Salvia daiguii chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · NC_059718.1 · 11–84 bp · −
psbA · NC_059718.1 · 392–1,450 bp · −
trnK-UUU · NC_059718.1 · 1,674–4,267 bp · −
matK · NC_059718.1 · 1,973–3,535 bp · −
rps16 · NC_059718.1 · 4,835–5,945 bp · −
trnQ-UUG · NC_059718.1 · 6,926–6,997 bp · −
trnS-GCU · NC_059718.1 · 8,240–8,327 bp · −
atpA · NC_059718.1 · 10,130–11,653 bp · −
atpF · NC_059718.1 · 11,748–12,992 bp · −
atpH · NC_059718.1 · 13,266–13,511 bp · −
atpI · NC_059718.1 · 14,483–15,226 bp · −
rps2 · NC_059718.1 · 15,452–16,162 bp · −
rpoC2 · NC_059718.1 · 16,371–20,549 bp · −
rpoC1 · NC_059718.1 · 20,707–23,541 bp · −
rpoB · NC_059718.1 · 23,547–26,735 bp · −
psbM · NC_059718.1 · 29,202–29,306 bp · −
trnD-GUC · NC_059718.1 · 29,828–29,901 bp · −
trnY-GUA · NC_059718.1 · 30,012–30,095 bp · −
trnE-UUC · NC_059718.1 · 30,167–30,239 bp · −
trnS-UGA · NC_059718.1 · 34,908–35,000 bp · −
trnfM-CAU · NC_059718.1 · 36,041–36,114 bp · −
rps14 · NC_059718.1 · 36,259–36,561 bp · −
psaB · NC_059718.1 · 36,684–38,888 bp · −
psaA · NC_059718.1 · 38,914–41,166 bp · −
ycf3 · NC_059718.1 · 41,943–43,887 bp · −
rps4 · NC_059718.1 · 45,067–45,672 bp · −
trnT-UGU · NC_059718.1 · 46,041–46,113 bp · −
ndhJ · NC_059718.1 · 48,239–48,715 bp · −
ndhK · NC_059718.1 · 48,826–49,503 bp · −
ndhC · NC_059718.1 · 49,554–49,916 bp · −
trnV-UAC · NC_059718.1 · 50,866–51,514 bp · −
atpE · NC_059718.1 · 51,971–52,372 bp · −
atpB · NC_059718.1 · 52,369–53,865 bp · −
psbJ · NC_059718.1 · 63,302–63,424 bp · −
psbL · NC_059718.1 · 63,554–63,670 bp · −
psbF · NC_059718.1 · 63,694–63,813 bp · −
psbE · NC_059718.1 · 63,828–64,079 bp · −
trnW-CCA · NC_059718.1 · 65,377–65,450 bp · −
trnP-UGG · NC_059718.1 · 65,621–65,694 bp · −
rpl20 · NC_059718.1 · 67,480–67,866 bp · −
rps12 · NC_059718.1 · 68,678–68,791 bp · −
rps12 · NC_059718.1 · 96,041–96,824 bp · −
clpP · NC_059718.1 · 68,915–70,823 bp · −
psbN · NC_059718.1 · 73,144–73,275 bp · −
rpoA · NC_059718.1 · 76,645–77,652 bp · −
rps11 · NC_059718.1 · 77,724–78,140 bp · −
rpl36 · NC_059718.1 · 78,250–78,363 bp · −
infA · NC_059718.1 · 78,459–78,692 bp · −
rps8 · NC_059718.1 · 78,819–79,223 bp · −
rpl14 · NC_059718.1 · 79,413–79,781 bp · −
rpl16 · NC_059718.1 · 79,913–81,197 bp · −
rps3 · NC_059718.1 · 81,333–81,995 bp · −
rpl22 · NC_059718.1 · 81,980–82,447 bp · −
rps19 · NC_059718.1 · 82,517–82,792 bp · −
rpl2 · NC_059718.1 · 82,855–84,337 bp · −
rpl23 · NC_059718.1 · 84,356–84,637 bp · −
trnI-CAU · NC_059718.1 · 84,803–84,876 bp · −
trnL-CAA · NC_059718.1 · 92,398–92,478 bp · −
ndhB · NC_059718.1 · 93,038–95,191 bp · −
rps7 · NC_059718.1 · 95,520–95,987 bp · −
trnN-GUU · NC_059718.1 · 106,849–106,920 bp · −
ndhF · NC_059718.1 · 108,274–110,490 bp · −
ndhD · NC_059718.1 · 113,195–114,736 bp · −
psaC · NC_059718.1 · 114,846–115,091 bp · −
ndhE · NC_059718.1 · 115,342–115,647 bp · −
ndhG · NC_059718.1 · 115,863–116,393 bp · −
ndhI · NC_059718.1 · 116,768–117,274 bp · −
ndhA · NC_059718.1 · 117,355–119,446 bp · −
ndhH · NC_059718.1 · 119,448–120,629 bp · −
rps15 · NC_059718.1 · 120,729–121,001 bp · −
ycf1 · NC_059718.1 · 121,427–126,937 bp · −
trnR-ACG · NC_059718.1 · 127,858–127,931 bp · −
rrn5 · NC_059718.1 · 128,175–128,295 bp · −
rrn4.5 · NC_059718.1 · 128,520–128,622 bp · −
rrn23 · NC_059718.1 · 128,721–131,531 bp · −
trnA-UGC · NC_059718.1 · 131,697–132,573 bp · −
trnI-GAU · NC_059718.1 · 132,638–133,649 bp · −
rrn16 · NC_059718.1 · 133,948–135,438 bp · −
trnV-GAC · NC_059718.1 · 135,665–135,736 bp · −
ycf15 · NC_059718.1 · 142,050–142,298 bp · −
ycf2 · NC_059718.1 · 142,389–149,222 bp · −
psbK · NC_059718.1 · 7,390–7,569 bp · +
psbI · NC_059718.1 · 7,915–8,076 bp · +
trnG-UCC · NC_059718.1 · 9,012–9,764 bp · +
trnR-UCU · NC_059718.1 · 9,947–10,018 bp · +
trnC-GCA · NC_059718.1 · 27,903–27,971 bp · +
petN · NC_059718.1 · 28,136–28,225 bp · +
trnT-GGU · NC_059718.1 · 30,781–30,852 bp · +
psbD · NC_059718.1 · 32,232–33,293 bp · +
psbC · NC_059718.1 · 33,241–34,662 bp · +
psbZ · NC_059718.1 · 35,335–35,523 bp · +
trnG-GCC · NC_059718.1 · 35,795–35,864 bp · +
trnS-GGA · NC_059718.1 · 44,704–44,790 bp · +
trnL-UAA · NC_059718.1 · 46,789–47,329 bp · +
trnF-GAA · NC_059718.1 · 47,634–47,706 bp · +
trnM-CAU · NC_059718.1 · 51,703–51,775 bp · +
rbcL · NC_059718.1 · 54,650–56,095 bp · +
accD · NC_059718.1 · 56,767–58,254 bp · +
psaI · NC_059718.1 · 58,717–58,827 bp · +
ycf4 · NC_059718.1 · 59,281–59,835 bp · +
cemA · NC_059718.1 · 60,383–61,072 bp · +
petA · NC_059718.1 · 61,278–62,240 bp · +
petL · NC_059718.1 · 64,886–64,981 bp · +
petG · NC_059718.1 · 65,149–65,262 bp · +
psaJ · NC_059718.1 · 65,985–66,119 bp · +
rpl33 · NC_059718.1 · 66,575–66,775 bp · +
rps18 · NC_059718.1 · 66,905–67,246 bp · +
rps12 · NC_059718.1 · 137,363–138,146 bp · +
psbB · NC_059718.1 · 71,272–72,798 bp · +
psbT · NC_059718.1 · 72,976–73,083 bp · +
psbH · NC_059718.1 · 73,381–73,602 bp · +
petB · NC_059718.1 · 73,728–75,078 bp · +
petD · NC_059718.1 · 75,272–76,468 bp · +
ycf2 · NC_059718.1 · 84,965–91,798 bp · +
ycf15 · NC_059718.1 · 91,889–92,137 bp · +
trnV-GAC · NC_059718.1 · 98,451–98,522 bp · +
rrn16 · NC_059718.1 · 98,749–100,239 bp · +
trnI-GAU · NC_059718.1 · 100,538–101,549 bp · +
trnA-UGC · NC_059718.1 · 101,614–102,490 bp · +
rrn23 · NC_059718.1 · 102,656–105,466 bp · +
rrn4.5 · NC_059718.1 · 105,565–105,667 bp · +
rrn5 · NC_059718.1 · 105,892–106,012 bp · +
trnR-ACG · NC_059718.1 · 106,256–106,329 bp · +
ycf1 · NC_059718.1 · 107,250–108,407 bp · +
rpl32 · NC_059718.1 · 110,941–111,126 bp · +
trnL-UAG · NC_059718.1 · 111,816–111,900 bp · +
ccsA · NC_059718.1 · 111,988–112,965 bp · +
trnN-GUU · NC_059718.1 · 127,267–127,338 bp · +
rps7 · NC_059718.1 · 138,200–138,667 bp · +
ndhB · NC_059718.1 · 138,996–141,149 bp · +
trnL-CAA · NC_059718.1 · 141,709–141,789 bp · +
trnI-CAU · NC_059718.1 · 149,311–149,384 bp · +
rpl23 · NC_059718.1 · 149,550–149,831 bp · +
rpl2 · NC_059718.1 · 149,850–151,332 bp · +
rps19 · NC_059718.1 · 151,392–151,430 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Salvia daiguii
ANNOTATED PLASTOME
NC_059718.1
151,434 bp · 134 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37858 75717 113576 151434 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2 rps19
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
135 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 11 84 74 Locate
psbA gene − 392 1450 1059 Locate
trnK-UUU gene − 1674 4267 2594 Locate
matK gene − 1973 3535 1563 Locate
rps16 gene − 4835 5945 1111 Locate
trnQ-UUG gene − 6926 6997 72 Locate
psbK gene + 7390 7569 180 Locate
psbI gene + 7915 8076 162 Locate
trnS-GCU gene − 8240 8327 88 Locate
trnG-UCC gene + 9012 9764 753 Locate
trnR-UCU gene + 9947 10018 72 Locate
atpA gene − 10130 11653 1524 Locate
atpF gene − 11748 12992 1245 Locate
atpH gene − 13266 13511 246 Locate
atpI gene − 14483 15226 744 Locate
rps2 gene − 15452 16162 711 Locate
rpoC2 gene − 16371 20549 4179 Locate
rpoC1 gene − 20707 23541 2835 Locate
rpoB gene − 23547 26735 3189 Locate
trnC-GCA gene + 27903 27971 69 Locate
petN gene + 28136 28225 90 Locate
psbM gene − 29202 29306 105 Locate
trnD-GUC gene − 29828 29901 74 Locate
trnY-GUA gene − 30012 30095 84 Locate
trnE-UUC gene − 30167 30239 73 Locate
trnT-GGU gene + 30781 30852 72 Locate
psbD gene + 32232 33293 1062 Locate
psbC gene + 33241 34662 1422 Locate
trnS-UGA gene − 34908 35000 93 Locate
psbZ gene + 35335 35523 189 Locate
trnG-GCC gene + 35795 35864 70 Locate
trnfM-CAU gene − 36041 36114 74 Locate
rps14 gene − 36259 36561 303 Locate
psaB gene − 36684 38888 2205 Locate
psaA gene − 38914 41166 2253 Locate
ycf3 gene − 41943 43887 1945 Locate
trnS-GGA gene + 44704 44790 87 Locate
rps4 gene − 45067 45672 606 Locate
trnT-UGU gene − 46041 46113 73 Locate
trnL-UAA gene + 46789 47329 541 Locate
trnF-GAA gene + 47634 47706 73 Locate
ndhJ gene − 48239 48715 477 Locate
ndhK gene − 48826 49503 678 Locate
ndhC gene − 49554 49916 363 Locate
trnV-UAC gene − 50866 51514 649 Locate
trnM-CAU gene + 51703 51775 73 Locate
atpE gene − 51971 52372 402 Locate
atpB gene − 52369 53865 1497 Locate
rbcL gene + 54650 56095 1446 Locate
accD gene + 56767 58254 1488 Locate
psaI gene + 58717 58827 111 Locate
ycf4 gene + 59281 59835 555 Locate
cemA gene + 60383 61072 690 Locate
petA gene + 61278 62240 963 Locate
psbJ gene − 63302 63424 123 Locate
psbL gene − 63554 63670 117 Locate
psbF gene − 63694 63813 120 Locate
psbE gene − 63828 64079 252 Locate
petL gene + 64886 64981 96 Locate
petG gene + 65149 65262 114 Locate
trnW-CCA gene − 65377 65450 74 Locate
trnP-UGG gene − 65621 65694 74 Locate
psaJ gene + 65985 66119 135 Locate
rpl33 gene + 66575 66775 201 Locate
rps18 gene + 66905 67246 342 Locate
rpl20 gene − 67480 67866 387 Locate
rps12 gene − 68678 68791 114 Locate
clpP gene − 68915 70823 1909 Locate
psbB gene + 71272 72798 1527 Locate
psbT gene + 72976 73083 108 Locate
psbN gene − 73144 73275 132 Locate
psbH gene + 73381 73602 222 Locate
petB gene + 73728 75078 1351 Locate
petD gene + 75272 76468 1197 Locate
rpoA gene − 76645 77652 1008 Locate
rps11 gene − 77724 78140 417 Locate
rpl36 gene − 78250 78363 114 Locate
infA gene − 78459 78692 234 Locate
rps8 gene − 78819 79223 405 Locate
rpl14 gene − 79413 79781 369 Locate
rpl16 gene − 79913 81197 1285 Locate
rps3 gene − 81333 81995 663 Locate
rpl22 gene − 81980 82447 468 Locate
rps19 gene − 82517 82792 276 Locate
rpl2 gene − 82855 84337 1483 Locate
rpl23 gene − 84356 84637 282 Locate
trnI-CAU gene − 84803 84876 74 Locate
ycf2 gene + 84965 91798 6834 Locate
ycf15 gene + 91889 92137 249 Locate
trnL-CAA gene − 92398 92478 81 Locate
ndhB gene − 93038 95191 2154 Locate
rps7 gene − 95520 95987 468 Locate
rps12 gene − 96041 96824 784 Locate
trnV-GAC gene + 98451 98522 72 Locate
rrn16 gene + 98749 100239 1491 Locate
trnI-GAU gene + 100538 101549 1012 Locate
trnA-UGC gene + 101614 102490 877 Locate
rrn23 gene + 102656 105466 2811 Locate
rrn4.5 gene + 105565 105667 103 Locate
rrn5 gene + 105892 106012 121 Locate
trnR-ACG gene + 106256 106329 74 Locate
trnN-GUU gene − 106849 106920 72 Locate
ycf1 gene + 107250 108407 1158 Locate
ndhF gene − 108274 110490 2217 Locate
rpl32 gene + 110941 111126 186 Locate
trnL-UAG gene + 111816 111900 85 Locate
ccsA gene + 111988 112965 978 Locate
ndhD gene − 113195 114736 1542 Locate
psaC gene − 114846 115091 246 Locate
ndhE gene − 115342 115647 306 Locate
ndhG gene − 115863 116393 531 Locate
ndhI gene − 116768 117274 507 Locate
ndhA gene − 117355 119446 2092 Locate
ndhH gene − 119448 120629 1182 Locate
rps15 gene − 120729 121001 273 Locate
ycf1 gene − 121427 126937 5511 Locate
trnN-GUU gene + 127267 127338 72 Locate
trnR-ACG gene − 127858 127931 74 Locate
rrn5 gene − 128175 128295 121 Locate
rrn4.5 gene − 128520 128622 103 Locate
rrn23 gene − 128721 131531 2811 Locate
trnA-UGC gene − 131697 132573 877 Locate
trnI-GAU gene − 132638 133649 1012 Locate
rrn16 gene − 133948 135438 1491 Locate
trnV-GAC gene − 135665 135736 72 Locate
rps12 gene + 137363 138146 784 Locate
rps7 gene + 138200 138667 468 Locate
ndhB gene + 138996 141149 2154 Locate
trnL-CAA gene + 141709 141789 81 Locate
ycf15 gene − 142050 142298 249 Locate
ycf2 gene − 142389 149222 6834 Locate
trnI-CAU gene + 149311 149384 74 Locate
rpl23 gene + 149550 149831 282 Locate
rpl2 gene + 149850 151332 1483 Locate
rps19 gene + 151392 151430 39 Locate
Status Available
Accession NC_059718.1
Length 151,434 bp
GC content 38.0%
Annotated genes 134
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 27 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources