Salvia castanea chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
LSC
IR
SSC
IR
trnH-GUG · NC_067740.1 · 6–79 bp · −
psbA · NC_067740.1 · 390–1,448 bp · −
trnK-UUU · NC_067740.1 · 1,680–4,272 bp · −
matK · NC_067740.1 · 1,979–3,541 bp · −
rps16 · NC_067740.1 · 4,844–5,955 bp · −
trnQ-UUG · NC_067740.1 · 6,921–6,992 bp · −
trnS-GCU · NC_067740.1 · 8,221–8,308 bp · −
atpA · NC_067740.1 · 10,110–11,633 bp · −
atpF · NC_067740.1 · 11,731–12,980 bp · −
atpH · NC_067740.1 · 13,246–13,491 bp · −
atpI · NC_067740.1 · 14,481–15,224 bp · −
rps2 · NC_067740.1 · 15,450–16,160 bp · −
rpoC2 · NC_067740.1 · 16,371–20,558 bp · −
rpoC1 · NC_067740.1 · 20,716–23,536 bp · −
rpoB · NC_067740.1 · 23,563–26,775 bp · −
psbM · NC_067740.1 · 29,246–29,350 bp · −
trnD-GUC · NC_067740.1 · 29,871–29,944 bp · −
trnY-GUA · NC_067740.1 · 30,055–30,138 bp · −
trnE-UUC · NC_067740.1 · 30,204–30,276 bp · −
trnS-UGA · NC_067740.1 · 34,942–35,034 bp · −
trnfM-CAU · NC_067740.1 · 36,075–36,148 bp · −
rps14 · NC_067740.1 · 36,293–36,595 bp · −
psaB · NC_067740.1 · 36,723–38,927 bp · −
psaA · NC_067740.1 · 38,953–41,205 bp · −
ycf3 · NC_067740.1 · 41,915–43,852 bp · −
rps4 · NC_067740.1 · 45,039–45,644 bp · −
trnT-UGU · NC_067740.1 · 46,008–46,080 bp · −
ndhJ · NC_067740.1 · 48,185–48,661 bp · −
ndhK · NC_067740.1 · 48,772–49,449 bp · −
ndhC · NC_067740.1 · 49,501–49,863 bp · −
trnV-UAC · NC_067740.1 · 50,812–51,460 bp · −
atpE · NC_067740.1 · 51,924–52,325 bp · −
atpB · NC_067740.1 · 52,322–53,818 bp · −
psbJ · NC_067740.1 · 63,342–63,464 bp · −
psbL · NC_067740.1 · 63,594–63,710 bp · −
psbF · NC_067740.1 · 63,734–63,853 bp · −
psbE · NC_067740.1 · 63,868–64,119 bp · −
trnW-CCA · NC_067740.1 · 65,428–65,501 bp · −
trnP-UGG · NC_067740.1 · 65,680–65,753 bp · −
rpl20 · NC_067740.1 · 67,521–67,907 bp · −
rps12 · NC_067740.1 · 68,700–68,813 bp · −
rps12 · NC_067740.1 · 96,061–96,854 bp · −
clpP · NC_067740.1 · 68,937–70,847 bp · −
psbN · NC_067740.1 · 73,168–73,299 bp · −
rpoA · NC_067740.1 · 76,676–77,683 bp · −
rps11 · NC_067740.1 · 77,755–78,171 bp · −
rpl36 · NC_067740.1 · 78,281–78,394 bp · −
infA · NC_067740.1 · 78,490–78,723 bp · −
rps8 · NC_067740.1 · 78,850–79,254 bp · −
rpl14 · NC_067740.1 · 79,442–79,810 bp · −
rpl16 · NC_067740.1 · 79,942–81,224 bp · −
rps3 · NC_067740.1 · 81,360–82,022 bp · −
rpl22 · NC_067740.1 · 82,007–82,474 bp · −
rps19 · NC_067740.1 · 82,544–82,822 bp · −
rpl2 · NC_067740.1 · 82,882–84,364 bp · −
rpl23 · NC_067740.1 · 84,383–84,664 bp · −
trnI-CAU · NC_067740.1 · 84,830–84,903 bp · −
trnL-CAA · NC_067740.1 · 92,417–92,497 bp · −
ndhB · NC_067740.1 · 93,058–95,211 bp · −
rps7 · NC_067740.1 · 95,540–96,007 bp · −
trnN-GUU · NC_067740.1 · 106,866–106,937 bp · −
ndhF · NC_067740.1 · 108,291–110,531 bp · −
ndhD · NC_067740.1 · 113,229–114,770 bp · −
psaC · NC_067740.1 · 114,867–115,112 bp · −
ndhE · NC_067740.1 · 115,363–115,665 bp · −
ndhG · NC_067740.1 · 115,883–116,413 bp · −
ndhI · NC_067740.1 · 116,794–117,300 bp · −
ndhA · NC_067740.1 · 117,381–119,475 bp · −
ndhH · NC_067740.1 · 119,477–120,712 bp · −
rps15 · NC_067740.1 · 120,796–121,035 bp · −
ycf1 · NC_067740.1 · 121,452–127,097 bp · −
trnR-ACG · NC_067740.1 · 127,862–127,935 bp · −
rrn5 · NC_067740.1 · 128,179–128,299 bp · −
rrn4.5 · NC_067740.1 · 128,555–128,657 bp · −
rrn23 · NC_067740.1 · 128,758–131,566 bp · −
trnA-UGC · NC_067740.1 · 131,732–132,608 bp · −
trnI-GAU · NC_067740.1 · 132,673–133,685 bp · −
rrn16 · NC_067740.1 · 133,984–135,474 bp · −
trnV-GAC · NC_067740.1 · 135,701–135,772 bp · −
ycf15 · NC_067740.1 · 142,097–142,345 bp · −
ycf2 · NC_067740.1 · 142,428–149,261 bp · −
psbK · NC_067740.1 · 7,379–7,558 bp · +
psbI · NC_067740.1 · 7,955–8,065 bp · +
trnG-UCC · NC_067740.1 · 8,995–9,750 bp · +
trnR-UCU · NC_067740.1 · 9,932–10,003 bp · +
trnC-GCA · NC_067740.1 · 27,923–27,993 bp · +
petN · NC_067740.1 · 28,157–28,246 bp · +
trnT-GGU · NC_067740.1 · 30,815–30,886 bp · +
psbD · NC_067740.1 · 32,265–33,326 bp · +
psbC · NC_067740.1 · 33,274–34,695 bp · +
psbZ · NC_067740.1 · 35,369–35,557 bp · +
trnG-GCC · NC_067740.1 · 35,829–35,899 bp · +
trnS-GGA · NC_067740.1 · 44,670–44,756 bp · +
trnL-UAA · NC_067740.1 · 46,751–47,290 bp · +
trnF-GAA · NC_067740.1 · 47,589–47,661 bp · +
trnM-CAU · NC_067740.1 · 51,641–51,713 bp · +
rbcL · NC_067740.1 · 54,582–56,036 bp · +
accD · NC_067740.1 · 56,736–58,223 bp · +
psaI · NC_067740.1 · 58,698–58,808 bp · +
ycf4 · NC_067740.1 · 59,256–59,810 bp · +
cemA · NC_067740.1 · 60,421–61,110 bp · +
petA · NC_067740.1 · 61,331–62,293 bp · +
petL · NC_067740.1 · 64,926–65,021 bp · +
petG · NC_067740.1 · 65,200–65,313 bp · +
psaJ · NC_067740.1 · 66,005–66,178 bp · +
rpl33 · NC_067740.1 · 66,629–66,829 bp · +
rps18 · NC_067740.1 · 66,995–67,300 bp · +
rps12 · NC_067740.1 · 137,399–138,192 bp · +
psbB · NC_067740.1 · 71,296–72,822 bp · +
psbT · NC_067740.1 · 73,000–73,107 bp · +
psbH · NC_067740.1 · 73,405–73,626 bp · +
petB · NC_067740.1 · 73,760–75,108 bp · +
petD · NC_067740.1 · 75,302–76,499 bp · +
ycf2 · NC_067740.1 · 84,992–91,825 bp · +
ycf15 · NC_067740.1 · 91,908–92,156 bp · +
trnV-GAC · NC_067740.1 · 98,481–98,552 bp · +
rrn16 · NC_067740.1 · 98,779–100,269 bp · +
trnI-GAU · NC_067740.1 · 100,568–101,580 bp · +
trnA-UGC · NC_067740.1 · 101,645–102,521 bp · +
rrn23 · NC_067740.1 · 102,687–105,495 bp · +
rrn4.5 · NC_067740.1 · 105,596–105,698 bp · +
rrn5 · NC_067740.1 · 105,954–106,074 bp · +
trnR-ACG · NC_067740.1 · 106,318–106,391 bp · +
ycf1 · NC_067740.1 · 107,156–108,322 bp · +
rpl32 · NC_067740.1 · 110,964–111,134 bp · +
trnL-UAG · NC_067740.1 · 111,847–111,926 bp · +
ccsA · NC_067740.1 · 111,971–112,996 bp · +
trnN-GUU · NC_067740.1 · 127,316–127,387 bp · +
rps7 · NC_067740.1 · 138,246–138,713 bp · +
ndhB · NC_067740.1 · 139,042–141,195 bp · +
trnL-CAA · NC_067740.1 · 141,756–141,836 bp · +
trnI-CAU · NC_067740.1 · 149,350–149,423 bp · +
rpl23 · NC_067740.1 · 149,589–149,870 bp · +
rpl2 · NC_067740.1 · 149,889–151,371 bp · +
rps19 · NC_067740.1 · 151,431–151,469 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Salvia castanea
ANNOTATED PLASTOME
NC_067740.1
151,469 bp · 134 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37867 75734 113602 151469 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2 rps19
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
135 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 6 79 74 Locate
psbA gene − 390 1448 1059 Locate
trnK-UUU gene − 1680 4272 2593 Locate
matK gene − 1979 3541 1563 Locate
rps16 gene − 4844 5955 1112 Locate
trnQ-UUG gene − 6921 6992 72 Locate
psbK gene + 7379 7558 180 Locate
psbI gene + 7955 8065 111 Locate
trnS-GCU gene − 8221 8308 88 Locate
trnG-UCC gene + 8995 9750 756 Locate
trnR-UCU gene + 9932 10003 72 Locate
atpA gene − 10110 11633 1524 Locate
atpF gene − 11731 12980 1250 Locate
atpH gene − 13246 13491 246 Locate
atpI gene − 14481 15224 744 Locate
rps2 gene − 15450 16160 711 Locate
rpoC2 gene − 16371 20558 4188 Locate
rpoC1 gene − 20716 23536 2821 Locate
rpoB gene − 23563 26775 3213 Locate
trnC-GCA gene + 27923 27993 71 Locate
petN gene + 28157 28246 90 Locate
psbM gene − 29246 29350 105 Locate
trnD-GUC gene − 29871 29944 74 Locate
trnY-GUA gene − 30055 30138 84 Locate
trnE-UUC gene − 30204 30276 73 Locate
trnT-GGU gene + 30815 30886 72 Locate
psbD gene + 32265 33326 1062 Locate
psbC gene + 33274 34695 1422 Locate
trnS-UGA gene − 34942 35034 93 Locate
psbZ gene + 35369 35557 189 Locate
trnG-GCC gene + 35829 35899 71 Locate
trnfM-CAU gene − 36075 36148 74 Locate
rps14 gene − 36293 36595 303 Locate
psaB gene − 36723 38927 2205 Locate
psaA gene − 38953 41205 2253 Locate
ycf3 gene − 41915 43852 1938 Locate
trnS-GGA gene + 44670 44756 87 Locate
rps4 gene − 45039 45644 606 Locate
trnT-UGU gene − 46008 46080 73 Locate
trnL-UAA gene + 46751 47290 540 Locate
trnF-GAA gene + 47589 47661 73 Locate
ndhJ gene − 48185 48661 477 Locate
ndhK gene − 48772 49449 678 Locate
ndhC gene − 49501 49863 363 Locate
trnV-UAC gene − 50812 51460 649 Locate
trnM-CAU gene + 51641 51713 73 Locate
atpE gene − 51924 52325 402 Locate
atpB gene − 52322 53818 1497 Locate
rbcL gene + 54582 56036 1455 Locate
accD gene + 56736 58223 1488 Locate
psaI gene + 58698 58808 111 Locate
ycf4 gene + 59256 59810 555 Locate
cemA gene + 60421 61110 690 Locate
petA gene + 61331 62293 963 Locate
psbJ gene − 63342 63464 123 Locate
psbL gene − 63594 63710 117 Locate
psbF gene − 63734 63853 120 Locate
psbE gene − 63868 64119 252 Locate
petL gene + 64926 65021 96 Locate
petG gene + 65200 65313 114 Locate
trnW-CCA gene − 65428 65501 74 Locate
trnP-UGG gene − 65680 65753 74 Locate
psaJ gene + 66005 66178 174 Locate
rpl33 gene + 66629 66829 201 Locate
rps18 gene + 66995 67300 306 Locate
rpl20 gene − 67521 67907 387 Locate
rps12 gene − 68700 68813 114 Locate
clpP gene − 68937 70847 1911 Locate
psbB gene + 71296 72822 1527 Locate
psbT gene + 73000 73107 108 Locate
psbN gene − 73168 73299 132 Locate
psbH gene + 73405 73626 222 Locate
petB gene + 73760 75108 1349 Locate
petD gene + 75302 76499 1198 Locate
rpoA gene − 76676 77683 1008 Locate
rps11 gene − 77755 78171 417 Locate
rpl36 gene − 78281 78394 114 Locate
infA gene − 78490 78723 234 Locate
rps8 gene − 78850 79254 405 Locate
rpl14 gene − 79442 79810 369 Locate
rpl16 gene − 79942 81224 1283 Locate
rps3 gene − 81360 82022 663 Locate
rpl22 gene − 82007 82474 468 Locate
rps19 gene − 82544 82822 279 Locate
rpl2 gene − 82882 84364 1483 Locate
rpl23 gene − 84383 84664 282 Locate
trnI-CAU gene − 84830 84903 74 Locate
ycf2 gene + 84992 91825 6834 Locate
ycf15 gene + 91908 92156 249 Locate
trnL-CAA gene − 92417 92497 81 Locate
ndhB gene − 93058 95211 2154 Locate
rps7 gene − 95540 96007 468 Locate
rps12 gene − 96061 96854 794 Locate
trnV-GAC gene + 98481 98552 72 Locate
rrn16 gene + 98779 100269 1491 Locate
trnI-GAU gene + 100568 101580 1013 Locate
trnA-UGC gene + 101645 102521 877 Locate
rrn23 gene + 102687 105495 2809 Locate
rrn4.5 gene + 105596 105698 103 Locate
rrn5 gene + 105954 106074 121 Locate
trnR-ACG gene + 106318 106391 74 Locate
trnN-GUU gene − 106866 106937 72 Locate
ycf1 gene + 107156 108322 1167 Locate
ndhF gene − 108291 110531 2241 Locate
rpl32 gene + 110964 111134 171 Locate
trnL-UAG gene + 111847 111926 80 Locate
ccsA gene + 111971 112996 1026 Locate
ndhD gene − 113229 114770 1542 Locate
psaC gene − 114867 115112 246 Locate
ndhE gene − 115363 115665 303 Locate
ndhG gene − 115883 116413 531 Locate
ndhI gene − 116794 117300 507 Locate
ndhA gene − 117381 119475 2095 Locate
ndhH gene − 119477 120712 1236 Locate
rps15 gene − 120796 121035 240 Locate
ycf1 gene − 121452 127097 5646 Locate
trnN-GUU gene + 127316 127387 72 Locate
trnR-ACG gene − 127862 127935 74 Locate
rrn5 gene − 128179 128299 121 Locate
rrn4.5 gene − 128555 128657 103 Locate
rrn23 gene − 128758 131566 2809 Locate
trnA-UGC gene − 131732 132608 877 Locate
trnI-GAU gene − 132673 133685 1013 Locate
rrn16 gene − 133984 135474 1491 Locate
trnV-GAC gene − 135701 135772 72 Locate
rps12 gene + 137399 138192 794 Locate
rps7 gene + 138246 138713 468 Locate
ndhB gene + 139042 141195 2154 Locate
trnL-CAA gene + 141756 141836 81 Locate
ycf15 gene − 142097 142345 249 Locate
ycf2 gene − 142428 149261 6834 Locate
trnI-CAU gene + 149350 149423 74 Locate
rpl23 gene + 149589 149870 282 Locate
rpl2 gene + 149889 151371 1483 Locate
rps19 gene + 151431 151469 39 Locate
Status Available
Accession NC_067740.1
Length 151,469 bp
GC content 38.0%
Annotated genes 134
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 27 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources