Salvia digitaloides chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
LSC
IR
SSC
IR
trnH-GUG · NC_050895.1 · 12–85 bp · −
psbA · NC_050895.1 · 395–1,453 bp · −
trnK-UUU · NC_050895.1 · 1,685–4,280 bp · −
matK · NC_050895.1 · 2,019–3,548 bp · −
rps16 · NC_050895.1 · 4,855–5,974 bp · −
trnQ-UUG · NC_050895.1 · 6,950–7,021 bp · −
trnS-GCU · NC_050895.1 · 8,241–8,328 bp · −
atpA · NC_050895.1 · 10,140–11,663 bp · −
atpF · NC_050895.1 · 11,769–13,011 bp · −
atpH · NC_050895.1 · 13,278–13,523 bp · −
atpI · NC_050895.1 · 14,525–15,268 bp · −
rps2 · NC_050895.1 · 15,493–16,203 bp · −
rpoC2 · NC_050895.1 · 16,403–20,581 bp · −
rpoC1 · NC_050895.1 · 20,740–23,553 bp · −
rpoB · NC_050895.1 · 23,580–26,792 bp · −
psbM · NC_050895.1 · 28,984–29,088 bp · −
trnD-GUC · NC_050895.1 · 29,610–29,683 bp · −
trnY-GUA · NC_050895.1 · 29,794–29,877 bp · −
trnE-UUC · NC_050895.1 · 29,943–30,015 bp · −
trnS-UGA · NC_050895.1 · 34,680–34,772 bp · −
trnfM-CAU · NC_050895.1 · 35,811–35,884 bp · −
rps14 · NC_050895.1 · 36,029–36,331 bp · −
psaB · NC_050895.1 · 36,454–38,658 bp · −
psaA · NC_050895.1 · 38,684–40,936 bp · −
ycf3 · NC_050895.1 · 41,726–43,686 bp · −
rps4 · NC_050895.1 · 44,868–45,473 bp · −
trnT-UGU · NC_050895.1 · 45,846–45,918 bp · −
ndhJ · NC_050895.1 · 48,045–48,521 bp · −
ndhK · NC_050895.1 · 48,632–49,309 bp · −
ndhC · NC_050895.1 · 49,361–49,723 bp · −
trnV-UAC · NC_050895.1 · 50,665–51,313 bp · −
atpE · NC_050895.1 · 51,777–52,178 bp · −
atpB · NC_050895.1 · 52,175–53,671 bp · −
psbJ · NC_050895.1 · 63,980–64,102 bp · −
psbL · NC_050895.1 · 64,232–64,453 bp · −
psbF · NC_050895.1 · 64,372–64,491 bp · −
psbE · NC_050895.1 · 64,506–64,757 bp · −
trnW-CCA · NC_050895.1 · 66,035–66,108 bp · −
trnP-UGG · NC_050895.1 · 66,287–66,360 bp · −
rpl20 · NC_050895.1 · 68,138–68,524 bp · −
rps12 · NC_050895.1 · 69,322–69,435 bp · −
rps12 · NC_050895.1 · 96,688–97,481 bp · −
clpP · NC_050895.1 · 69,559–71,478 bp · −
psbN · NC_050895.1 · 73,802–73,933 bp · −
rpoA · NC_050895.1 · 77,304–78,311 bp · −
rps11 · NC_050895.1 · 78,383–78,799 bp · −
rpl36 · NC_050895.1 · 78,909–79,022 bp · −
infA · NC_050895.1 · 79,118–79,351 bp · −
rps8 · NC_050895.1 · 79,478–79,882 bp · −
rpl14 · NC_050895.1 · 80,067–80,435 bp · −
rpl16 · NC_050895.1 · 80,567–81,844 bp · −
rps3 · NC_050895.1 · 81,980–82,642 bp · −
rpl22 · NC_050895.1 · 82,627–83,094 bp · −
rps19 · NC_050895.1 · 83,164–83,442 bp · −
rpl2 · NC_050895.1 · 83,502–84,984 bp · −
rpl23 · NC_050895.1 · 85,003–85,284 bp · −
trnI-CAU · NC_050895.1 · 85,450–85,523 bp · −
trnL-CAA · NC_050895.1 · 93,045–93,125 bp · −
ndhB · NC_050895.1 · 93,685–95,838 bp · −
rps7 · NC_050895.1 · 96,167–96,634 bp · −
trnN-GUU · NC_050895.1 · 107,532–107,603 bp · −
ndhF · NC_050895.1 · 108,957–111,191 bp · −
ndhD · NC_050895.1 · 113,877–115,418 bp · −
psaC · NC_050895.1 · 115,517–115,762 bp · −
ndhE · NC_050895.1 · 116,014–116,316 bp · −
ndhG · NC_050895.1 · 116,534–117,064 bp · −
ndhI · NC_050895.1 · 117,447–117,953 bp · −
ndhA · NC_050895.1 · 118,034–120,130 bp · −
ndhH · NC_050895.1 · 120,132–121,367 bp · −
rps15 · NC_050895.1 · 121,413–121,685 bp · −
ycf1 · NC_050895.1 · 122,093–127,738 bp · −
trnR-ACG · NC_050895.1 · 128,548–128,621 bp · −
rrn5 · NC_050895.1 · 128,865–128,985 bp · −
rrn4.5 · NC_050895.1 · 129,241–129,343 bp · −
rrn23 · NC_050895.1 · 129,444–132,252 bp · −
trnA-UGC · NC_050895.1 · 132,418–133,294 bp · −
trnI-GAU · NC_050895.1 · 133,359–134,371 bp · −
rrn16 · NC_050895.1 · 134,670–136,160 bp · −
trnV-GAC · NC_050895.1 · 136,387–136,458 bp · −
ycf15 · NC_050895.1 · 142,776–143,039 bp · −
ycf2 · NC_050895.1 · 143,115–149,948 bp · −
psbK · NC_050895.1 · 7,392–7,580 bp · +
psbI · NC_050895.1 · 7,974–8,084 bp · +
trnG-UCC · NC_050895.1 · 9,014–9,766 bp · +
trnR-UCU · NC_050895.1 · 9,960–10,031 bp · +
trnC-GCA · NC_050895.1 · 27,936–28,006 bp · +
petN · NC_050895.1 · 28,177–28,266 bp · +
trnT-GGU · NC_050895.1 · 30,555–30,626 bp · +
psbD · NC_050895.1 · 32,004–33,065 bp · +
psbC · NC_050895.1 · 33,013–34,434 bp · +
psbZ · NC_050895.1 · 35,107–35,295 bp · +
trnG-GCC · NC_050895.1 · 35,567–35,637 bp · +
trnS-GGA · NC_050895.1 · 44,505–44,591 bp · +
trnL-UAA · NC_050895.1 · 46,596–47,136 bp · +
trnF-GAA · NC_050895.1 · 47,435–47,507 bp · +
trnM-CAU · NC_050895.1 · 51,494–51,566 bp · +
rbcL · NC_050895.1 · 54,435–55,889 bp · +
accD · NC_050895.1 · 57,370–58,911 bp · +
psaI · NC_050895.1 · 59,386–59,496 bp · +
ycf4 · NC_050895.1 · 59,943–60,497 bp · +
cemA · NC_050895.1 · 61,111–61,800 bp · +
petA · NC_050895.1 · 62,021–62,983 bp · +
petL · NC_050895.1 · 65,533–65,628 bp · +
petG · NC_050895.1 · 65,807–65,920 bp · +
psaJ · NC_050895.1 · 66,650–66,784 bp · +
rpl33 · NC_050895.1 · 67,235–67,435 bp · +
rps18 · NC_050895.1 · 67,601–67,906 bp · +
rps12 · NC_050895.1 · 138,079–138,872 bp · +
psbB · NC_050895.1 · 71,927–73,453 bp · +
psbT · NC_050895.1 · 73,634–73,741 bp · +
psbH · NC_050895.1 · 74,039–74,260 bp · +
petB · NC_050895.1 · 74,394–75,737 bp · +
petD · NC_050895.1 · 75,931–77,127 bp · +
ycf2 · NC_050895.1 · 85,612–92,445 bp · +
ycf15 · NC_050895.1 · 92,521–92,784 bp · +
trnV-GAC · NC_050895.1 · 99,102–99,173 bp · +
rrn16 · NC_050895.1 · 99,400–100,890 bp · +
trnI-GAU · NC_050895.1 · 101,189–102,201 bp · +
trnA-UGC · NC_050895.1 · 102,266–103,142 bp · +
rrn23 · NC_050895.1 · 103,308–106,116 bp · +
rrn4.5 · NC_050895.1 · 106,217–106,319 bp · +
rrn5 · NC_050895.1 · 106,575–106,695 bp · +
trnR-ACG · NC_050895.1 · 106,939–107,012 bp · +
ycf1 · NC_050895.1 · 107,933–109,090 bp · +
rpl32 · NC_050895.1 · 111,617–111,787 bp · +
trnL-UAG · NC_050895.1 · 112,498–112,577 bp · +
ccsA · NC_050895.1 · 112,622–113,647 bp · +
trnN-GUU · NC_050895.1 · 127,957–128,028 bp · +
rps7 · NC_050895.1 · 138,926–139,393 bp · +
ndhB · NC_050895.1 · 139,722–141,875 bp · +
trnL-CAA · NC_050895.1 · 142,435–142,515 bp · +
trnI-CAU · NC_050895.1 · 150,037–150,110 bp · +
rpl23 · NC_050895.1 · 150,276–150,557 bp · +
rpl2 · NC_050895.1 · 150,576–152,058 bp · +
rps19 · NC_050895.1 · 152,118–152,159 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Salvia digitaloides
ANNOTATED PLASTOME
NC_050895.1
152,159 bp · 134 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38040 76080 114119 152159 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2 rps19
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
135 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 12 85 74 Locate
psbA gene − 395 1453 1059 Locate
trnK-UUU gene − 1685 4280 2596 Locate
matK gene − 2019 3548 1530 Locate
rps16 gene − 4855 5974 1120 Locate
trnQ-UUG gene − 6950 7021 72 Locate
psbK gene + 7392 7580 189 Locate
psbI gene + 7974 8084 111 Locate
trnS-GCU gene − 8241 8328 88 Locate
trnG-UCC gene + 9014 9766 753 Locate
trnR-UCU gene + 9960 10031 72 Locate
atpA gene − 10140 11663 1524 Locate
atpF gene − 11769 13011 1243 Locate
atpH gene − 13278 13523 246 Locate
atpI gene − 14525 15268 744 Locate
rps2 gene − 15493 16203 711 Locate
rpoC2 gene − 16403 20581 4179 Locate
rpoC1 gene − 20740 23553 2814 Locate
rpoB gene − 23580 26792 3213 Locate
trnC-GCA gene + 27936 28006 71 Locate
petN gene + 28177 28266 90 Locate
psbM gene − 28984 29088 105 Locate
trnD-GUC gene − 29610 29683 74 Locate
trnY-GUA gene − 29794 29877 84 Locate
trnE-UUC gene − 29943 30015 73 Locate
trnT-GGU gene + 30555 30626 72 Locate
psbD gene + 32004 33065 1062 Locate
psbC gene + 33013 34434 1422 Locate
trnS-UGA gene − 34680 34772 93 Locate
psbZ gene + 35107 35295 189 Locate
trnG-GCC gene + 35567 35637 71 Locate
trnfM-CAU gene − 35811 35884 74 Locate
rps14 gene − 36029 36331 303 Locate
psaB gene − 36454 38658 2205 Locate
psaA gene − 38684 40936 2253 Locate
ycf3 gene − 41726 43686 1961 Locate
trnS-GGA gene + 44505 44591 87 Locate
rps4 gene − 44868 45473 606 Locate
trnT-UGU gene − 45846 45918 73 Locate
trnL-UAA gene + 46596 47136 541 Locate
trnF-GAA gene + 47435 47507 73 Locate
ndhJ gene − 48045 48521 477 Locate
ndhK gene − 48632 49309 678 Locate
ndhC gene − 49361 49723 363 Locate
trnV-UAC gene − 50665 51313 649 Locate
trnM-CAU gene + 51494 51566 73 Locate
atpE gene − 51777 52178 402 Locate
atpB gene − 52175 53671 1497 Locate
rbcL gene + 54435 55889 1455 Locate
accD gene + 57370 58911 1542 Locate
psaI gene + 59386 59496 111 Locate
ycf4 gene + 59943 60497 555 Locate
cemA gene + 61111 61800 690 Locate
petA gene + 62021 62983 963 Locate
psbJ gene − 63980 64102 123 Locate
psbL gene − 64232 64453 222 Locate
psbF gene − 64372 64491 120 Locate
psbE gene − 64506 64757 252 Locate
petL gene + 65533 65628 96 Locate
petG gene + 65807 65920 114 Locate
trnW-CCA gene − 66035 66108 74 Locate
trnP-UGG gene − 66287 66360 74 Locate
psaJ gene + 66650 66784 135 Locate
rpl33 gene + 67235 67435 201 Locate
rps18 gene + 67601 67906 306 Locate
rpl20 gene − 68138 68524 387 Locate
rps12 gene − 69322 69435 114 Locate
clpP gene − 69559 71478 1920 Locate
psbB gene + 71927 73453 1527 Locate
psbT gene + 73634 73741 108 Locate
psbN gene − 73802 73933 132 Locate
psbH gene + 74039 74260 222 Locate
petB gene + 74394 75737 1344 Locate
petD gene + 75931 77127 1197 Locate
rpoA gene − 77304 78311 1008 Locate
rps11 gene − 78383 78799 417 Locate
rpl36 gene − 78909 79022 114 Locate
infA gene − 79118 79351 234 Locate
rps8 gene − 79478 79882 405 Locate
rpl14 gene − 80067 80435 369 Locate
rpl16 gene − 80567 81844 1278 Locate
rps3 gene − 81980 82642 663 Locate
rpl22 gene − 82627 83094 468 Locate
rps19 gene − 83164 83442 279 Locate
rpl2 gene − 83502 84984 1483 Locate
rpl23 gene − 85003 85284 282 Locate
trnI-CAU gene − 85450 85523 74 Locate
ycf2 gene + 85612 92445 6834 Locate
ycf15 gene + 92521 92784 264 Locate
trnL-CAA gene − 93045 93125 81 Locate
ndhB gene − 93685 95838 2154 Locate
rps7 gene − 96167 96634 468 Locate
rps12 gene − 96688 97481 794 Locate
trnV-GAC gene + 99102 99173 72 Locate
rrn16 gene + 99400 100890 1491 Locate
trnI-GAU gene + 101189 102201 1013 Locate
trnA-UGC gene + 102266 103142 877 Locate
rrn23 gene + 103308 106116 2809 Locate
rrn4.5 gene + 106217 106319 103 Locate
rrn5 gene + 106575 106695 121 Locate
trnR-ACG gene + 106939 107012 74 Locate
trnN-GUU gene − 107532 107603 72 Locate
ycf1 gene + 107933 109090 1158 Locate
ndhF gene − 108957 111191 2235 Locate
rpl32 gene + 111617 111787 171 Locate
trnL-UAG gene + 112498 112577 80 Locate
ccsA gene + 112622 113647 1026 Locate
ndhD gene − 113877 115418 1542 Locate
psaC gene − 115517 115762 246 Locate
ndhE gene − 116014 116316 303 Locate
ndhG gene − 116534 117064 531 Locate
ndhI gene − 117447 117953 507 Locate
ndhA gene − 118034 120130 2097 Locate
ndhH gene − 120132 121367 1236 Locate
rps15 gene − 121413 121685 273 Locate
ycf1 gene − 122093 127738 5646 Locate
trnN-GUU gene + 127957 128028 72 Locate
trnR-ACG gene − 128548 128621 74 Locate
rrn5 gene − 128865 128985 121 Locate
rrn4.5 gene − 129241 129343 103 Locate
rrn23 gene − 129444 132252 2809 Locate
trnA-UGC gene − 132418 133294 877 Locate
trnI-GAU gene − 133359 134371 1013 Locate
rrn16 gene − 134670 136160 1491 Locate
trnV-GAC gene − 136387 136458 72 Locate
rps12 gene + 138079 138872 794 Locate
rps7 gene + 138926 139393 468 Locate
ndhB gene + 139722 141875 2154 Locate
trnL-CAA gene + 142435 142515 81 Locate
ycf15 gene − 142776 143039 264 Locate
ycf2 gene − 143115 149948 6834 Locate
trnI-CAU gene + 150037 150110 74 Locate
rpl23 gene + 150276 150557 282 Locate
rpl2 gene + 150576 152058 1483 Locate
rps19 gene + 152118 152159 42 Locate
Status Available
Accession NC_050895.1
Length 152,159 bp
GC content 38.0%
Annotated genes 134
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 27 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources