · NC_084049.1 · 29,237–29,341 bp · −
trnD-GUC · NC_084049.1 · 29,856–29,929 bp · −
trnY-GUA · NC_084049.1 · 30,040–30,123 bp · −
trnE-UUC · NC_084049.1 · 30,195–30,267 bp · −
trnS-UGA · NC_084049.1 · 34,939–35,031 bp · −
trnfM-CAU · NC_084049.1 · 36,048–36,121 bp · −
rps14 · NC_084049.1 · 36,266–36,568 bp · −
psaB · NC_084049.1 · 36,691–38,895 bp · −
psaA · NC_084049.1 · 38,921–41,173 bp · −
ycf3 · NC_084049.1 · 41,949–43,893 bp · −
rps4 · NC_084049.1 · 45,088–45,693 bp · −
trnT-UGU · NC_084049.1 · 46,054–46,126 bp · −
ndhJ · NC_084049.1 · 48,301–48,777 bp · −
ndhK · NC_084049.1 · 48,888–49,565 bp · −
ndhC · NC_084049.1 · 49,617–49,979 bp · −
trnV-UAC · NC_084049.1 · 50,925–51,565 bp · −
atpE · NC_084049.1 · 52,023–52,424 bp · −
atpB · NC_084049.1 · 52,421–53,917 bp · −
psbJ · NC_084049.1 · 63,474–63,596 bp · −
psbL · NC_084049.1 · 63,731–63,847 bp · −
psbF · NC_084049.1 · 63,871–63,990 bp · −
psbE · NC_084049.1 · 64,005–64,256 bp · −
trnW-CCA · NC_084049.1 · 65,576–65,649 bp · −
trnP-UGG · NC_084049.1 · 65,824–65,897 bp · −
rpl20 · NC_084049.1 · 67,673–68,059 bp · −
rps12 · NC_084049.1 · 68,858–68,971 bp · −
rps12 · NC_084049.1 · 96,243–97,026 bp · −
clpP · NC_084049.1 · 69,095–71,001 bp · −
psbN · NC_084049.1 · 73,312–73,443 bp · −
rpoA · NC_084049.1 · 76,831–77,838 bp · −
rps11 · NC_084049.1 · 77,908–78,324 bp · −
rpl36 · NC_084049.1 · 78,435–78,548 bp · −
infA · NC_084049.1 · 78,648–78,881 bp · −
rps8 · NC_084049.1 · 79,001–79,405 bp · −
rpl14 · NC_084049.1 · 79,591–79,959 bp · −
rpl16 · NC_084049.1 · 80,091–81,360 bp · −
rps3 · NC_084049.1 · 81,513–82,175 bp · −
rpl22 · NC_084049.1 · 82,160–82,627 bp · −
rps19 · NC_084049.1 · 82,697–82,975 bp · −
rpl2 · NC_084049.1 · 83,035–84,520 bp · −
rpl23 · NC_084049.1 · 84,539–84,820 bp · −
trnI-CAU · NC_084049.1 · 84,986–85,059 bp · −
trnL-CAA · NC_084049.1 · 92,605–92,685 bp · −
ndhB · NC_084049.1 · 93,246–95,393 bp · −
rps7 · NC_084049.1 · 95,722–96,189 bp · −
trnN-GUU · NC_084049.1 · 107,072–107,143 bp · −
ndhF · NC_084049.1 · 108,491–110,722 bp · −
ndhD · NC_084049.1 · 113,305–114,846 bp · −
psaC · NC_084049.1 · 114,946–115,191 bp · −
ndhE · NC_084049.1 · 115,442–115,747 bp · −
ndhG · NC_084049.1 · 115,960–116,490 bp · −
ndhI · NC_084049.1 · 116,870–117,376 bp · −
ndhA · NC_084049.1 · 117,452–119,554 bp · −
ndhH · NC_084049.1 · 119,556–120,791 bp · −
rps15 · NC_084049.1 · 120,837–121,109 bp · −
ycf1 · NC_084049.1 · 121,527–127,172 bp · −
trnR-ACG · NC_084049.1 · 127,965–128,038 bp · −
rrn5 · NC_084049.1 · 128,282–128,402 bp · −
rrn4.5 · NC_084049.1 · 128,658–128,760 bp · −
rrn23 · NC_084049.1 · 128,861–131,669 bp · −
trnA-UGC · NC_084049.1 · 131,829–132,705 bp · −
trnI-GAU · NC_084049.1 · 132,770–133,788 bp · −
rrn16 · NC_084049.1 · 134,087–135,577 bp · −
trnV-GAC · NC_084049.1 · 135,804–135,875 bp · −
ycf15 · NC_084049.1 · 142,190–142,438 bp · −
ycf2 · NC_084049.1 · 142,529–149,386 bp · −
psbK · NC_084049.1 · 7,325–7,510 bp · +
psbI · NC_084049.1 · 7,909–8,019 bp · +
trnG-UCC · NC_084049.1 · 9,583–9,716 bp · +
trnR-UCU · NC_084049.1 · 9,897–9,968 bp · +
trnC-GCA · NC_084049.1 · 27,925–27,995 bp · +
petN · NC_084049.1 · 28,151–28,240 bp · +
trnT-GGU · NC_084049.1 · 30,826–30,897 bp · +
psbD · NC_084049.1 · 32,262–33,323 bp · +
psbC · NC_084049.1 · 33,271–34,692 bp · +
psbZ · NC_084049.1 · 35,354–35,542 bp · +
trnG-GCC · NC_084049.1 · 35,820–35,890 bp · +
trnS-GGA · NC_084049.1 · 44,718–44,804 bp · +
trnL-UAA · NC_084049.1 · 46,804–47,387 bp · +
trnF-GAA · NC_084049.1 · 47,690–47,762 bp · +
trnM-CAU · NC_084049.1 · 51,746–51,818 bp · +
rbcL · NC_084049.1 · 54,695–56,149 bp · +
accD · NC_084049.1 · 56,849–58,330 bp · +
psaI · NC_084049.1 · 58,795–58,905 bp · +
ycf4 · NC_084049.1 · 59,351–59,905 bp · +
cemA · NC_084049.1 · 60,555–61,244 bp · +
petA · NC_084049.1 · 61,470–62,432 bp · +
petL · NC_084049.1 · 65,074–65,169 bp · +
petG · NC_084049.1 · 65,348–65,461 bp · +
psaJ · NC_084049.1 · 66,182–66,316 bp · +
rpl33 · NC_084049.1 · 66,756–66,956 bp · +
rps18 · NC_084049.1 · 67,134–67,439 bp · +
rps12 · NC_084049.1 · 137,508–138,291 bp · +
psbB · NC_084049.1 · 71,438–72,964 bp · +
psbT · NC_084049.1 · 73,145–73,246 bp · +
psbH · NC_084049.1 · 73,549–73,770 bp · +
petB · NC_084049.1 · 73,896–75,276 bp · +
petD · NC_084049.1 · 75,464–76,654 bp · +
ycf2 · NC_084049.1 · 85,148–92,005 bp · +
ycf15 · NC_084049.1 · 92,096–92,344 bp · +
trnV-GAC · NC_084049.1 · 98,659–98,730 bp · +
rrn16 · NC_084049.1 · 98,957–100,447 bp · +
trnI-GAU · NC_084049.1 · 100,746–101,764 bp · +
trnA-UGC · NC_084049.1 · 101,829–102,705 bp · +
rrn23 · NC_084049.1 · 102,865–105,673 bp · +
rrn4.5 · NC_084049.1 · 105,774–105,876 bp · +
rrn5 · NC_084049.1 · 106,132–106,252 bp · +
trnR-ACG · NC_084049.1 · 106,496–106,569 bp · +
ycf1 · NC_084049.1 · 107,362–108,522 bp · +
rpl32 · NC_084049.1 · 111,152–111,322 bp · +
trnL-UAG · NC_084049.1 · 111,939–112,018 bp · +
ccsA · NC_084049.1 · 112,115–113,092 bp · +
trnN-GUU · NC_084049.1 · 127,391–127,462 bp · +
rps7 · NC_084049.1 · 138,345–138,812 bp · +
ndhB · NC_084049.1 · 139,141–141,288 bp · +
trnL-CAA · NC_084049.1 · 141,849–141,929 bp · +
trnI-CAU · NC_084049.1 · 149,475–149,548 bp · +
rpl23 · NC_084049.1 · 149,714–149,995 bp · +
rpl2 · NC_084049.1 · 150,014–151,499 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Salvia apiana
ANNOTATED PLASTOME
NC_084049.1
151,550 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37888 75775 113662 151550 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 1 74 74 Locate
psbA gene − 392 1450 1059 Locate
trnK-UUU gene − 1677 4255 2579 Locate
matK gene − 1989 3518 1530 Locate
rps16 gene − 4806 5912 1107 Locate
trnQ-UUG gene − 6859 6930 72 Locate
psbK gene + 7325 7510 186 Locate
psbI gene + 7909 8019 111 Locate
trnS-GCU gene − 8187 8274 88 Locate
trnG-UCC gene + 9583 9716 134 Locate
trnR-UCU gene + 9897 9968 72 Locate
atpA gene − 10076 11599 1524 Locate
atpF gene − 11701 12943 1243 Locate
atpH gene − 13216 13461 246 Locate
atpI gene − 14491 15234 744 Locate
rps2 gene − 15459 16169 711 Locate
rpoC2 gene − 16371 20558 4188 Locate
rpoC1 gene − 20724 23538 2815 Locate
rpoB gene − 23565 26777 3213 Locate
trnC-GCA gene + 27925 27995 71 Locate
petN gene + 28151 28240 90 Locate
psbM gene − 29237 29341 105 Locate
trnD-GUC gene − 29856 29929 74 Locate
trnY-GUA gene − 30040 30123 84 Locate
trnE-UUC gene − 30195 30267 73 Locate
trnT-GGU gene + 30826 30897 72 Locate
psbD gene + 32262 33323 1062 Locate
psbC gene + 33271 34692 1422 Locate
trnS-UGA gene − 34939 35031 93 Locate
psbZ gene + 35354 35542 189 Locate
trnG-GCC gene + 35820 35890 71 Locate
trnfM-CAU gene − 36048 36121 74 Locate
rps14 gene − 36266 36568 303 Locate
psaB gene − 36691 38895 2205 Locate
psaA gene − 38921 41173 2253 Locate
ycf3 gene − 41949 43893 1945 Locate
trnS-GGA gene + 44718 44804 87 Locate
rps4 gene − 45088 45693 606 Locate
trnT-UGU gene − 46054 46126 73 Locate
trnL-UAA gene + 46804 47387 584 Locate
trnF-GAA gene + 47690 47762 73 Locate
ndhJ gene − 48301 48777 477 Locate
ndhK gene − 48888 49565 678 Locate
ndhC gene − 49617 49979 363 Locate
trnV-UAC gene − 50925 51565 641 Locate
trnM-CAU gene + 51746 51818 73 Locate
atpE gene − 52023 52424 402 Locate
atpB gene − 52421 53917 1497 Locate
rbcL gene + 54695 56149 1455 Locate
accD gene + 56849 58330 1482 Locate
psaI gene + 58795 58905 111 Locate
ycf4 gene + 59351 59905 555 Locate
cemA gene + 60555 61244 690 Locate
petA gene + 61470 62432 963 Locate
psbJ gene − 63474 63596 123 Locate
psbL gene − 63731 63847 117 Locate
psbF gene − 63871 63990 120 Locate
psbE gene − 64005 64256 252 Locate
petL gene + 65074 65169 96 Locate
petG gene + 65348 65461 114 Locate
trnW-CCA gene − 65576 65649 74 Locate
trnP-UGG gene − 65824 65897 74 Locate
psaJ gene + 66182 66316 135 Locate
rpl33 gene + 66756 66956 201 Locate
rps18 gene + 67134 67439 306 Locate
rpl20 gene − 67673 68059 387 Locate
rps12 gene − 68858 68971 114 Locate
clpP gene − 69095 71001 1907 Locate
psbB gene + 71438 72964 1527 Locate
psbT gene + 73145 73246 102 Locate
psbN gene − 73312 73443 132 Locate
psbH gene + 73549 73770 222 Locate
petB gene + 73896 75276 1381 Locate
petD gene + 75464 76654 1191 Locate
rpoA gene − 76831 77838 1008 Locate
rps11 gene − 77908 78324 417 Locate
rpl36 gene − 78435 78548 114 Locate
infA gene − 78648 78881 234 Locate
rps8 gene − 79001 79405 405 Locate
rpl14 gene − 79591 79959 369 Locate
rpl16 gene − 80091 81360 1270 Locate
rps3 gene − 81513 82175 663 Locate
rpl22 gene − 82160 82627 468 Locate
rps19 gene − 82697 82975 279 Locate
rpl2 gene − 83035 84520 1486 Locate
rpl23 gene − 84539 84820 282 Locate
trnI-CAU gene − 84986 85059 74 Locate
ycf2 gene + 85148 92005 6858 Locate
ycf15 gene + 92096 92344 249 Locate
trnL-CAA gene − 92605 92685 81 Locate
ndhB gene − 93246 95393 2148 Locate
rps7 gene − 95722 96189 468 Locate
rps12 gene − 96243 97026 784 Locate
trnV-GAC gene + 98659 98730 72 Locate
rrn16 gene + 98957 100447 1491 Locate
trnI-GAU gene + 100746 101764 1019 Locate
trnA-UGC gene + 101829 102705 877 Locate
rrn23 gene + 102865 105673 2809 Locate
rrn4.5 gene + 105774 105876 103 Locate
rrn5 gene + 106132 106252 121 Locate
trnR-ACG gene + 106496 106569 74 Locate
trnN-GUU gene − 107072 107143 72 Locate
ycf1 gene + 107362 108522 1161 Locate
ndhF gene − 108491 110722 2232 Locate
rpl32 gene + 111152 111322 171 Locate
trnL-UAG gene + 111939 112018 80 Locate
ccsA gene + 112115 113092 978 Locate
ndhD gene − 113305 114846 1542 Locate
psaC gene − 114946 115191 246 Locate
ndhE gene − 115442 115747 306 Locate
ndhG gene − 115960 116490 531 Locate
ndhI gene − 116870 117376 507 Locate
ndhA gene − 117452 119554 2103 Locate
ndhH gene − 119556 120791 1236 Locate
rps15 gene − 120837 121109 273 Locate
ycf1 gene − 121527 127172 5646 Locate
trnN-GUU gene + 127391 127462 72 Locate
trnR-ACG gene − 127965 128038 74 Locate
rrn5 gene − 128282 128402 121 Locate
rrn4.5 gene − 128658 128760 103 Locate
rrn23 gene − 128861 131669 2809 Locate
trnA-UGC gene − 131829 132705 877 Locate
trnI-GAU gene − 132770 133788 1019 Locate
rrn16 gene − 134087 135577 1491 Locate
trnV-GAC gene − 135804 135875 72 Locate
rps12 gene + 137508 138291 784 Locate
rps7 gene + 138345 138812 468 Locate
ndhB gene + 139141 141288 2148 Locate
trnL-CAA gene + 141849 141929 81 Locate
ycf15 gene − 142190 142438 249 Locate
ycf2 gene − 142529 149386 6858 Locate
trnI-CAU gene + 149475 149548 74 Locate
rpl23 gene + 149714 149995 282 Locate
rpl2 gene + 150014 151499 1486 Locate
Status Available
Accession NC_084049.1
Length 151,550 bp
GC content 38.1%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources