Salvia karwinskii chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
trnH-GUG · MT156372.1 · 2–75 bp · −
psbA · MT156372.1 · 394–1,452 bp · −
trnK-UUU · MT156372.1 · 1,684–4,249 bp · −
matK · MT156372.1 · 1,988–3,511 bp · −
rps16 · MT156372.1 · 4,812–5,910 bp · −
trnQ-UUG · MT156372.1 · 6,668–6,739 bp · −
trnS-GCU · MT156372.1 · 7,969–8,056 bp · −
atpA · MT156372.1 · 9,877–11,400 bp · −
atpF · MT156372.1 · 11,498–12,757 bp · −
atpH · MT156372.1 · 13,031–13,276 bp · −
atpI · MT156372.1 · 14,288–15,031 bp · −
rps2 · MT156372.1 · 15,255–15,965 bp · −
rpoC2 · MT156372.1 · 16,169–20,347 bp · −
rpoC1 · MT156372.1 · 20,514–23,325 bp · −
rpoB · MT156372.1 · 23,352–26,564 bp · −
psbM · MT156372.1 · 29,025–29,129 bp · −
trnD-GUC · MT156372.1 · 29,500–29,573 bp · −
trnY-GUA · MT156372.1 · 29,686–29,769 bp · −
trnE-UUC · MT156372.1 · 29,840–29,912 bp · −
trnS-UGA · MT156372.1 · 34,567–34,659 bp · −
trnfM-CAU · MT156372.1 · 35,679–35,752 bp · −
rps14 · MT156372.1 · 35,897–36,199 bp · −
psaB · MT156372.1 · 36,322–38,526 bp · −
psaA · MT156372.1 · 38,552–40,804 bp · −
ycf3 · MT156372.1 · 41,535–43,460 bp · −
rps4 · MT156372.1 · 44,661–45,266 bp · −
trnT-UGU · MT156372.1 · 45,625–45,697 bp · −
ndhJ · MT156372.1 · 47,767–48,243 bp · −
ndhK · MT156372.1 · 48,354–49,031 bp · −
ndhC · MT156372.1 · 49,083–49,445 bp · −
trnV-UAC · MT156372.1 · 50,250–50,894 bp · −
atpE · MT156372.1 · 51,337–51,738 bp · −
atpB · MT156372.1 · 51,735–53,231 bp · −
psbJ · MT156372.1 · 62,662–62,784 bp · −
psbL · MT156372.1 · 62,914–63,030 bp · −
psbF · MT156372.1 · 63,054–63,173 bp · −
psbE · MT156372.1 · 63,188–63,439 bp · −
trnW-CCA · MT156372.1 · 64,849–64,922 bp · −
trnP-UGG · MT156372.1 · 65,097–65,170 bp · −
rpl20 · MT156372.1 · 66,933–67,319 bp · −
rps12 · MT156372.1 · 68,127–68,240 bp · −
rps12 · MT156372.1 · 95,492–96,285 bp · −
clpP · MT156372.1 · 68,364–70,271 bp · −
psbN · MT156372.1 · 72,600–72,731 bp · −
rpoA · MT156372.1 · 76,101–77,108 bp · −
rps11 · MT156372.1 · 77,178–77,594 bp · −
rpl36 · MT156372.1 · 77,706–77,819 bp · −
infA · MT156372.1 · 77,915–78,148 bp · −
rps8 · MT156372.1 · 78,271–78,675 bp · −
rpl14 · MT156372.1 · 78,851–79,219 bp · −
rpl16 · MT156372.1 · 79,350–80,624 bp · −
rps3 · MT156372.1 · 80,767–81,429 bp · −
rpl22 · MT156372.1 · 81,414–81,881 bp · −
rps19 · MT156372.1 · 81,951–82,229 bp · −
rpl2 · MT156372.1 · 82,291–83,782 bp · −
rpl23 · MT156372.1 · 83,801–84,082 bp · −
trnI-CAU · MT156372.1 · 84,248–84,321 bp · −
trnL-CAA · MT156372.1 · 91,849–91,929 bp · −
ndhB · MT156372.1 · 92,489–94,642 bp · −
rps7 · MT156372.1 · 94,971–95,438 bp · −
trnN-GUU · MT156372.1 · 106,337–106,408 bp · −
ndhF · MT156372.1 · 107,756–109,987 bp · −
ndhD · MT156372.1 · 112,654–114,195 bp · −
psaC · MT156372.1 · 114,291–114,536 bp · −
ndhE · MT156372.1 · 114,787–115,092 bp · −
ndhG · MT156372.1 · 115,305–115,835 bp · −
ndhI · MT156372.1 · 116,201–116,707 bp · −
ndhA · MT156372.1 · 116,788–118,889 bp · −
ndhH · MT156372.1 · 118,891–120,072 bp · −
rps15 · MT156372.1 · 120,172–120,444 bp · −
ycf1 · MT156372.1 · 120,850–126,375 bp · −
trnR-ACG · MT156372.1 · 127,279–127,352 bp · −
rrn5 · MT156372.1 · 127,596–127,716 bp · −
rrn4.5 · MT156372.1 · 127,972–128,074 bp · −
rrn23 · MT156372.1 · 128,173–130,983 bp · −
trnA-UGC · MT156372.1 · 131,149–132,025 bp · −
trnI-GAU · MT156372.1 · 132,090–133,108 bp · −
rrn16 · MT156372.1 · 133,407–134,897 bp · −
trnV-GAC · MT156372.1 · 135,124–135,195 bp · −
ycf15 · MT156372.1 · 141,525–141,773 bp · −
ycf2 · MT156372.1 · 141,864–148,703 bp · −
psbK · MT156372.1 · 7,129–7,314 bp · +
psbI · MT156372.1 · 7,708–7,818 bp · +
trnG-UCC · MT156372.1 · 8,762–9,522 bp · +
trnR-UCU · MT156372.1 · 9,699–9,770 bp · +
trnC-GCA · MT156372.1 · 27,727–27,797 bp · +
petN · MT156372.1 · 27,953–28,042 bp · +
trnT-GGU · MT156372.1 · 30,454–30,525 bp · +
psbD · MT156372.1 · 31,898–32,959 bp · +
psbC · MT156372.1 · 32,907–34,328 bp · +
psbZ · MT156372.1 · 34,987–35,175 bp · +
trnG-GCC · MT156372.1 · 35,453–35,523 bp · +
trnS-GGA · MT156372.1 · 44,297–44,383 bp · +
trnL-UAA · MT156372.1 · 46,356–46,930 bp · +
trnF-GAA · MT156372.1 · 47,218–47,290 bp · +
trnM-CAU · MT156372.1 · 51,075–51,147 bp · +
rbcL · MT156372.1 · 54,033–55,466 bp · +
accD · MT156372.1 · 56,138–57,565 bp · +
psaI · MT156372.1 · 58,029–58,139 bp · +
ycf4 · MT156372.1 · 58,584–59,138 bp · +
cemA · MT156372.1 · 59,780–60,469 bp · +
petA · MT156372.1 · 60,691–61,653 bp · +
petL · MT156372.1 · 64,347–64,442 bp · +
petG · MT156372.1 · 64,621–64,734 bp · +
psaJ · MT156372.1 · 65,448–65,582 bp · +
rpl33 · MT156372.1 · 66,021–66,221 bp · +
rps18 · MT156372.1 · 66,394–66,699 bp · +
rps12 · MT156372.1 · 136,828–137,621 bp · +
psbB · MT156372.1 · 70,716–72,242 bp · +
psbT · MT156372.1 · 72,433–72,534 bp · +
psbH · MT156372.1 · 72,837–73,058 bp · +
petB · MT156372.1 · 73,192–74,553 bp · +
petD · MT156372.1 · 74,741–75,924 bp · +
ycf2 · MT156372.1 · 84,410–91,249 bp · +
ycf15 · MT156372.1 · 91,340–91,588 bp · +
trnV-GAC · MT156372.1 · 97,918–97,989 bp · +
rrn16 · MT156372.1 · 98,216–99,706 bp · +
trnI-GAU · MT156372.1 · 100,005–101,023 bp · +
trnA-UGC · MT156372.1 · 101,088–101,964 bp · +
rrn23 · MT156372.1 · 102,130–104,940 bp · +
rrn4.5 · MT156372.1 · 105,039–105,141 bp · +
rrn5 · MT156372.1 · 105,397–105,517 bp · +
trnR-ACG · MT156372.1 · 105,761–105,834 bp · +
ycf1 · MT156372.1 · 106,738–107,787 bp · +
rpl32 · MT156372.1 · 110,442–110,612 bp · +
trnL-UAG · MT156372.1 · 111,262–111,341 bp · +
ccsA · MT156372.1 · 111,438–112,415 bp · +
trnN-GUU · MT156372.1 · 126,705–126,776 bp · +
rps7 · MT156372.1 · 137,675–138,142 bp · +
ndhB · MT156372.1 · 138,471–140,624 bp · +
trnL-CAA · MT156372.1 · 141,184–141,264 bp · +
trnI-CAU · MT156372.1 · 148,792–148,865 bp · +
rpl23 · MT156372.1 · 149,031–149,312 bp · +
rpl2 · MT156372.1 · 149,331–150,822 bp · +
rps19 · MT156372.1 · 150,884–150,907 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Salvia karwinskii
ANNOTATED PLASTOME
MT156372.1
150,907 bp · 134 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37727 75454 113180 150907 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2 rps19
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
135 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 2 75 74 Locate
psbA gene − 394 1452 1059 Locate
trnK-UUU gene − 1684 4249 2566 Locate
matK gene − 1988 3511 1524 Locate
rps16 gene − 4812 5910 1099 Locate
trnQ-UUG gene − 6668 6739 72 Locate
psbK gene + 7129 7314 186 Locate
psbI gene + 7708 7818 111 Locate
trnS-GCU gene − 7969 8056 88 Locate
trnG-UCC gene + 8762 9522 761 Locate
trnR-UCU gene + 9699 9770 72 Locate
atpA gene − 9877 11400 1524 Locate
atpF gene − 11498 12757 1260 Locate
atpH gene − 13031 13276 246 Locate
atpI gene − 14288 15031 744 Locate
rps2 gene − 15255 15965 711 Locate
rpoC2 gene − 16169 20347 4179 Locate
rpoC1 gene − 20514 23325 2812 Locate
rpoB gene − 23352 26564 3213 Locate
trnC-GCA gene + 27727 27797 71 Locate
petN gene + 27953 28042 90 Locate
psbM gene − 29025 29129 105 Locate
trnD-GUC gene − 29500 29573 74 Locate
trnY-GUA gene − 29686 29769 84 Locate
trnE-UUC gene − 29840 29912 73 Locate
trnT-GGU gene + 30454 30525 72 Locate
psbD gene + 31898 32959 1062 Locate
psbC gene + 32907 34328 1422 Locate
trnS-UGA gene − 34567 34659 93 Locate
psbZ gene + 34987 35175 189 Locate
trnG-GCC gene + 35453 35523 71 Locate
trnfM-CAU gene − 35679 35752 74 Locate
rps14 gene − 35897 36199 303 Locate
psaB gene − 36322 38526 2205 Locate
psaA gene − 38552 40804 2253 Locate
ycf3 gene − 41535 43460 1926 Locate
trnS-GGA gene + 44297 44383 87 Locate
rps4 gene − 44661 45266 606 Locate
trnT-UGU gene − 45625 45697 73 Locate
trnL-UAA gene + 46356 46930 575 Locate
trnF-GAA gene + 47218 47290 73 Locate
ndhJ gene − 47767 48243 477 Locate
ndhK gene − 48354 49031 678 Locate
ndhC gene − 49083 49445 363 Locate
trnV-UAC gene − 50250 50894 645 Locate
trnM-CAU gene + 51075 51147 73 Locate
atpE gene − 51337 51738 402 Locate
atpB gene − 51735 53231 1497 Locate
rbcL gene + 54033 55466 1434 Locate
accD gene + 56138 57565 1428 Locate
psaI gene + 58029 58139 111 Locate
ycf4 gene + 58584 59138 555 Locate
cemA gene + 59780 60469 690 Locate
petA gene + 60691 61653 963 Locate
psbJ gene − 62662 62784 123 Locate
psbL gene − 62914 63030 117 Locate
psbF gene − 63054 63173 120 Locate
psbE gene − 63188 63439 252 Locate
petL gene + 64347 64442 96 Locate
petG gene + 64621 64734 114 Locate
trnW-CCA gene − 64849 64922 74 Locate
trnP-UGG gene − 65097 65170 74 Locate
psaJ gene + 65448 65582 135 Locate
rpl33 gene + 66021 66221 201 Locate
rps18 gene + 66394 66699 306 Locate
rpl20 gene − 66933 67319 387 Locate
rps12 gene − 68127 68240 114 Locate
clpP gene − 68364 70271 1908 Locate
psbB gene + 70716 72242 1527 Locate
psbT gene + 72433 72534 102 Locate
psbN gene − 72600 72731 132 Locate
psbH gene + 72837 73058 222 Locate
petB gene + 73192 74553 1362 Locate
petD gene + 74741 75924 1184 Locate
rpoA gene − 76101 77108 1008 Locate
rps11 gene − 77178 77594 417 Locate
rpl36 gene − 77706 77819 114 Locate
infA gene − 77915 78148 234 Locate
rps8 gene − 78271 78675 405 Locate
rpl14 gene − 78851 79219 369 Locate
rpl16 gene − 79350 80624 1275 Locate
rps3 gene − 80767 81429 663 Locate
rpl22 gene − 81414 81881 468 Locate
rps19 gene − 81951 82229 279 Locate
rpl2 gene − 82291 83782 1492 Locate
rpl23 gene − 83801 84082 282 Locate
trnI-CAU gene − 84248 84321 74 Locate
ycf2 gene + 84410 91249 6840 Locate
ycf15 gene + 91340 91588 249 Locate
trnL-CAA gene − 91849 91929 81 Locate
ndhB gene − 92489 94642 2154 Locate
rps7 gene − 94971 95438 468 Locate
rps12 gene − 95492 96285 794 Locate
trnV-GAC gene + 97918 97989 72 Locate
rrn16 gene + 98216 99706 1491 Locate
trnI-GAU gene + 100005 101023 1019 Locate
trnA-UGC gene + 101088 101964 877 Locate
rrn23 gene + 102130 104940 2811 Locate
rrn4.5 gene + 105039 105141 103 Locate
rrn5 gene + 105397 105517 121 Locate
trnR-ACG gene + 105761 105834 74 Locate
trnN-GUU gene − 106337 106408 72 Locate
ycf1 gene + 106738 107787 1050 Locate
ndhF gene − 107756 109987 2232 Locate
rpl32 gene + 110442 110612 171 Locate
trnL-UAG gene + 111262 111341 80 Locate
ccsA gene + 111438 112415 978 Locate
ndhD gene − 112654 114195 1542 Locate
psaC gene − 114291 114536 246 Locate
ndhE gene − 114787 115092 306 Locate
ndhG gene − 115305 115835 531 Locate
ndhI gene − 116201 116707 507 Locate
ndhA gene − 116788 118889 2102 Locate
ndhH gene − 118891 120072 1182 Locate
rps15 gene − 120172 120444 273 Locate
ycf1 gene − 120850 126375 5526 Locate
trnN-GUU gene + 126705 126776 72 Locate
trnR-ACG gene − 127279 127352 74 Locate
rrn5 gene − 127596 127716 121 Locate
rrn4.5 gene − 127972 128074 103 Locate
rrn23 gene − 128173 130983 2811 Locate
trnA-UGC gene − 131149 132025 877 Locate
trnI-GAU gene − 132090 133108 1019 Locate
rrn16 gene − 133407 134897 1491 Locate
trnV-GAC gene − 135124 135195 72 Locate
rps12 gene + 136828 137621 794 Locate
rps7 gene + 137675 138142 468 Locate
ndhB gene + 138471 140624 2154 Locate
trnL-CAA gene + 141184 141264 81 Locate
ycf15 gene − 141525 141773 249 Locate
ycf2 gene − 141864 148703 6840 Locate
trnI-CAU gene + 148792 148865 74 Locate
rpl23 gene + 149031 149312 282 Locate
rpl2 gene + 149331 150822 1492 Locate
rps19 gene + 150884 150907 24 Locate
Status Available
Accession MT156372.1
Length 150,907 bp
GC content 38.0%
Annotated genes 134
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 27 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 0
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources