Salvia deserta chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
LSC
IR
SSC
IR
trnH-GUG · NC_084045.1 · 11–84 bp · −
psbA · NC_084045.1 · 389–1,447 bp · −
trnK-UUU · NC_084045.1 · 1,679–4,259 bp · −
matK · NC_084045.1 · 1,991–3,520 bp · −
rps16 · NC_084045.1 · 4,831–5,930 bp · −
trnQ-UUG · NC_084045.1 · 6,506–6,577 bp · −
trnS-GCU · NC_084045.1 · 7,796–7,883 bp · −
atpA · NC_084045.1 · 9,718–11,241 bp · −
atpF · NC_084045.1 · 11,340–12,601 bp · −
atpH · NC_084045.1 · 12,873–13,118 bp · −
atpI · NC_084045.1 · 14,040–14,783 bp · −
rps2 · NC_084045.1 · 15,008–15,718 bp · −
rpoC2 · NC_084045.1 · 15,943–20,121 bp · −
rpoC1 · NC_084045.1 · 20,286–23,111 bp · −
rpoB · NC_084045.1 · 23,138–26,350 bp · −
psbM · NC_084045.1 · 28,817–28,921 bp · −
trnD-GUC · NC_084045.1 · 29,431–29,504 bp · −
trnY-GUA · NC_084045.1 · 29,615–29,698 bp · −
trnE-UUC · NC_084045.1 · 29,769–29,841 bp · −
trnS-UGA · NC_084045.1 · 34,499–34,583 bp · −
trnfM-CAU · NC_084045.1 · 35,638–35,711 bp · −
rps14 · NC_084045.1 · 35,856–36,158 bp · −
psaB · NC_084045.1 · 36,280–38,484 bp · −
psaA · NC_084045.1 · 38,510–40,762 bp · −
ycf3 · NC_084045.1 · 41,526–43,484 bp · −
rps4 · NC_084045.1 · 44,674–45,279 bp · −
trnT-UGU · NC_084045.1 · 45,640–45,712 bp · −
ndhJ · NC_084045.1 · 48,002–48,478 bp · −
ndhK · NC_084045.1 · 48,595–49,272 bp · −
ndhC · NC_084045.1 · 49,324–49,686 bp · −
trnV-UAC · NC_084045.1 · 50,662–51,312 bp · −
atpE · NC_084045.1 · 51,771–52,172 bp · −
atpB · NC_084045.1 · 52,169–53,665 bp · −
psbJ · NC_084045.1 · 63,158–63,280 bp · −
psbL · NC_084045.1 · 63,410–63,526 bp · −
psbF · NC_084045.1 · 63,550–63,669 bp · −
psbE · NC_084045.1 · 63,684–63,935 bp · −
trnW-CCA · NC_084045.1 · 65,327–65,400 bp · −
trnP-UGG · NC_084045.1 · 65,575–65,648 bp · −
rpl20 · NC_084045.1 · 67,390–67,776 bp · −
rps12 · NC_084045.1 · 68,569–68,682 bp · −
rps12 · NC_084045.1 · 95,910–96,703 bp · −
clpP · NC_084045.1 · 68,805–70,701 bp · −
psbN · NC_084045.1 · 73,039–73,170 bp · −
rpoA · NC_084045.1 · 76,557–77,564 bp · −
rps11 · NC_084045.1 · 77,635–78,051 bp · −
rpl36 · NC_084045.1 · 78,161–78,274 bp · −
infA · NC_084045.1 · 78,370–78,603 bp · −
rps8 · NC_084045.1 · 78,725–79,129 bp · −
rpl14 · NC_084045.1 · 79,300–79,668 bp · −
rpl16 · NC_084045.1 · 79,798–81,067 bp · −
rps3 · NC_084045.1 · 81,210–81,872 bp · −
rpl22 · NC_084045.1 · 81,857–82,324 bp · −
rps19 · NC_084045.1 · 82,388–82,666 bp · −
rpl2 · NC_084045.1 · 82,726–84,213 bp · −
rpl23 · NC_084045.1 · 84,238–84,519 bp · −
trnI-CAU · NC_084045.1 · 84,685–84,758 bp · −
trnL-CAA · NC_084045.1 · 92,275–92,355 bp · −
ndhB · NC_084045.1 · 92,907–95,060 bp · −
rps7 · NC_084045.1 · 95,389–95,856 bp · −
trnN-GUU · NC_084045.1 · 106,730–106,801 bp · −
ndhF · NC_084045.1 · 108,149–110,416 bp · −
ndhD · NC_084045.1 · 113,099–114,640 bp · −
psaC · NC_084045.1 · 114,734–114,979 bp · −
ndhE · NC_084045.1 · 115,230–115,532 bp · −
ndhG · NC_084045.1 · 115,756–116,286 bp · −
ndhI · NC_084045.1 · 116,660–117,166 bp · −
ndhA · NC_084045.1 · 117,247–119,343 bp · −
ndhH · NC_084045.1 · 119,345–120,580 bp · −
rps15 · NC_084045.1 · 120,626–120,898 bp · −
ycf1 · NC_084045.1 · 121,288–126,930 bp · −
trnR-ACG · NC_084045.1 · 127,739–127,812 bp · −
rrn5 · NC_084045.1 · 128,056–128,176 bp · −
rrn4.5 · NC_084045.1 · 128,420–128,522 bp · −
rrn23 · NC_084045.1 · 128,623–131,433 bp · −
trnA-UGC · NC_084045.1 · 131,594–132,471 bp · −
trnI-GAU · NC_084045.1 · 132,536–133,555 bp · −
rrn16 · NC_084045.1 · 133,854–135,344 bp · −
trnV-GAC · NC_084045.1 · 135,576–135,647 bp · −
ycf15 · NC_084045.1 · 141,931–142,179 bp · −
ycf2 · NC_084045.1 · 142,270–149,103 bp · −
psbK · NC_084045.1 · 6,963–7,142 bp · +
psbI · NC_084045.1 · 7,548–7,658 bp · +
trnG-UCC · NC_084045.1 · 8,592–9,348 bp · +
trnR-UCU · NC_084045.1 · 9,541–9,612 bp · +
trnC-GCA · NC_084045.1 · 27,491–27,561 bp · +
petN · NC_084045.1 · 27,725–27,814 bp · +
trnT-GGU · NC_084045.1 · 30,411–30,482 bp · +
psbD · NC_084045.1 · 31,820–32,881 bp · +
psbC · NC_084045.1 · 32,829–34,250 bp · +
psbZ · NC_084045.1 · 34,913–35,101 bp · +
trnG-GCC · NC_084045.1 · 35,386–35,456 bp · +
trnS-GGA · NC_084045.1 · 44,325–44,411 bp · +
trnL-UAA · NC_084045.1 · 46,417–46,996 bp · +
trnF-GAA · NC_084045.1 · 47,280–47,352 bp · +
trnM-CAU · NC_084045.1 · 51,493–51,565 bp · +
rbcL · NC_084045.1 · 54,444–55,910 bp · +
accD · NC_084045.1 · 56,589–58,061 bp · +
psaI · NC_084045.1 · 58,529–58,639 bp · +
ycf4 · NC_084045.1 · 59,085–59,639 bp · +
cemA · NC_084045.1 · 60,289–60,978 bp · +
petA · NC_084045.1 · 61,187–62,149 bp · +
petL · NC_084045.1 · 64,824–64,919 bp · +
petG · NC_084045.1 · 65,098–65,211 bp · +
psaJ · NC_084045.1 · 65,918–66,052 bp · +
rpl33 · NC_084045.1 · 66,481–66,681 bp · +
rps18 · NC_084045.1 · 66,852–67,157 bp · +
rps12 · NC_084045.1 · 137,247–138,040 bp · +
psbB · NC_084045.1 · 71,161–72,687 bp · +
psbT · NC_084045.1 · 72,871–72,978 bp · +
psbH · NC_084045.1 · 73,276–73,497 bp · +
petB · NC_084045.1 · 73,623–75,002 bp · +
petD · NC_084045.1 · 75,190–76,380 bp · +
ycf2 · NC_084045.1 · 84,847–91,680 bp · +
ycf15 · NC_084045.1 · 91,771–92,019 bp · +
trnV-GAC · NC_084045.1 · 98,303–98,374 bp · +
rrn16 · NC_084045.1 · 98,606–100,096 bp · +
trnI-GAU · NC_084045.1 · 100,395–101,414 bp · +
trnA-UGC · NC_084045.1 · 101,479–102,356 bp · +
rrn23 · NC_084045.1 · 102,517–105,327 bp · +
rrn4.5 · NC_084045.1 · 105,428–105,530 bp · +
rrn5 · NC_084045.1 · 105,774–105,894 bp · +
trnR-ACG · NC_084045.1 · 106,138–106,211 bp · +
ycf1 · NC_084045.1 · 107,020–108,184 bp · +
rpl32 · NC_084045.1 · 110,811–111,008 bp · +
trnL-UAG · NC_084045.1 · 111,731–111,810 bp · +
ccsA · NC_084045.1 · 111,909–112,880 bp · +
trnN-GUU · NC_084045.1 · 127,149–127,220 bp · +
rps7 · NC_084045.1 · 138,094–138,561 bp · +
ndhB · NC_084045.1 · 138,890–141,043 bp · +
trnL-CAA · NC_084045.1 · 141,595–141,675 bp · +
trnI-CAU · NC_084045.1 · 149,192–149,265 bp · +
rpl23 · NC_084045.1 · 149,431–149,712 bp · +
rpl2 · NC_084045.1 · 149,737–151,224 bp · +
rps19 · NC_084045.1 · 151,284–151,325 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Salvia deserta
ANNOTATED PLASTOME
NC_084045.1
151,326 bp · 134 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37832 75663 113494 151326 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2 rps19
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
135 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 11 84 74 Locate
psbA gene − 389 1447 1059 Locate
trnK-UUU gene − 1679 4259 2581 Locate
matK gene − 1991 3520 1530 Locate
rps16 gene − 4831 5930 1100 Locate
trnQ-UUG gene − 6506 6577 72 Locate
psbK gene + 6963 7142 180 Locate
psbI gene + 7548 7658 111 Locate
trnS-GCU gene − 7796 7883 88 Locate
trnG-UCC gene + 8592 9348 757 Locate
trnR-UCU gene + 9541 9612 72 Locate
atpA gene − 9718 11241 1524 Locate
atpF gene − 11340 12601 1262 Locate
atpH gene − 12873 13118 246 Locate
atpI gene − 14040 14783 744 Locate
rps2 gene − 15008 15718 711 Locate
rpoC2 gene − 15943 20121 4179 Locate
rpoC1 gene − 20286 23111 2826 Locate
rpoB gene − 23138 26350 3213 Locate
trnC-GCA gene + 27491 27561 71 Locate
petN gene + 27725 27814 90 Locate
psbM gene − 28817 28921 105 Locate
trnD-GUC gene − 29431 29504 74 Locate
trnY-GUA gene − 29615 29698 84 Locate
trnE-UUC gene − 29769 29841 73 Locate
trnT-GGU gene + 30411 30482 72 Locate
psbD gene + 31820 32881 1062 Locate
psbC gene + 32829 34250 1422 Locate
trnS-UGA gene − 34499 34583 85 Locate
psbZ gene + 34913 35101 189 Locate
trnG-GCC gene + 35386 35456 71 Locate
trnfM-CAU gene − 35638 35711 74 Locate
rps14 gene − 35856 36158 303 Locate
psaB gene − 36280 38484 2205 Locate
psaA gene − 38510 40762 2253 Locate
ycf3 gene − 41526 43484 1959 Locate
trnS-GGA gene + 44325 44411 87 Locate
rps4 gene − 44674 45279 606 Locate
trnT-UGU gene − 45640 45712 73 Locate
trnL-UAA gene + 46417 46996 580 Locate
trnF-GAA gene + 47280 47352 73 Locate
ndhJ gene − 48002 48478 477 Locate
ndhK gene − 48595 49272 678 Locate
ndhC gene − 49324 49686 363 Locate
trnV-UAC gene − 50662 51312 651 Locate
trnM-CAU gene + 51493 51565 73 Locate
atpE gene − 51771 52172 402 Locate
atpB gene − 52169 53665 1497 Locate
rbcL gene + 54444 55910 1467 Locate
accD gene + 56589 58061 1473 Locate
psaI gene + 58529 58639 111 Locate
ycf4 gene + 59085 59639 555 Locate
cemA gene + 60289 60978 690 Locate
petA gene + 61187 62149 963 Locate
psbJ gene − 63158 63280 123 Locate
psbL gene − 63410 63526 117 Locate
psbF gene − 63550 63669 120 Locate
psbE gene − 63684 63935 252 Locate
petL gene + 64824 64919 96 Locate
petG gene + 65098 65211 114 Locate
trnW-CCA gene − 65327 65400 74 Locate
trnP-UGG gene − 65575 65648 74 Locate
psaJ gene + 65918 66052 135 Locate
rpl33 gene + 66481 66681 201 Locate
rps18 gene + 66852 67157 306 Locate
rpl20 gene − 67390 67776 387 Locate
rps12 gene − 68569 68682 114 Locate
clpP gene − 68805 70701 1897 Locate
psbB gene + 71161 72687 1527 Locate
psbT gene + 72871 72978 108 Locate
psbN gene − 73039 73170 132 Locate
psbH gene + 73276 73497 222 Locate
petB gene + 73623 75002 1380 Locate
petD gene + 75190 76380 1191 Locate
rpoA gene − 76557 77564 1008 Locate
rps11 gene − 77635 78051 417 Locate
rpl36 gene − 78161 78274 114 Locate
infA gene − 78370 78603 234 Locate
rps8 gene − 78725 79129 405 Locate
rpl14 gene − 79300 79668 369 Locate
rpl16 gene − 79798 81067 1270 Locate
rps3 gene − 81210 81872 663 Locate
rpl22 gene − 81857 82324 468 Locate
rps19 gene − 82388 82666 279 Locate
rpl2 gene − 82726 84213 1488 Locate
rpl23 gene − 84238 84519 282 Locate
trnI-CAU gene − 84685 84758 74 Locate
ycf2 gene + 84847 91680 6834 Locate
ycf15 gene + 91771 92019 249 Locate
trnL-CAA gene − 92275 92355 81 Locate
ndhB gene − 92907 95060 2154 Locate
rps7 gene − 95389 95856 468 Locate
rps12 gene − 95910 96703 794 Locate
trnV-GAC gene + 98303 98374 72 Locate
rrn16 gene + 98606 100096 1491 Locate
trnI-GAU gene + 100395 101414 1020 Locate
trnA-UGC gene + 101479 102356 878 Locate
rrn23 gene + 102517 105327 2811 Locate
rrn4.5 gene + 105428 105530 103 Locate
rrn5 gene + 105774 105894 121 Locate
trnR-ACG gene + 106138 106211 74 Locate
trnN-GUU gene − 106730 106801 72 Locate
ycf1 gene + 107020 108184 1165 Locate
ndhF gene − 108149 110416 2268 Locate
rpl32 gene + 110811 111008 198 Locate
trnL-UAG gene + 111731 111810 80 Locate
ccsA gene + 111909 112880 972 Locate
ndhD gene − 113099 114640 1542 Locate
psaC gene − 114734 114979 246 Locate
ndhE gene − 115230 115532 303 Locate
ndhG gene − 115756 116286 531 Locate
ndhI gene − 116660 117166 507 Locate
ndhA gene − 117247 119343 2097 Locate
ndhH gene − 119345 120580 1236 Locate
rps15 gene − 120626 120898 273 Locate
ycf1 gene − 121288 126930 5643 Locate
trnN-GUU gene + 127149 127220 72 Locate
trnR-ACG gene − 127739 127812 74 Locate
rrn5 gene − 128056 128176 121 Locate
rrn4.5 gene − 128420 128522 103 Locate
rrn23 gene − 128623 131433 2811 Locate
trnA-UGC gene − 131594 132471 878 Locate
trnI-GAU gene − 132536 133555 1020 Locate
rrn16 gene − 133854 135344 1491 Locate
trnV-GAC gene − 135576 135647 72 Locate
rps12 gene + 137247 138040 794 Locate
rps7 gene + 138094 138561 468 Locate
ndhB gene + 138890 141043 2154 Locate
trnL-CAA gene + 141595 141675 81 Locate
ycf15 gene − 141931 142179 249 Locate
ycf2 gene − 142270 149103 6834 Locate
trnI-CAU gene + 149192 149265 74 Locate
rpl23 gene + 149431 149712 282 Locate
rpl2 gene + 149737 151224 1488 Locate
rps19 gene + 151284 151325 42 Locate
Status Available
Accession NC_084045.1
Length 151,326 bp
GC content 38.0%
Annotated genes 134
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 27 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources