Salvia grandifolia chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
LSC
IR
SSC
IR
trnH-GUG · NC_084046.1 · 11–84 bp · −
psbA · NC_084046.1 · 382–1,440 bp · −
trnK-UUU · NC_084046.1 · 1,672–4,254 bp · −
matK · NC_084046.1 · 1,992–3,515 bp · −
rps16 · NC_084046.1 · 4,821–5,915 bp · −
trnQ-UUG · NC_084046.1 · 6,467–6,538 bp · −
trnS-GCU · NC_084046.1 · 7,771–7,858 bp · −
atpA · NC_084046.1 · 9,680–11,203 bp · −
atpF · NC_084046.1 · 11,300–12,548 bp · −
atpH · NC_084046.1 · 12,820–13,065 bp · −
atpI · NC_084046.1 · 14,076–14,819 bp · −
rps2 · NC_084046.1 · 15,044–15,754 bp · −
rpoC2 · NC_084046.1 · 15,975–20,165 bp · −
rpoC1 · NC_084046.1 · 20,330–23,130 bp · −
rpoB · NC_084046.1 · 23,157–26,369 bp · −
psbM · NC_084046.1 · 28,729–28,833 bp · −
trnD-GUC · NC_084046.1 · 29,345–29,418 bp · −
trnY-GUA · NC_084046.1 · 29,529–29,612 bp · −
trnE-UUC · NC_084046.1 · 29,685–29,757 bp · −
trnS-UGA · NC_084046.1 · 34,401–34,493 bp · −
trnfM-CAU · NC_084046.1 · 35,529–35,602 bp · −
rps14 · NC_084046.1 · 35,747–36,049 bp · −
psaB · NC_084046.1 · 36,172–38,376 bp · −
psaA · NC_084046.1 · 38,402–40,654 bp · −
ycf3 · NC_084046.1 · 41,440–43,392 bp · −
rps4 · NC_084046.1 · 44,577–45,182 bp · −
trnT-UGU · NC_084046.1 · 45,533–45,605 bp · −
ndhJ · NC_084046.1 · 47,845–48,321 bp · −
ndhK · NC_084046.1 · 48,432–49,109 bp · −
ndhC · NC_084046.1 · 49,161–49,523 bp · −
trnV-UAC · NC_084046.1 · 50,496–51,144 bp · −
atpE · NC_084046.1 · 51,614–52,015 bp · −
atpB · NC_084046.1 · 52,012–53,508 bp · −
psbJ · NC_084046.1 · 62,953–63,075 bp · −
psbL · NC_084046.1 · 63,205–63,321 bp · −
psbF · NC_084046.1 · 63,345–63,464 bp · −
psbE · NC_084046.1 · 63,479–63,730 bp · −
trnW-CCA · NC_084046.1 · 65,116–65,189 bp · −
trnP-UGG · NC_084046.1 · 65,365–65,438 bp · −
rpl20 · NC_084046.1 · 67,193–67,579 bp · −
rps12 · NC_084046.1 · 68,375–68,488 bp · −
rps12 · NC_084046.1 · 95,703–96,496 bp · −
clpP · NC_084046.1 · 68,611–70,505 bp · −
psbN · NC_084046.1 · 72,837–72,968 bp · −
rpoA · NC_084046.1 · 76,345–77,352 bp · −
rps11 · NC_084046.1 · 77,423–77,839 bp · −
rpl36 · NC_084046.1 · 77,949–78,062 bp · −
infA · NC_084046.1 · 78,158–78,391 bp · −
rps8 · NC_084046.1 · 78,512–78,916 bp · −
rpl14 · NC_084046.1 · 79,088–79,456 bp · −
rpl16 · NC_084046.1 · 79,585–80,854 bp · −
rps3 · NC_084046.1 · 80,997–81,659 bp · −
rpl22 · NC_084046.1 · 81,644–82,111 bp · −
rps19 · NC_084046.1 · 82,175–82,453 bp · −
rpl2 · NC_084046.1 · 82,513–84,000 bp · −
rpl23 · NC_084046.1 · 84,019–84,300 bp · −
trnI-CAU · NC_084046.1 · 84,466–84,539 bp · −
trnL-CAA · NC_084046.1 · 92,062–92,142 bp · −
ndhB · NC_084046.1 · 92,694–94,853 bp · −
rps7 · NC_084046.1 · 95,182–95,649 bp · −
trnN-GUU · NC_084046.1 · 106,573–106,644 bp · −
ndhF · NC_084046.1 · 107,998–110,229 bp · −
ndhD · NC_084046.1 · 112,965–114,506 bp · −
psaC · NC_084046.1 · 114,600–114,845 bp · −
ndhE · NC_084046.1 · 115,096–115,398 bp · −
ndhG · NC_084046.1 · 115,615–116,145 bp · −
ndhI · NC_084046.1 · 116,526–117,032 bp · −
ndhA · NC_084046.1 · 117,113–119,228 bp · −
ndhH · NC_084046.1 · 119,230–120,441 bp · −
rps15 · NC_084046.1 · 120,511–120,783 bp · −
ycf1 · NC_084046.1 · 121,195–126,816 bp · −
trnR-ACG · NC_084046.1 · 127,632–127,705 bp · −
rrn5 · NC_084046.1 · 127,949–128,069 bp · −
rrn4.5 · NC_084046.1 · 128,319–128,421 bp · −
rrn23 · NC_084046.1 · 128,522–131,338 bp · −
trnA-UGC · NC_084046.1 · 131,499–132,381 bp · −
trnI-GAU · NC_084046.1 · 132,452–133,471 bp · −
rrn16 · NC_084046.1 · 133,770–135,260 bp · −
trnV-GAC · NC_084046.1 · 135,487–135,558 bp · −
ycf15 · NC_084046.1 · 141,873–142,121 bp · −
ycf2 · NC_084046.1 · 142,212–149,051 bp · −
psbK · NC_084046.1 · 6,931–7,110 bp · +
psbI · NC_084046.1 · 7,523–7,633 bp · +
trnG-UCC · NC_084046.1 · 8,566–9,322 bp · +
trnR-UCU · NC_084046.1 · 9,503–9,574 bp · +
trnC-GCA · NC_084046.1 · 27,443–27,513 bp · +
petN · NC_084046.1 · 27,677–27,766 bp · +
trnT-GGU · NC_084046.1 · 30,299–30,370 bp · +
psbD · NC_084046.1 · 31,721–32,782 bp · +
psbC · NC_084046.1 · 32,730–34,151 bp · +
psbZ · NC_084046.1 · 34,828–35,016 bp · +
trnG-GCC · NC_084046.1 · 35,293–35,363 bp · +
trnS-GGA · NC_084046.1 · 44,228–44,314 bp · +
trnL-UAA · NC_084046.1 · 46,266–46,838 bp · +
trnF-GAA · NC_084046.1 · 47,122–47,194 bp · +
trnM-CAU · NC_084046.1 · 51,325–51,397 bp · +
rbcL · NC_084046.1 · 54,279–55,733 bp · +
accD · NC_084046.1 · 56,375–57,856 bp · +
psaI · NC_084046.1 · 58,323–58,433 bp · +
ycf4 · NC_084046.1 · 58,883–59,437 bp · +
cemA · NC_084046.1 · 60,089–60,778 bp · +
petA · NC_084046.1 · 60,987–61,949 bp · +
petL · NC_084046.1 · 64,612–64,707 bp · +
petG · NC_084046.1 · 64,887–65,000 bp · +
psaJ · NC_084046.1 · 65,708–65,842 bp · +
rpl33 · NC_084046.1 · 66,280–66,480 bp · +
rps18 · NC_084046.1 · 66,651–66,956 bp · +
rps12 · NC_084046.1 · 137,183–137,976 bp · +
psbB · NC_084046.1 · 70,959–72,485 bp · +
psbT · NC_084046.1 · 72,669–72,776 bp · +
psbH · NC_084046.1 · 73,074–73,295 bp · +
petB · NC_084046.1 · 73,421–74,790 bp · +
petD · NC_084046.1 · 74,978–76,168 bp · +
ycf2 · NC_084046.1 · 84,628–91,467 bp · +
ycf15 · NC_084046.1 · 91,558–91,806 bp · +
trnV-GAC · NC_084046.1 · 98,121–98,192 bp · +
rrn16 · NC_084046.1 · 98,419–99,909 bp · +
trnI-GAU · NC_084046.1 · 100,208–101,227 bp · +
trnA-UGC · NC_084046.1 · 101,298–102,180 bp · +
rrn23 · NC_084046.1 · 102,341–105,157 bp · +
rrn4.5 · NC_084046.1 · 105,258–105,360 bp · +
rrn5 · NC_084046.1 · 105,610–105,730 bp · +
trnR-ACG · NC_084046.1 · 105,974–106,047 bp · +
ycf1 · NC_084046.1 · 106,863–108,033 bp · +
rpl32 · NC_084046.1 · 110,662–110,859 bp · +
trnL-UAG · NC_084046.1 · 111,583–111,662 bp · +
ccsA · NC_084046.1 · 111,761–112,732 bp · +
trnN-GUU · NC_084046.1 · 127,035–127,106 bp · +
rps7 · NC_084046.1 · 138,030–138,497 bp · +
ndhB · NC_084046.1 · 138,826–140,985 bp · +
trnL-CAA · NC_084046.1 · 141,537–141,617 bp · +
trnI-CAU · NC_084046.1 · 149,140–149,213 bp · +
rpl23 · NC_084046.1 · 149,379–149,660 bp · +
rpl2 · NC_084046.1 · 149,679–151,166 bp · +
rps19 · NC_084046.1 · 151,226–151,267 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Salvia grandifolia
ANNOTATED PLASTOME
NC_084046.1
151,268 bp · 134 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37817 75634 113451 151268 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2 rps19
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
135 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 11 84 74 Locate
psbA gene − 382 1440 1059 Locate
trnK-UUU gene − 1672 4254 2583 Locate
matK gene − 1992 3515 1524 Locate
rps16 gene − 4821 5915 1095 Locate
trnQ-UUG gene − 6467 6538 72 Locate
psbK gene + 6931 7110 180 Locate
psbI gene + 7523 7633 111 Locate
trnS-GCU gene − 7771 7858 88 Locate
trnG-UCC gene + 8566 9322 757 Locate
trnR-UCU gene + 9503 9574 72 Locate
atpA gene − 9680 11203 1524 Locate
atpF gene − 11300 12548 1249 Locate
atpH gene − 12820 13065 246 Locate
atpI gene − 14076 14819 744 Locate
rps2 gene − 15044 15754 711 Locate
rpoC2 gene − 15975 20165 4191 Locate
rpoC1 gene − 20330 23130 2801 Locate
rpoB gene − 23157 26369 3213 Locate
trnC-GCA gene + 27443 27513 71 Locate
petN gene + 27677 27766 90 Locate
psbM gene − 28729 28833 105 Locate
trnD-GUC gene − 29345 29418 74 Locate
trnY-GUA gene − 29529 29612 84 Locate
trnE-UUC gene − 29685 29757 73 Locate
trnT-GGU gene + 30299 30370 72 Locate
psbD gene + 31721 32782 1062 Locate
psbC gene + 32730 34151 1422 Locate
trnS-UGA gene − 34401 34493 93 Locate
psbZ gene + 34828 35016 189 Locate
trnG-GCC gene + 35293 35363 71 Locate
trnfM-CAU gene − 35529 35602 74 Locate
rps14 gene − 35747 36049 303 Locate
psaB gene − 36172 38376 2205 Locate
psaA gene − 38402 40654 2253 Locate
ycf3 gene − 41440 43392 1953 Locate
trnS-GGA gene + 44228 44314 87 Locate
rps4 gene − 44577 45182 606 Locate
trnT-UGU gene − 45533 45605 73 Locate
trnL-UAA gene + 46266 46838 573 Locate
trnF-GAA gene + 47122 47194 73 Locate
ndhJ gene − 47845 48321 477 Locate
ndhK gene − 48432 49109 678 Locate
ndhC gene − 49161 49523 363 Locate
trnV-UAC gene − 50496 51144 649 Locate
trnM-CAU gene + 51325 51397 73 Locate
atpE gene − 51614 52015 402 Locate
atpB gene − 52012 53508 1497 Locate
rbcL gene + 54279 55733 1455 Locate
accD gene + 56375 57856 1482 Locate
psaI gene + 58323 58433 111 Locate
ycf4 gene + 58883 59437 555 Locate
cemA gene + 60089 60778 690 Locate
petA gene + 60987 61949 963 Locate
psbJ gene − 62953 63075 123 Locate
psbL gene − 63205 63321 117 Locate
psbF gene − 63345 63464 120 Locate
psbE gene − 63479 63730 252 Locate
petL gene + 64612 64707 96 Locate
petG gene + 64887 65000 114 Locate
trnW-CCA gene − 65116 65189 74 Locate
trnP-UGG gene − 65365 65438 74 Locate
psaJ gene + 65708 65842 135 Locate
rpl33 gene + 66280 66480 201 Locate
rps18 gene + 66651 66956 306 Locate
rpl20 gene − 67193 67579 387 Locate
rps12 gene − 68375 68488 114 Locate
clpP gene − 68611 70505 1895 Locate
psbB gene + 70959 72485 1527 Locate
psbT gene + 72669 72776 108 Locate
psbN gene − 72837 72968 132 Locate
psbH gene + 73074 73295 222 Locate
petB gene + 73421 74790 1370 Locate
petD gene + 74978 76168 1191 Locate
rpoA gene − 76345 77352 1008 Locate
rps11 gene − 77423 77839 417 Locate
rpl36 gene − 77949 78062 114 Locate
infA gene − 78158 78391 234 Locate
rps8 gene − 78512 78916 405 Locate
rpl14 gene − 79088 79456 369 Locate
rpl16 gene − 79585 80854 1270 Locate
rps3 gene − 80997 81659 663 Locate
rpl22 gene − 81644 82111 468 Locate
rps19 gene − 82175 82453 279 Locate
rpl2 gene − 82513 84000 1488 Locate
rpl23 gene − 84019 84300 282 Locate
trnI-CAU gene − 84466 84539 74 Locate
ycf2 gene + 84628 91467 6840 Locate
ycf15 gene + 91558 91806 249 Locate
trnL-CAA gene − 92062 92142 81 Locate
ndhB gene − 92694 94853 2160 Locate
rps7 gene − 95182 95649 468 Locate
rps12 gene − 95703 96496 794 Locate
trnV-GAC gene + 98121 98192 72 Locate
rrn16 gene + 98419 99909 1491 Locate
trnI-GAU gene + 100208 101227 1020 Locate
trnA-UGC gene + 101298 102180 883 Locate
rrn23 gene + 102341 105157 2817 Locate
rrn4.5 gene + 105258 105360 103 Locate
rrn5 gene + 105610 105730 121 Locate
trnR-ACG gene + 105974 106047 74 Locate
trnN-GUU gene − 106573 106644 72 Locate
ycf1 gene + 106863 108033 1171 Locate
ndhF gene − 107998 110229 2232 Locate
rpl32 gene + 110662 110859 198 Locate
trnL-UAG gene + 111583 111662 80 Locate
ccsA gene + 111761 112732 972 Locate
ndhD gene − 112965 114506 1542 Locate
psaC gene − 114600 114845 246 Locate
ndhE gene − 115096 115398 303 Locate
ndhG gene − 115615 116145 531 Locate
ndhI gene − 116526 117032 507 Locate
ndhA gene − 117113 119228 2116 Locate
ndhH gene − 119230 120441 1212 Locate
rps15 gene − 120511 120783 273 Locate
ycf1 gene − 121195 126816 5622 Locate
trnN-GUU gene + 127035 127106 72 Locate
trnR-ACG gene − 127632 127705 74 Locate
rrn5 gene − 127949 128069 121 Locate
rrn4.5 gene − 128319 128421 103 Locate
rrn23 gene − 128522 131338 2817 Locate
trnA-UGC gene − 131499 132381 883 Locate
trnI-GAU gene − 132452 133471 1020 Locate
rrn16 gene − 133770 135260 1491 Locate
trnV-GAC gene − 135487 135558 72 Locate
rps12 gene + 137183 137976 794 Locate
rps7 gene + 138030 138497 468 Locate
ndhB gene + 138826 140985 2160 Locate
trnL-CAA gene + 141537 141617 81 Locate
ycf15 gene − 141873 142121 249 Locate
ycf2 gene − 142212 149051 6840 Locate
trnI-CAU gene + 149140 149213 74 Locate
rpl23 gene + 149379 149660 282 Locate
rpl2 gene + 149679 151166 1488 Locate
rps19 gene + 151226 151267 42 Locate
Status Available
Accession NC_084046.1
Length 151,268 bp
GC content 38.0%
Annotated genes 134
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 27 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources