LamiOmicsDB Lamiaceae Multi-Omics Database
v1 808 species · 3 phylogenies · 6,313 gene sequences

Coordinate-aware organelle record

Salvia lyrata chloroplast dna

Available NC_084048.1 151,228 bp 130 genes
DNA resources Accession record
Salvia lyrata chloroplast Biopython GenomeDiagram 1.79; GenBank local location segments. LSC IR SSC IR trnH-GUG · NC_084048.1 · 1,793–1,866 bp · − psbA · NC_084048.1 · 2,140–3,198 bp · − trnK-UUU · NC_084048.1 · 3,430–6,013 bp · − matK · NC_084048.1 · 3,749–5,278 bp · − rps16 · NC_084048.1 · 6,577–7,670 bp · − trnQ-UUG · NC_084048.1 · 8,222–8,293 bp · − trnS-GCU · NC_084048.1 · 9,522–9,609 bp · − atpA · NC_084048.1 · 11,443–12,966 bp · − atpF · NC_084048.1 · 13,064–14,312 bp · − atpH · NC_084048.1 · 14,592–14,837 bp · − atpI · NC_084048.1 · 15,874–16,617 bp · − rps2 · NC_084048.1 · 16,782–17,492 bp · − rpoC2 · NC_084048.1 · 17,703–21,890 bp · − rpoC1 · NC_084048.1 · 22,055–24,871 bp · − rpoB · NC_084048.1 · 24,898–28,110 bp · − psbM · NC_084048.1 · 30,622–30,726 bp · − trnD-GUC · NC_084048.1 · 31,244–31,317 bp · − trnY-GUA · NC_084048.1 · 31,432–31,515 bp · − trnE-UUC · NC_084048.1 · 31,586–31,658 bp · − trnS-UGA · NC_084048.1 · 36,338–36,430 bp · − trnfM-CAU · NC_084048.1 · 37,477–37,550 bp · − rps14 · NC_084048.1 · 37,695–37,997 bp · − psaB · NC_084048.1 · 38,120–40,324 bp · − psaA · NC_084048.1 · 40,350–42,602 bp · − ycf3 · NC_084048.1 · 43,401–45,361 bp · − rps4 · NC_084048.1 · 46,550–47,155 bp · − trnT-UGU · NC_084048.1 · 47,504–47,576 bp · − ndhJ · NC_084048.1 · 49,848–50,324 bp · − ndhK · NC_084048.1 · 50,435–51,112 bp · − ndhC · NC_084048.1 · 51,164–51,526 bp · − trnV-UAC · NC_084048.1 · 52,476–53,125 bp · − atpE · NC_084048.1 · 53,589–53,990 bp · − atpB · NC_084048.1 · 53,987–55,483 bp · − psbJ · NC_084048.1 · 64,997–65,119 bp · − psbL · NC_084048.1 · 65,249–65,365 bp · − psbF · NC_084048.1 · 65,389–65,508 bp · − psbE · NC_084048.1 · 65,523–65,774 bp · − trnW-CCA · NC_084048.1 · 67,176–67,249 bp · − trnP-UGG · NC_084048.1 · 67,425–67,498 bp · − rpl20 · NC_084048.1 · 69,262–69,648 bp · − rps12 · NC_084048.1 · 70,444–70,557 bp · − rps12 · NC_084048.1 · 97,807–98,600 bp · − clpP · NC_084048.1 · 70,680–72,569 bp · − psbN · NC_084048.1 · 74,901–75,032 bp · − rpoA · NC_084048.1 · 78,420–79,427 bp · − rps11 · NC_084048.1 · 79,498–79,914 bp · − rpl36 · NC_084048.1 · 80,024–80,137 bp · − infA · NC_084048.1 · 80,233–80,466 bp · − rps8 · NC_084048.1 · 80,586–80,990 bp · − rpl14 · NC_084048.1 · 81,167–81,535 bp · − rpl16 · NC_084048.1 · 81,664–82,937 bp · − rps3 · NC_084048.1 · 83,088–83,750 bp · − rpl22 · NC_084048.1 · 83,735–84,202 bp · − rps19 · NC_084048.1 · 84,280–84,558 bp · − rpl2 · NC_084048.1 · 84,618–86,105 bp · − rpl23 · NC_084048.1 · 86,124–86,405 bp · − trnI-CAU · NC_084048.1 · 86,571–86,644 bp · − trnL-CAA · NC_084048.1 · 94,172–94,252 bp · − ndhB · NC_084048.1 · 94,804–96,957 bp · − rps7 · NC_084048.1 · 97,286–97,753 bp · − trnN-GUU · NC_084048.1 · 108,647–108,718 bp · − ndhF · NC_084048.1 · 110,072–112,309 bp · − ndhD · NC_084048.1 · 115,077–116,618 bp · − psaC · NC_084048.1 · 116,715–116,960 bp · − ndhE · NC_084048.1 · 117,211–117,513 bp · − ndhG · NC_084048.1 · 117,731–118,261 bp · − ndhI · NC_084048.1 · 118,640–119,146 bp · − ndhA · NC_084048.1 · 119,227–121,331 bp · − ndhH · NC_084048.1 · 121,333–122,568 bp · − rps15 · NC_084048.1 · 122,614–122,886 bp · − ycf1 · NC_084048.1 · 123,269–128,791 bp · − trnR-ACG · NC_084048.1 · 129,706–129,779 bp · − rrn5 · NC_084048.1 · 130,029–130,149 bp · − rrn4.5 · NC_084048.1 · 130,399–130,501 bp · − rrn23 · NC_084048.1 · 130,602–133,410 bp · − trnA-UGC · NC_084048.1 · 133,577–134,454 bp · − trnI-GAU · NC_084048.1 · 134,519–135,538 bp · − rrn16 · NC_084048.1 · 135,837–137,327 bp · − trnV-GAC · NC_084048.1 · 137,554–137,625 bp · − ycf15 · NC_084048.1 · 143,928–144,176 bp · − ycf2 · NC_084048.1 · 144,267–151,106 bp · − psbK · NC_084048.1 · 8,661–8,840 bp · + psbI · NC_084048.1 · 9,245–9,355 bp · + trnG-UCC · NC_084048.1 · 10,329–11,084 bp · + trnR-UCU · NC_084048.1 · 11,267–11,338 bp · + trnC-GCA · NC_084048.1 · 29,289–29,359 bp · + petN · NC_084048.1 · 29,523–29,612 bp · + trnT-GGU · NC_084048.1 · 32,220–32,291 bp · + psbD · NC_084048.1 · 33,662–34,723 bp · + psbC · NC_084048.1 · 34,671–36,092 bp · + psbZ · NC_084048.1 · 36,766–36,954 bp · + trnG-GCC · NC_084048.1 · 37,232–37,302 bp · + trnS-GGA · NC_084048.1 · 46,201–46,287 bp · + trnL-UAA · NC_084048.1 · 48,268–48,842 bp · + trnF-GAA · NC_084048.1 · 49,126–49,198 bp · + trnM-CAU · NC_084048.1 · 53,306–53,378 bp · + rbcL · NC_084048.1 · 56,261–57,715 bp · + accD · NC_084048.1 · 58,351–59,886 bp · + psaI · NC_084048.1 · 60,370–60,480 bp · + ycf4 · NC_084048.1 · 60,924–61,478 bp · + cemA · NC_084048.1 · 62,141–62,830 bp · + petA · NC_084048.1 · 63,038–64,000 bp · + petL · NC_084048.1 · 66,672–66,767 bp · + petG · NC_084048.1 · 66,947–67,060 bp · + psaJ · NC_084048.1 · 67,719–67,907 bp · + rpl33 · NC_084048.1 · 68,353–68,553 bp · + rps18 · NC_084048.1 · 68,724–69,029 bp · + rps12 · NC_084048.1 · 139,239–140,032 bp · + psbB · NC_084048.1 · 73,023–74,549 bp · + psbT · NC_084048.1 · 74,733–74,840 bp · + psbH · NC_084048.1 · 75,138–75,359 bp · + petB · NC_084048.1 · 75,485–76,863 bp · + petD · NC_084048.1 · 77,053–78,243 bp · + ycf2 · NC_084048.1 · 86,733–93,572 bp · + ycf15 · NC_084048.1 · 93,663–93,911 bp · + trnV-GAC · NC_084048.1 · 100,214–100,285 bp · + rrn16 · NC_084048.1 · 100,512–102,002 bp · + trnI-GAU · NC_084048.1 · 102,301–103,320 bp · + trnA-UGC · NC_084048.1 · 103,385–104,262 bp · + rrn23 · NC_084048.1 · 104,429–107,237 bp · + rrn4.5 · NC_084048.1 · 107,338–107,440 bp · + rrn5 · NC_084048.1 · 107,690–107,810 bp · + trnR-ACG · NC_084048.1 · 108,060–108,133 bp · + ycf1 · NC_084048.1 · 109,048–110,107 bp · + rpl32 · NC_084048.1 · 112,769–112,966 bp · + trnL-UAG · NC_084048.1 · 113,693–113,772 bp · + ccsA · NC_084048.1 · 113,877–114,848 bp · + trnN-GUU · NC_084048.1 · 129,121–129,192 bp · + rps7 · NC_084048.1 · 140,086–140,553 bp · + ndhB · NC_084048.1 · 140,882–143,035 bp · + trnL-CAA · NC_084048.1 · 143,587–143,667 bp · + 0 kb 13 kb 26 kb 39 kb 52 kb 65 kb 78 kb 91 kb 104 kb 117 kb 130 kb 143 kb Salvia lyrata ANNOTATED PLASTOME NC_084048.1 151,228 bp · 130 genes Gene function Transfer RNA Photosystem II Other Ribosomal protein ATP synthase RNA polymerase Cytochrome Photosystem I NADH dehydrogenase Ribosomal RNA

Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram.

Gene-position browser

Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.

131 local segments
GeneTypeGroupStrandStartEndLength
trnH-GUGgenetranslation-rna−1793186674
psbAgenephotosystem-ii−214031981059
trnK-UUUgenetranslation-rna−343060132584
matKgeneother−374952781530
rps16generibosomal-protein−657776701094
trnQ-UUGgenetranslation-rna−8222829372
psbKgenephotosystem-ii+86618840180
psbIgenephotosystem-ii+92459355111
trnS-GCUgenetranslation-rna−9522960988
trnG-UCCgenetranslation-rna+1032911084756
trnR-UCUgenetranslation-rna+112671133872
atpAgeneatp-synthase−11443129661524
atpFgeneatp-synthase−13064143121249
atpHgeneatp-synthase−1459214837246
atpIgeneatp-synthase−1587416617744
rps2generibosomal-protein−1678217492711
rpoC2generna-polymerase−17703218904188
rpoC1generna-polymerase−22055248712817
rpoBgenerna-polymerase−24898281103213
trnC-GCAgenetranslation-rna+292892935971
petNgenecytochrome+295232961290
psbMgenephotosystem-ii−3062230726105
trnD-GUCgenetranslation-rna−312443131774
trnY-GUAgenetranslation-rna−314323151584
trnE-UUCgenetranslation-rna−315863165873
trnT-GGUgenetranslation-rna+322203229172
psbDgenephotosystem-ii+33662347231062
psbCgenephotosystem-ii+34671360921422
trnS-UGAgenetranslation-rna−363383643093
psbZgenephotosystem-ii+3676636954189
trnG-GCCgenetranslation-rna+372323730271
trnfM-CAUgenetranslation-rna−374773755074
rps14generibosomal-protein−3769537997303
psaBgenephotosystem-i−38120403242205
psaAgenephotosystem-i−40350426022253
ycf3geneother−43401453611961
trnS-GGAgenetranslation-rna+462014628787
rps4generibosomal-protein−4655047155606
trnT-UGUgenetranslation-rna−475044757673
trnL-UAAgenetranslation-rna+4826848842575
trnF-GAAgenetranslation-rna+491264919873
ndhJgenenad-dehydrogenase−4984850324477
ndhKgenenad-dehydrogenase−5043551112678
ndhCgenenad-dehydrogenase−5116451526363
trnV-UACgenetranslation-rna−5247653125650
trnM-CAUgenetranslation-rna+533065337873
atpEgeneatp-synthase−5358953990402
atpBgeneatp-synthase−53987554831497
rbcLgeneother+56261577151455
accDgeneother+58351598861536
psaIgenephotosystem-i+6037060480111
ycf4geneother+6092461478555
cemAgeneother+6214162830690
petAgenecytochrome+6303864000963
psbJgenephotosystem-ii−6499765119123
psbLgenephotosystem-ii−6524965365117
psbFgenephotosystem-ii−6538965508120
psbEgenephotosystem-ii−6552365774252
petLgenecytochrome+666726676796
petGgenecytochrome+6694767060114
trnW-CCAgenetranslation-rna−671766724974
trnP-UGGgenetranslation-rna−674256749874
psaJgenephotosystem-i+6771967907189
rpl33generibosomal-protein+6835368553201
rps18generibosomal-protein+6872469029306
rpl20generibosomal-protein−6926269648387
rps12generibosomal-protein−7044470557114
clpPgeneother−70680725691890
psbBgenephotosystem-ii+73023745491527
psbTgenephotosystem-ii+7473374840108
psbNgenephotosystem-ii−7490175032132
psbHgenephotosystem-ii+7513875359222
petBgenecytochrome+75485768631379
petDgenecytochrome+77053782431191
rpoAgenerna-polymerase−78420794271008
rps11generibosomal-protein−7949879914417
rpl36generibosomal-protein−8002480137114
infAgeneother−8023380466234
rps8generibosomal-protein−8058680990405
rpl14generibosomal-protein−8116781535369
rpl16generibosomal-protein−81664829371274
rps3generibosomal-protein−8308883750663
rpl22generibosomal-protein−8373584202468
rps19generibosomal-protein−8428084558279
rpl2generibosomal-protein−84618861051488
rpl23generibosomal-protein−8612486405282
trnI-CAUgenetranslation-rna−865718664474
ycf2geneother+86733935726840
ycf15geneother+9366393911249
trnL-CAAgenetranslation-rna−941729425281
ndhBgenenad-dehydrogenase−94804969572154
rps7generibosomal-protein−9728697753468
rps12generibosomal-protein−9780798600794
trnV-GACgenetranslation-rna+10021410028572
rrn16generibosomal-rna+1005121020021491
trnI-GAUgenetranslation-rna+1023011033201020
trnA-UGCgenetranslation-rna+103385104262878
rrn23generibosomal-rna+1044291072372809
rrn4.5generibosomal-rna+107338107440103
rrn5generibosomal-rna+107690107810121
trnR-ACGgenetranslation-rna+10806010813374
trnN-GUUgenetranslation-rna−10864710871872
ycf1geneother+1090481101071060
ndhFgenenad-dehydrogenase−1100721123092238
rpl32generibosomal-protein+112769112966198
trnL-UAGgenetranslation-rna+11369311377280
ccsAgeneother+113877114848972
ndhDgenenad-dehydrogenase−1150771166181542
psaCgenephotosystem-i−116715116960246
ndhEgenenad-dehydrogenase−117211117513303
ndhGgenenad-dehydrogenase−117731118261531
ndhIgenenad-dehydrogenase−118640119146507
ndhAgenenad-dehydrogenase−1192271213312105
ndhHgenenad-dehydrogenase−1213331225681236
rps15generibosomal-protein−122614122886273
ycf1geneother−1232691287915523
trnN-GUUgenetranslation-rna+12912112919272
trnR-ACGgenetranslation-rna−12970612977974
rrn5generibosomal-rna−130029130149121
rrn4.5generibosomal-rna−130399130501103
rrn23generibosomal-rna−1306021334102809
trnA-UGCgenetranslation-rna−133577134454878
trnI-GAUgenetranslation-rna−1345191355381020
rrn16generibosomal-rna−1358371373271491
trnV-GACgenetranslation-rna−13755413762572
rps12generibosomal-protein+139239140032794
rps7generibosomal-protein+140086140553468
ndhBgenenad-dehydrogenase+1408821430352154
trnL-CAAgenetranslation-rna+14358714366781
ycf15geneother−143928144176249
ycf2geneother−1442671511066840

Sources and evidence boundary

Accessions, release scope and coordinate evidence remain visible beside the visualization.

Full species sources
Chloroplast DNANC_084048.1DNA · accDNC_084048DNA · atpBNC_084048DNA · matKNC_084048DNA · ndhFNC_084048DNA · psbANC_084048DNA · rbcLNC_084048DNA · rps12NC_084048DNA · ycf1NC_084048