Salvia iodantha chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
trnH-GUG · MT156366.1 · 2–75 bp · −
psbA · MT156366.1 · 394–1,452 bp · −
trnK-UUU · MT156366.1 · 1,684–4,249 bp · −
matK · MT156366.1 · 1,988–3,511 bp · −
rps16 · MT156366.1 · 4,815–5,913 bp · −
trnQ-UUG · MT156366.1 · 6,671–6,742 bp · −
trnS-GCU · MT156366.1 · 7,964–8,051 bp · −
atpA · MT156366.1 · 9,864–11,387 bp · −
atpF · MT156366.1 · 11,485–12,744 bp · −
atpH · MT156366.1 · 13,018–13,263 bp · −
atpI · MT156366.1 · 14,277–15,020 bp · −
rps2 · MT156366.1 · 15,244–15,954 bp · −
rpoC2 · MT156366.1 · 16,159–20,346 bp · −
rpoC1 · MT156366.1 · 20,513–23,348 bp · −
rpoB · MT156366.1 · 23,354–26,566 bp · −
psbM · MT156366.1 · 29,032–29,136 bp · −
trnD-GUC · MT156366.1 · 29,507–29,580 bp · −
trnY-GUA · MT156366.1 · 29,693–29,776 bp · −
trnE-UUC · MT156366.1 · 29,847–29,919 bp · −
trnS-UGA · MT156366.1 · 34,574–34,666 bp · −
trnfM-CAU · MT156366.1 · 35,686–35,759 bp · −
rps14 · MT156366.1 · 35,904–36,206 bp · −
psaB · MT156366.1 · 36,329–38,533 bp · −
psaA · MT156366.1 · 38,559–40,811 bp · −
ycf3 · MT156366.1 · 41,542–43,475 bp · −
rps4 · MT156366.1 · 44,665–45,270 bp · −
trnT-UGU · MT156366.1 · 45,631–45,703 bp · −
ndhJ · MT156366.1 · 47,767–48,243 bp · −
ndhK · MT156366.1 · 48,354–49,031 bp · −
ndhC · MT156366.1 · 49,083–49,445 bp · −
trnV-UAC · MT156366.1 · 50,250–50,889 bp · −
atpE · MT156366.1 · 51,332–51,733 bp · −
atpB · MT156366.1 · 51,730–53,226 bp · −
psbJ · MT156366.1 · 62,640–62,762 bp · −
psbL · MT156366.1 · 62,892–63,008 bp · −
psbF · MT156366.1 · 63,032–63,151 bp · −
psbE · MT156366.1 · 63,166–63,417 bp · −
trnW-CCA · MT156366.1 · 64,724–64,797 bp · −
trnP-UGG · MT156366.1 · 64,973–65,046 bp · −
rpl20 · MT156366.1 · 66,811–67,197 bp · −
rps12 · MT156366.1 · 67,998–68,111 bp · −
rps12 · MT156366.1 · 95,353–96,146 bp · −
clpP · MT156366.1 · 68,235–70,140 bp · −
psbN · MT156366.1 · 72,469–72,600 bp · −
rpoA · MT156366.1 · 75,965–76,972 bp · −
rps11 · MT156366.1 · 77,042–77,458 bp · −
rpl36 · MT156366.1 · 77,570–77,683 bp · −
infA · MT156366.1 · 77,779–78,012 bp · −
rps8 · MT156366.1 · 78,134–78,538 bp · −
rpl14 · MT156366.1 · 78,712–79,080 bp · −
rpl16 · MT156366.1 · 79,211–80,486 bp · −
rps3 · MT156366.1 · 80,629–81,291 bp · −
rpl22 · MT156366.1 · 81,276–81,743 bp · −
rps19 · MT156366.1 · 81,813–82,091 bp · −
rpl2 · MT156366.1 · 82,152–83,643 bp · −
rpl23 · MT156366.1 · 83,662–83,943 bp · −
trnI-CAU · MT156366.1 · 84,109–84,182 bp · −
trnL-CAA · MT156366.1 · 91,710–91,790 bp · −
ndhB · MT156366.1 · 92,350–94,503 bp · −
rps7 · MT156366.1 · 94,832–95,299 bp · −
trnN-GUU · MT156366.1 · 106,239–106,310 bp · −
ndhF · MT156366.1 · 107,658–109,889 bp · −
ndhD · MT156366.1 · 112,553–114,094 bp · −
psaC · MT156366.1 · 114,191–114,436 bp · −
ndhE · MT156366.1 · 114,687–114,992 bp · −
ndhG · MT156366.1 · 115,205–115,735 bp · −
ndhI · MT156366.1 · 116,102–116,608 bp · −
ndhA · MT156366.1 · 116,689–118,790 bp · −
ndhH · MT156366.1 · 118,792–119,973 bp · −
rps15 · MT156366.1 · 120,073–120,345 bp · −
ycf1 · MT156366.1 · 120,752–126,277 bp · −
trnR-ACG · MT156366.1 · 127,181–127,254 bp · −
rrn5 · MT156366.1 · 127,498–127,618 bp · −
rrn4.5 · MT156366.1 · 127,874–127,976 bp · −
rrn23 · MT156366.1 · 128,075–130,885 bp · −
trnA-UGC · MT156366.1 · 131,051–131,927 bp · −
trnI-GAU · MT156366.1 · 131,992–133,010 bp · −
rrn16 · MT156366.1 · 133,309–134,799 bp · −
trnV-GAC · MT156366.1 · 135,026–135,097 bp · −
ycf15 · MT156366.1 · 141,468–141,716 bp · −
ycf2 · MT156366.1 · 141,807–148,646 bp · −
psbK · MT156366.1 · 7,128–7,313 bp · +
psbI · MT156366.1 · 7,706–7,816 bp · +
trnG-UCC · MT156366.1 · 8,757–9,506 bp · +
trnR-UCU · MT156366.1 · 9,682–9,753 bp · +
trnC-GCA · MT156366.1 · 27,734–27,804 bp · +
petN · MT156366.1 · 27,960–28,049 bp · +
trnT-GGU · MT156366.1 · 30,461–30,532 bp · +
psbD · MT156366.1 · 31,905–32,966 bp · +
psbC · MT156366.1 · 32,914–34,335 bp · +
psbZ · MT156366.1 · 34,994–35,182 bp · +
trnG-GCC · MT156366.1 · 35,460–35,530 bp · +
trnS-GGA · MT156366.1 · 44,301–44,387 bp · +
trnL-UAA · MT156366.1 · 46,362–46,936 bp · +
trnF-GAA · MT156366.1 · 47,224–47,296 bp · +
trnM-CAU · MT156366.1 · 51,070–51,142 bp · +
rbcL · MT156366.1 · 54,022–55,455 bp · +
accD · MT156366.1 · 56,127–57,554 bp · +
psaI · MT156366.1 · 58,018–58,128 bp · +
ycf4 · MT156366.1 · 58,573–59,127 bp · +
cemA · MT156366.1 · 59,773–60,462 bp · +
petA · MT156366.1 · 60,684–61,646 bp · +
petL · MT156366.1 · 64,223–64,318 bp · +
petG · MT156366.1 · 64,496–64,609 bp · +
psaJ · MT156366.1 · 65,323–65,457 bp · +
rpl33 · MT156366.1 · 65,895–66,095 bp · +
rps18 · MT156366.1 · 66,268–66,573 bp · +
rps12 · MT156366.1 · 136,771–137,564 bp · +
psbB · MT156366.1 · 70,585–72,111 bp · +
psbT · MT156366.1 · 72,302–72,403 bp · +
psbH · MT156366.1 · 72,706–72,927 bp · +
petB · MT156366.1 · 73,061–74,417 bp · +
petD · MT156366.1 · 74,605–75,788 bp · +
ycf2 · MT156366.1 · 84,271–91,110 bp · +
ycf15 · MT156366.1 · 91,201–91,449 bp · +
trnV-GAC · MT156366.1 · 97,820–97,891 bp · +
rrn16 · MT156366.1 · 98,118–99,608 bp · +
trnI-GAU · MT156366.1 · 99,907–100,925 bp · +
trnA-UGC · MT156366.1 · 100,990–101,866 bp · +
rrn23 · MT156366.1 · 102,032–104,842 bp · +
rrn4.5 · MT156366.1 · 104,941–105,043 bp · +
rrn5 · MT156366.1 · 105,299–105,419 bp · +
trnR-ACG · MT156366.1 · 105,663–105,736 bp · +
ycf1 · MT156366.1 · 106,640–107,689 bp · +
rpl32 · MT156366.1 · 110,343–110,513 bp · +
trnL-UAG · MT156366.1 · 111,161–111,240 bp · +
ccsA · MT156366.1 · 111,337–112,314 bp · +
trnN-GUU · MT156366.1 · 126,607–126,678 bp · +
rps7 · MT156366.1 · 137,618–138,085 bp · +
ndhB · MT156366.1 · 138,414–140,567 bp · +
trnL-CAA · MT156366.1 · 141,127–141,207 bp · +
trnI-CAU · MT156366.1 · 148,735–148,808 bp · +
rpl23 · MT156366.1 · 148,974–149,255 bp · +
rpl2 · MT156366.1 · 149,274–150,765 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Salvia iodantha
ANNOTATED PLASTOME
MT156366.1
150,814 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37704 75407 113110 150814 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 2 75 74 Locate
psbA gene − 394 1452 1059 Locate
trnK-UUU gene − 1684 4249 2566 Locate
matK gene − 1988 3511 1524 Locate
rps16 gene − 4815 5913 1099 Locate
trnQ-UUG gene − 6671 6742 72 Locate
psbK gene + 7128 7313 186 Locate
psbI gene + 7706 7816 111 Locate
trnS-GCU gene − 7964 8051 88 Locate
trnG-UCC gene + 8757 9506 750 Locate
trnR-UCU gene + 9682 9753 72 Locate
atpA gene − 9864 11387 1524 Locate
atpF gene − 11485 12744 1260 Locate
atpH gene − 13018 13263 246 Locate
atpI gene − 14277 15020 744 Locate
rps2 gene − 15244 15954 711 Locate
rpoC2 gene − 16159 20346 4188 Locate
rpoC1 gene − 20513 23348 2836 Locate
rpoB gene − 23354 26566 3213 Locate
trnC-GCA gene + 27734 27804 71 Locate
petN gene + 27960 28049 90 Locate
psbM gene − 29032 29136 105 Locate
trnD-GUC gene − 29507 29580 74 Locate
trnY-GUA gene − 29693 29776 84 Locate
trnE-UUC gene − 29847 29919 73 Locate
trnT-GGU gene + 30461 30532 72 Locate
psbD gene + 31905 32966 1062 Locate
psbC gene + 32914 34335 1422 Locate
trnS-UGA gene − 34574 34666 93 Locate
psbZ gene + 34994 35182 189 Locate
trnG-GCC gene + 35460 35530 71 Locate
trnfM-CAU gene − 35686 35759 74 Locate
rps14 gene − 35904 36206 303 Locate
psaB gene − 36329 38533 2205 Locate
psaA gene − 38559 40811 2253 Locate
ycf3 gene − 41542 43475 1934 Locate
trnS-GGA gene + 44301 44387 87 Locate
rps4 gene − 44665 45270 606 Locate
trnT-UGU gene − 45631 45703 73 Locate
trnL-UAA gene + 46362 46936 575 Locate
trnF-GAA gene + 47224 47296 73 Locate
ndhJ gene − 47767 48243 477 Locate
ndhK gene − 48354 49031 678 Locate
ndhC gene − 49083 49445 363 Locate
trnV-UAC gene − 50250 50889 640 Locate
trnM-CAU gene + 51070 51142 73 Locate
atpE gene − 51332 51733 402 Locate
atpB gene − 51730 53226 1497 Locate
rbcL gene + 54022 55455 1434 Locate
accD gene + 56127 57554 1428 Locate
psaI gene + 58018 58128 111 Locate
ycf4 gene + 58573 59127 555 Locate
cemA gene + 59773 60462 690 Locate
petA gene + 60684 61646 963 Locate
psbJ gene − 62640 62762 123 Locate
psbL gene − 62892 63008 117 Locate
psbF gene − 63032 63151 120 Locate
psbE gene − 63166 63417 252 Locate
petL gene + 64223 64318 96 Locate
petG gene + 64496 64609 114 Locate
trnW-CCA gene − 64724 64797 74 Locate
trnP-UGG gene − 64973 65046 74 Locate
psaJ gene + 65323 65457 135 Locate
rpl33 gene + 65895 66095 201 Locate
rps18 gene + 66268 66573 306 Locate
rpl20 gene − 66811 67197 387 Locate
rps12 gene − 67998 68111 114 Locate
clpP gene − 68235 70140 1906 Locate
psbB gene + 70585 72111 1527 Locate
psbT gene + 72302 72403 102 Locate
psbN gene − 72469 72600 132 Locate
psbH gene + 72706 72927 222 Locate
petB gene + 73061 74417 1357 Locate
petD gene + 74605 75788 1184 Locate
rpoA gene − 75965 76972 1008 Locate
rps11 gene − 77042 77458 417 Locate
rpl36 gene − 77570 77683 114 Locate
infA gene − 77779 78012 234 Locate
rps8 gene − 78134 78538 405 Locate
rpl14 gene − 78712 79080 369 Locate
rpl16 gene − 79211 80486 1276 Locate
rps3 gene − 80629 81291 663 Locate
rpl22 gene − 81276 81743 468 Locate
rps19 gene − 81813 82091 279 Locate
rpl2 gene − 82152 83643 1492 Locate
rpl23 gene − 83662 83943 282 Locate
trnI-CAU gene − 84109 84182 74 Locate
ycf2 gene + 84271 91110 6840 Locate
ycf15 gene + 91201 91449 249 Locate
trnL-CAA gene − 91710 91790 81 Locate
ndhB gene − 92350 94503 2154 Locate
rps7 gene − 94832 95299 468 Locate
rps12 gene − 95353 96146 794 Locate
trnV-GAC gene + 97820 97891 72 Locate
rrn16 gene + 98118 99608 1491 Locate
trnI-GAU gene + 99907 100925 1019 Locate
trnA-UGC gene + 100990 101866 877 Locate
rrn23 gene + 102032 104842 2811 Locate
rrn4.5 gene + 104941 105043 103 Locate
rrn5 gene + 105299 105419 121 Locate
trnR-ACG gene + 105663 105736 74 Locate
trnN-GUU gene − 106239 106310 72 Locate
ycf1 gene + 106640 107689 1050 Locate
ndhF gene − 107658 109889 2232 Locate
rpl32 gene + 110343 110513 171 Locate
trnL-UAG gene + 111161 111240 80 Locate
ccsA gene + 111337 112314 978 Locate
ndhD gene − 112553 114094 1542 Locate
psaC gene − 114191 114436 246 Locate
ndhE gene − 114687 114992 306 Locate
ndhG gene − 115205 115735 531 Locate
ndhI gene − 116102 116608 507 Locate
ndhA gene − 116689 118790 2102 Locate
ndhH gene − 118792 119973 1182 Locate
rps15 gene − 120073 120345 273 Locate
ycf1 gene − 120752 126277 5526 Locate
trnN-GUU gene + 126607 126678 72 Locate
trnR-ACG gene − 127181 127254 74 Locate
rrn5 gene − 127498 127618 121 Locate
rrn4.5 gene − 127874 127976 103 Locate
rrn23 gene − 128075 130885 2811 Locate
trnA-UGC gene − 131051 131927 877 Locate
trnI-GAU gene − 131992 133010 1019 Locate
rrn16 gene − 133309 134799 1491 Locate
trnV-GAC gene − 135026 135097 72 Locate
rps12 gene + 136771 137564 794 Locate
rps7 gene + 137618 138085 468 Locate
ndhB gene + 138414 140567 2154 Locate
trnL-CAA gene + 141127 141207 81 Locate
ycf15 gene − 141468 141716 249 Locate
ycf2 gene − 141807 148646 6840 Locate
trnI-CAU gene + 148735 148808 74 Locate
rpl23 gene + 148974 149255 282 Locate
rpl2 gene + 149274 150765 1492 Locate
Status Available
Accession MT156366.1
Length 150,814 bp
GC content 38.0%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 0
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources