Salvia honania chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
trnH-GUG · NC_058852.1 · 4–77 bp · −
psbA · NC_058852.1 · 385–1,443 bp · −
trnK-UUU · NC_058852.1 · 1,666–4,271 bp · −
matK · NC_058852.1 · 1,965–3,527 bp · −
rps16 · NC_058852.1 · 4,840–5,949 bp · −
trnQ-UUG · NC_058852.1 · 6,932–7,003 bp · −
trnS-GCU · NC_058852.1 · 8,237–8,324 bp · −
atpA · NC_058852.1 · 10,133–11,656 bp · −
atpF · NC_058852.1 · 11,752–12,999 bp · −
atpH · NC_058852.1 · 13,273–13,518 bp · −
atpI · NC_058852.1 · 14,489–15,232 bp · −
rps2 · NC_058852.1 · 15,459–16,169 bp · −
rpoC2 · NC_058852.1 · 16,378–20,565 bp · −
rpoC1 · NC_058852.1 · 20,723–23,536 bp · −
rpoB · NC_058852.1 · 23,563–26,775 bp · −
psbM · NC_058852.1 · 29,215–29,319 bp · −
trnD-GUC · NC_058852.1 · 29,839–29,912 bp · −
trnY-GUA · NC_058852.1 · 30,023–30,106 bp · −
trnE-UUC · NC_058852.1 · 30,178–30,250 bp · −
trnS-UGA · NC_058852.1 · 34,917–35,009 bp · −
trnfM-CAU · NC_058852.1 · 36,047–36,120 bp · −
rps14 · NC_058852.1 · 36,265–36,567 bp · −
psaB · NC_058852.1 · 36,690–38,894 bp · −
psaA · NC_058852.1 · 38,920–41,172 bp · −
ycf3 · NC_058852.1 · 41,962–43,906 bp · −
rps4 · NC_058852.1 · 45,085–45,690 bp · −
trnT-UGU · NC_058852.1 · 46,060–46,132 bp · −
ndhJ · NC_058852.1 · 48,252–48,728 bp · −
ndhK · NC_058852.1 · 48,839–49,516 bp · −
ndhC · NC_058852.1 · 49,568–49,930 bp · −
trnV-UAC · NC_058852.1 · 50,886–51,539 bp · −
atpE · NC_058852.1 · 51,996–52,397 bp · −
atpB · NC_058852.1 · 52,394–53,890 bp · −
psbJ · NC_058852.1 · 63,352–63,474 bp · −
psbL · NC_058852.1 · 63,604–63,720 bp · −
psbF · NC_058852.1 · 63,744–63,863 bp · −
psbE · NC_058852.1 · 63,878–64,129 bp · −
trnW-CCA · NC_058852.1 · 65,438–65,511 bp · −
trnP-UGG · NC_058852.1 · 65,682–65,755 bp · −
rpl20 · NC_058852.1 · 67,538–67,924 bp · −
rps12 · NC_058852.1 · 68,739–68,852 bp · −
rps12 · NC_058852.1 · 96,105–96,888 bp · −
clpP · NC_058852.1 · 68,976–70,890 bp · −
psbN · NC_058852.1 · 73,213–73,344 bp · −
rpoA · NC_058852.1 · 76,716–77,723 bp · −
rps11 · NC_058852.1 · 77,795–78,211 bp · −
rpl36 · NC_058852.1 · 78,321–78,434 bp · −
infA · NC_058852.1 · 78,530–78,763 bp · −
rps8 · NC_058852.1 · 78,890–79,294 bp · −
rpl14 · NC_058852.1 · 79,479–79,847 bp · −
rpl16 · NC_058852.1 · 79,979–81,261 bp · −
rps3 · NC_058852.1 · 81,397–82,059 bp · −
rpl22 · NC_058852.1 · 82,044–82,511 bp · −
rps19 · NC_058852.1 · 82,581–82,730 bp · −
rpl2 · NC_058852.1 · 82,919–84,401 bp · −
rpl23 · NC_058852.1 · 84,420–84,701 bp · −
trnI-CAU · NC_058852.1 · 84,867–84,940 bp · −
trnL-CAA · NC_058852.1 · 92,462–92,542 bp · −
ndhB · NC_058852.1 · 93,102–95,255 bp · −
rps7 · NC_058852.1 · 95,584–96,051 bp · −
trnN-GUU · NC_058852.1 · 106,944–107,015 bp · −
ndhF · NC_058852.1 · 108,369–110,585 bp · −
ndhD · NC_058852.1 · 113,282–114,823 bp · −
psaC · NC_058852.1 · 114,947–115,192 bp · −
ndhE · NC_058852.1 · 115,443–115,748 bp · −
ndhG · NC_058852.1 · 115,969–116,499 bp · −
ndhI · NC_058852.1 · 116,871–117,377 bp · −
ndhA · NC_058852.1 · 117,458–119,534 bp · −
ndhH · NC_058852.1 · 119,536–120,717 bp · −
rps15 · NC_058852.1 · 120,817–121,089 bp · −
ycf1 · NC_058852.1 · 121,515–127,031 bp · −
trnR-ACG · NC_058852.1 · 127,952–128,025 bp · −
rrn5 · NC_058852.1 · 128,269–128,389 bp · −
rrn4.5 · NC_058852.1 · 128,645–128,747 bp · −
rrn23 · NC_058852.1 · 128,846–131,656 bp · −
trnA-UGC · NC_058852.1 · 131,822–132,698 bp · −
trnI-GAU · NC_058852.1 · 132,763–133,774 bp · −
rrn16 · NC_058852.1 · 134,073–135,563 bp · −
trnV-GAC · NC_058852.1 · 135,790–135,861 bp · −
ycf15 · NC_058852.1 · 142,175–142,372 bp · −
ycf2 · NC_058852.1 · 142,514–149,347 bp · −
psbK · NC_058852.1 · 7,397–7,576 bp · +
psbI · NC_058852.1 · 7,973–8,083 bp · +
trnG-UCC · NC_058852.1 · 9,016–9,768 bp · +
trnR-UCU · NC_058852.1 · 9,950–10,021 bp · +
trnC-GCA · NC_058852.1 · 27,916–27,986 bp · +
petN · NC_058852.1 · 28,149–28,238 bp · +
trnT-GGU · NC_058852.1 · 30,789–30,860 bp · +
psbD · NC_058852.1 · 32,240–33,301 bp · +
psbC · NC_058852.1 · 33,364–34,671 bp · +
psbZ · NC_058852.1 · 35,344–35,532 bp · +
trnG-GCC · NC_058852.1 · 35,804–35,874 bp · +
trnS-GGA · NC_058852.1 · 44,722–44,808 bp · +
trnL-UAA · NC_058852.1 · 46,808–47,348 bp · +
trnF-GAA · NC_058852.1 · 47,647–47,719 bp · +
trnM-CAU · NC_058852.1 · 51,728–51,800 bp · +
rbcL · NC_058852.1 · 54,675–56,108 bp · +
accD · NC_058852.1 · 56,811–58,298 bp · +
psaI · NC_058852.1 · 58,771–58,881 bp · +
ycf4 · NC_058852.1 · 59,334–59,888 bp · +
cemA · NC_058852.1 · 60,436–61,125 bp · +
petA · NC_058852.1 · 61,331–62,293 bp · +
petL · NC_058852.1 · 64,936–65,031 bp · +
petG · NC_058852.1 · 65,210–65,323 bp · +
psaJ · NC_058852.1 · 66,046–66,180 bp · +
rpl33 · NC_058852.1 · 66,632–66,832 bp · +
rps18 · NC_058852.1 · 66,998–67,303 bp · +
rps12 · NC_058852.1 · 137,488–138,271 bp · +
psbB · NC_058852.1 · 71,340–72,866 bp · +
psbT · NC_058852.1 · 73,045–73,152 bp · +
psbH · NC_058852.1 · 73,450–73,671 bp · +
petB · NC_058852.1 · 73,797–75,149 bp · +
petD · NC_058852.1 · 75,343–76,539 bp · +
ycf2 · NC_058852.1 · 85,029–91,862 bp · +
ycf15 · NC_058852.1 · 92,004–92,201 bp · +
trnV-GAC · NC_058852.1 · 98,515–98,586 bp · +
rrn16 · NC_058852.1 · 98,813–100,303 bp · +
trnI-GAU · NC_058852.1 · 100,602–101,613 bp · +
trnA-UGC · NC_058852.1 · 101,678–102,554 bp · +
rrn23 · NC_058852.1 · 102,720–105,530 bp · +
rrn4.5 · NC_058852.1 · 105,629–105,731 bp · +
rrn5 · NC_058852.1 · 105,987–106,107 bp · +
trnR-ACG · NC_058852.1 · 106,351–106,424 bp · +
rpl32 · NC_058852.1 · 111,028–111,198 bp · +
trnL-UAG · NC_058852.1 · 111,903–111,982 bp · +
ccsA · NC_058852.1 · 112,075–113,052 bp · +
trnN-GUU · NC_058852.1 · 127,361–127,432 bp · +
rps7 · NC_058852.1 · 138,325–138,792 bp · +
ndhB · NC_058852.1 · 139,121–141,274 bp · +
trnL-CAA · NC_058852.1 · 141,834–141,914 bp · +
trnI-CAU · NC_058852.1 · 149,436–149,509 bp · +
rpl23 · NC_058852.1 · 149,675–149,956 bp · +
rpl2 · NC_058852.1 · 149,975–151,457 bp · +
rps19 · NC_058852.1 · 151,517–151,552 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Salvia honania
ANNOTATED PLASTOME
NC_058852.1
151,559 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37890 75780 113669 151559 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2 rps19
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 4 77 74 Locate
psbA gene − 385 1443 1059 Locate
trnK-UUU gene − 1666 4271 2606 Locate
matK gene − 1965 3527 1563 Locate
rps16 gene − 4840 5949 1110 Locate
trnQ-UUG gene − 6932 7003 72 Locate
psbK gene + 7397 7576 180 Locate
psbI gene + 7973 8083 111 Locate
trnS-GCU gene − 8237 8324 88 Locate
trnG-UCC gene + 9016 9768 753 Locate
trnR-UCU gene + 9950 10021 72 Locate
atpA gene − 10133 11656 1524 Locate
atpF gene − 11752 12999 1248 Locate
atpH gene − 13273 13518 246 Locate
atpI gene − 14489 15232 744 Locate
rps2 gene − 15459 16169 711 Locate
rpoC2 gene − 16378 20565 4188 Locate
rpoC1 gene − 20723 23536 2814 Locate
rpoB gene − 23563 26775 3213 Locate
trnC-GCA gene + 27916 27986 71 Locate
petN gene + 28149 28238 90 Locate
psbM gene − 29215 29319 105 Locate
trnD-GUC gene − 29839 29912 74 Locate
trnY-GUA gene − 30023 30106 84 Locate
trnE-UUC gene − 30178 30250 73 Locate
trnT-GGU gene + 30789 30860 72 Locate
psbD gene + 32240 33301 1062 Locate
psbC gene + 33364 34671 1308 Locate
trnS-UGA gene − 34917 35009 93 Locate
psbZ gene + 35344 35532 189 Locate
trnG-GCC gene + 35804 35874 71 Locate
trnfM-CAU gene − 36047 36120 74 Locate
rps14 gene − 36265 36567 303 Locate
psaB gene − 36690 38894 2205 Locate
psaA gene − 38920 41172 2253 Locate
ycf3 gene − 41962 43906 1945 Locate
trnS-GGA gene + 44722 44808 87 Locate
rps4 gene − 45085 45690 606 Locate
trnT-UGU gene − 46060 46132 73 Locate
trnL-UAA gene + 46808 47348 541 Locate
trnF-GAA gene + 47647 47719 73 Locate
ndhJ gene − 48252 48728 477 Locate
ndhK gene − 48839 49516 678 Locate
ndhC gene − 49568 49930 363 Locate
trnV-UAC gene − 50886 51539 654 Locate
trnM-CAU gene + 51728 51800 73 Locate
atpE gene − 51996 52397 402 Locate
atpB gene − 52394 53890 1497 Locate
rbcL gene + 54675 56108 1434 Locate
accD gene + 56811 58298 1488 Locate
psaI gene + 58771 58881 111 Locate
ycf4 gene + 59334 59888 555 Locate
cemA gene + 60436 61125 690 Locate
petA gene + 61331 62293 963 Locate
psbJ gene − 63352 63474 123 Locate
psbL gene − 63604 63720 117 Locate
psbF gene − 63744 63863 120 Locate
psbE gene − 63878 64129 252 Locate
petL gene + 64936 65031 96 Locate
petG gene + 65210 65323 114 Locate
trnW-CCA gene − 65438 65511 74 Locate
trnP-UGG gene − 65682 65755 74 Locate
psaJ gene + 66046 66180 135 Locate
rpl33 gene + 66632 66832 201 Locate
rps18 gene + 66998 67303 306 Locate
rpl20 gene − 67538 67924 387 Locate
rps12 gene − 68739 68852 114 Locate
clpP gene − 68976 70890 1915 Locate
psbB gene + 71340 72866 1527 Locate
psbT gene + 73045 73152 108 Locate
psbN gene − 73213 73344 132 Locate
psbH gene + 73450 73671 222 Locate
petB gene + 73797 75149 1353 Locate
petD gene + 75343 76539 1197 Locate
rpoA gene − 76716 77723 1008 Locate
rps11 gene − 77795 78211 417 Locate
rpl36 gene − 78321 78434 114 Locate
infA gene − 78530 78763 234 Locate
rps8 gene − 78890 79294 405 Locate
rpl14 gene − 79479 79847 369 Locate
rpl16 gene − 79979 81261 1283 Locate
rps3 gene − 81397 82059 663 Locate
rpl22 gene − 82044 82511 468 Locate
rps19 gene − 82581 82730 150 Locate
rpl2 gene − 82919 84401 1483 Locate
rpl23 gene − 84420 84701 282 Locate
trnI-CAU gene − 84867 84940 74 Locate
ycf2 gene + 85029 91862 6834 Locate
ycf15 gene + 92004 92201 198 Locate
trnL-CAA gene − 92462 92542 81 Locate
ndhB gene − 93102 95255 2154 Locate
rps7 gene − 95584 96051 468 Locate
rps12 gene − 96105 96888 784 Locate
trnV-GAC gene + 98515 98586 72 Locate
rrn16 gene + 98813 100303 1491 Locate
trnI-GAU gene + 100602 101613 1012 Locate
trnA-UGC gene + 101678 102554 877 Locate
rrn23 gene + 102720 105530 2811 Locate
rrn4.5 gene + 105629 105731 103 Locate
rrn5 gene + 105987 106107 121 Locate
trnR-ACG gene + 106351 106424 74 Locate
trnN-GUU gene − 106944 107015 72 Locate
ndhF gene − 108369 110585 2217 Locate
rpl32 gene + 111028 111198 171 Locate
trnL-UAG gene + 111903 111982 80 Locate
ccsA gene + 112075 113052 978 Locate
ndhD gene − 113282 114823 1542 Locate
psaC gene − 114947 115192 246 Locate
ndhE gene − 115443 115748 306 Locate
ndhG gene − 115969 116499 531 Locate
ndhI gene − 116871 117377 507 Locate
ndhA gene − 117458 119534 2077 Locate
ndhH gene − 119536 120717 1182 Locate
rps15 gene − 120817 121089 273 Locate
ycf1 gene − 121515 127031 5517 Locate
trnN-GUU gene + 127361 127432 72 Locate
trnR-ACG gene − 127952 128025 74 Locate
rrn5 gene − 128269 128389 121 Locate
rrn4.5 gene − 128645 128747 103 Locate
rrn23 gene − 128846 131656 2811 Locate
trnA-UGC gene − 131822 132698 877 Locate
trnI-GAU gene − 132763 133774 1012 Locate
rrn16 gene − 134073 135563 1491 Locate
trnV-GAC gene − 135790 135861 72 Locate
rps12 gene + 137488 138271 784 Locate
rps7 gene + 138325 138792 468 Locate
ndhB gene + 139121 141274 2154 Locate
trnL-CAA gene + 141834 141914 81 Locate
ycf15 gene − 142175 142372 198 Locate
ycf2 gene − 142514 149347 6834 Locate
trnI-CAU gene + 149436 149509 74 Locate
rpl23 gene + 149675 149956 282 Locate
rpl2 gene + 149975 151457 1483 Locate
rps19 gene + 151517 151552 36 Locate
Status Available
Accession NC_058852.1
Length 151,559 bp
GC content 38.0%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 14 Ribosomal Protein 27 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 0
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources