Salvia madrensis chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
trnH-GUG · MT156373.1 · 1–74 bp · −
psbA · MT156373.1 · 394–1,452 bp · −
trnK-UUU · MT156373.1 · 1,684–4,249 bp · −
matK · MT156373.1 · 1,988–3,511 bp · −
rps16 · MT156373.1 · 4,820–5,918 bp · −
trnQ-UUG · MT156373.1 · 6,674–6,745 bp · −
trnS-GCU · MT156373.1 · 7,973–8,060 bp · −
atpA · MT156373.1 · 9,885–11,408 bp · −
atpF · MT156373.1 · 11,502–12,763 bp · −
atpH · MT156373.1 · 13,037–13,282 bp · −
atpI · MT156373.1 · 14,294–15,037 bp · −
rps2 · MT156373.1 · 15,261–15,971 bp · −
rpoC2 · MT156373.1 · 16,175–20,362 bp · −
rpoC1 · MT156373.1 · 20,530–23,362 bp · −
rpoB · MT156373.1 · 23,368–26,580 bp · −
psbM · MT156373.1 · 29,059–29,163 bp · −
trnD-GUC · MT156373.1 · 29,534–29,607 bp · −
trnY-GUA · MT156373.1 · 29,725–29,808 bp · −
trnE-UUC · MT156373.1 · 29,879–29,951 bp · −
trnS-UGA · MT156373.1 · 34,613–34,705 bp · −
trnfM-CAU · MT156373.1 · 35,726–35,799 bp · −
rps14 · MT156373.1 · 35,944–36,246 bp · −
psaB · MT156373.1 · 36,369–38,573 bp · −
psaA · MT156373.1 · 38,599–40,851 bp · −
ycf3 · MT156373.1 · 41,582–43,522 bp · −
rps4 · MT156373.1 · 44,719–45,324 bp · −
trnT-UGU · MT156373.1 · 45,684–45,756 bp · −
ndhJ · MT156373.1 · 47,851–48,327 bp · −
ndhK · MT156373.1 · 48,438–49,115 bp · −
ndhC · MT156373.1 · 49,167–49,529 bp · −
trnV-UAC · MT156373.1 · 50,372–51,017 bp · −
atpE · MT156373.1 · 51,460–51,861 bp · −
atpB · MT156373.1 · 51,858–53,354 bp · −
psbJ · MT156373.1 · 62,825–62,947 bp · −
psbL · MT156373.1 · 63,077–63,193 bp · −
psbF · MT156373.1 · 63,217–63,336 bp · −
psbE · MT156373.1 · 63,351–63,602 bp · −
trnW-CCA · MT156373.1 · 65,005–65,078 bp · −
trnP-UGG · MT156373.1 · 65,253–65,326 bp · −
rpl20 · MT156373.1 · 67,089–67,475 bp · −
rps12 · MT156373.1 · 68,283–68,396 bp · −
rps12 · MT156373.1 · 95,642–96,435 bp · −
clpP · MT156373.1 · 68,520–70,429 bp · −
psbN · MT156373.1 · 72,749–72,880 bp · −
rpoA · MT156373.1 · 76,253–77,260 bp · −
rps11 · MT156373.1 · 77,330–77,746 bp · −
rpl36 · MT156373.1 · 77,858–77,971 bp · −
infA · MT156373.1 · 78,067–78,300 bp · −
rps8 · MT156373.1 · 78,423–78,827 bp · −
rpl14 · MT156373.1 · 79,001–79,369 bp · −
rpl16 · MT156373.1 · 79,500–80,775 bp · −
rps3 · MT156373.1 · 80,918–81,580 bp · −
rpl22 · MT156373.1 · 81,565–82,032 bp · −
rps19 · MT156373.1 · 82,102–82,380 bp · −
rpl2 · MT156373.1 · 82,441–83,932 bp · −
rpl23 · MT156373.1 · 83,951–84,232 bp · −
trnI-CAU · MT156373.1 · 84,398–84,471 bp · −
trnL-CAA · MT156373.1 · 91,999–92,079 bp · −
ndhB · MT156373.1 · 92,639–94,792 bp · −
rps7 · MT156373.1 · 95,121–95,588 bp · −
trnN-GUU · MT156373.1 · 106,510–106,581 bp · −
ndhF · MT156373.1 · 107,929–110,160 bp · −
ndhD · MT156373.1 · 112,822–114,363 bp · −
psaC · MT156373.1 · 114,455–114,700 bp · −
ndhE · MT156373.1 · 114,951–115,256 bp · −
ndhG · MT156373.1 · 115,469–115,999 bp · −
ndhI · MT156373.1 · 116,362–116,868 bp · −
ndhA · MT156373.1 · 116,949–119,049 bp · −
ndhH · MT156373.1 · 119,051–120,232 bp · −
rps15 · MT156373.1 · 120,332–120,604 bp · −
ycf1 · MT156373.1 · 121,012–126,537 bp · −
trnR-ACG · MT156373.1 · 127,441–127,514 bp · −
rrn5 · MT156373.1 · 127,758–127,878 bp · −
rrn4.5 · MT156373.1 · 128,134–128,236 bp · −
rrn23 · MT156373.1 · 128,335–131,145 bp · −
trnA-UGC · MT156373.1 · 131,311–132,187 bp · −
trnI-GAU · MT156373.1 · 132,252–133,270 bp · −
rrn16 · MT156373.1 · 133,569–135,059 bp · −
trnV-GAC · MT156373.1 · 135,286–135,357 bp · −
ycf15 · MT156373.1 · 141,710–141,958 bp · −
ycf2 · MT156373.1 · 142,049–148,888 bp · −
psbK · MT156373.1 · 7,131–7,316 bp · +
psbI · MT156373.1 · 7,712–7,822 bp · +
trnG-UCC · MT156373.1 · 8,766–9,526 bp · +
trnR-UCU · MT156373.1 · 9,703–9,774 bp · +
trnC-GCA · MT156373.1 · 27,743–27,813 bp · +
petN · MT156373.1 · 27,969–28,058 bp · +
trnT-GGU · MT156373.1 · 30,500–30,571 bp · +
psbD · MT156373.1 · 31,944–33,005 bp · +
psbC · MT156373.1 · 32,953–34,374 bp · +
psbZ · MT156373.1 · 35,033–35,221 bp · +
trnG-GCC · MT156373.1 · 35,499–35,569 bp · +
trnS-GGA · MT156373.1 · 44,355–44,441 bp · +
trnL-UAA · MT156373.1 · 46,415–46,989 bp · +
trnF-GAA · MT156373.1 · 47,301–47,373 bp · +
trnM-CAU · MT156373.1 · 51,198–51,270 bp · +
rbcL · MT156373.1 · 54,155–55,588 bp · +
accD · MT156373.1 · 56,260–57,729 bp · +
psaI · MT156373.1 · 58,193–58,303 bp · +
ycf4 · MT156373.1 · 58,747–59,301 bp · +
cemA · MT156373.1 · 59,943–60,632 bp · +
petA · MT156373.1 · 60,854–61,816 bp · +
petL · MT156373.1 · 64,503–64,598 bp · +
petG · MT156373.1 · 64,777–64,890 bp · +
psaJ · MT156373.1 · 65,605–65,739 bp · +
rpl33 · MT156373.1 · 66,178–66,378 bp · +
rps18 · MT156373.1 · 66,551–66,856 bp · +
rps12 · MT156373.1 · 137,013–137,806 bp · +
psbB · MT156373.1 · 70,874–72,400 bp · +
psbT · MT156373.1 · 72,582–72,683 bp · +
psbH · MT156373.1 · 72,986–73,207 bp · +
petB · MT156373.1 · 73,341–74,705 bp · +
petD · MT156373.1 · 74,893–76,076 bp · +
ycf2 · MT156373.1 · 84,560–91,399 bp · +
ycf15 · MT156373.1 · 91,490–91,738 bp · +
trnV-GAC · MT156373.1 · 98,091–98,162 bp · +
rrn16 · MT156373.1 · 98,389–99,879 bp · +
trnI-GAU · MT156373.1 · 100,178–101,196 bp · +
trnA-UGC · MT156373.1 · 101,261–102,137 bp · +
rrn23 · MT156373.1 · 102,303–105,113 bp · +
rrn4.5 · MT156373.1 · 105,212–105,314 bp · +
rrn5 · MT156373.1 · 105,570–105,690 bp · +
trnR-ACG · MT156373.1 · 105,934–106,007 bp · +
ycf1 · MT156373.1 · 106,911–107,960 bp · +
rpl32 · MT156373.1 · 110,610–110,780 bp · +
trnL-UAG · MT156373.1 · 111,430–111,509 bp · +
ccsA · MT156373.1 · 111,606–112,583 bp · +
trnN-GUU · MT156373.1 · 126,867–126,938 bp · +
rps7 · MT156373.1 · 137,860–138,327 bp · +
ndhB · MT156373.1 · 138,656–140,809 bp · +
trnL-CAA · MT156373.1 · 141,369–141,449 bp · +
trnI-CAU · MT156373.1 · 148,977–149,050 bp · +
rpl23 · MT156373.1 · 149,216–149,497 bp · +
rpl2 · MT156373.1 · 149,516–151,007 bp · +
rps19 · MT156373.1 · 151,068–151,091 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Salvia madrensis
ANNOTATED PLASTOME
MT156373.1
151,091 bp · 134 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37773 75546 113318 151091 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2 rps19
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
135 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 1 74 74 Locate
psbA gene − 394 1452 1059 Locate
trnK-UUU gene − 1684 4249 2566 Locate
matK gene − 1988 3511 1524 Locate
rps16 gene − 4820 5918 1099 Locate
trnQ-UUG gene − 6674 6745 72 Locate
psbK gene + 7131 7316 186 Locate
psbI gene + 7712 7822 111 Locate
trnS-GCU gene − 7973 8060 88 Locate
trnG-UCC gene + 8766 9526 761 Locate
trnR-UCU gene + 9703 9774 72 Locate
atpA gene − 9885 11408 1524 Locate
atpF gene − 11502 12763 1262 Locate
atpH gene − 13037 13282 246 Locate
atpI gene − 14294 15037 744 Locate
rps2 gene − 15261 15971 711 Locate
rpoC2 gene − 16175 20362 4188 Locate
rpoC1 gene − 20530 23362 2833 Locate
rpoB gene − 23368 26580 3213 Locate
trnC-GCA gene + 27743 27813 71 Locate
petN gene + 27969 28058 90 Locate
psbM gene − 29059 29163 105 Locate
trnD-GUC gene − 29534 29607 74 Locate
trnY-GUA gene − 29725 29808 84 Locate
trnE-UUC gene − 29879 29951 73 Locate
trnT-GGU gene + 30500 30571 72 Locate
psbD gene + 31944 33005 1062 Locate
psbC gene + 32953 34374 1422 Locate
trnS-UGA gene − 34613 34705 93 Locate
psbZ gene + 35033 35221 189 Locate
trnG-GCC gene + 35499 35569 71 Locate
trnfM-CAU gene − 35726 35799 74 Locate
rps14 gene − 35944 36246 303 Locate
psaB gene − 36369 38573 2205 Locate
psaA gene − 38599 40851 2253 Locate
ycf3 gene − 41582 43522 1941 Locate
trnS-GGA gene + 44355 44441 87 Locate
rps4 gene − 44719 45324 606 Locate
trnT-UGU gene − 45684 45756 73 Locate
trnL-UAA gene + 46415 46989 575 Locate
trnF-GAA gene + 47301 47373 73 Locate
ndhJ gene − 47851 48327 477 Locate
ndhK gene − 48438 49115 678 Locate
ndhC gene − 49167 49529 363 Locate
trnV-UAC gene − 50372 51017 646 Locate
trnM-CAU gene + 51198 51270 73 Locate
atpE gene − 51460 51861 402 Locate
atpB gene − 51858 53354 1497 Locate
rbcL gene + 54155 55588 1434 Locate
accD gene + 56260 57729 1470 Locate
psaI gene + 58193 58303 111 Locate
ycf4 gene + 58747 59301 555 Locate
cemA gene + 59943 60632 690 Locate
petA gene + 60854 61816 963 Locate
psbJ gene − 62825 62947 123 Locate
psbL gene − 63077 63193 117 Locate
psbF gene − 63217 63336 120 Locate
psbE gene − 63351 63602 252 Locate
petL gene + 64503 64598 96 Locate
petG gene + 64777 64890 114 Locate
trnW-CCA gene − 65005 65078 74 Locate
trnP-UGG gene − 65253 65326 74 Locate
psaJ gene + 65605 65739 135 Locate
rpl33 gene + 66178 66378 201 Locate
rps18 gene + 66551 66856 306 Locate
rpl20 gene − 67089 67475 387 Locate
rps12 gene − 68283 68396 114 Locate
clpP gene − 68520 70429 1910 Locate
psbB gene + 70874 72400 1527 Locate
psbT gene + 72582 72683 102 Locate
psbN gene − 72749 72880 132 Locate
psbH gene + 72986 73207 222 Locate
petB gene + 73341 74705 1365 Locate
petD gene + 74893 76076 1184 Locate
rpoA gene − 76253 77260 1008 Locate
rps11 gene − 77330 77746 417 Locate
rpl36 gene − 77858 77971 114 Locate
infA gene − 78067 78300 234 Locate
rps8 gene − 78423 78827 405 Locate
rpl14 gene − 79001 79369 369 Locate
rpl16 gene − 79500 80775 1276 Locate
rps3 gene − 80918 81580 663 Locate
rpl22 gene − 81565 82032 468 Locate
rps19 gene − 82102 82380 279 Locate
rpl2 gene − 82441 83932 1492 Locate
rpl23 gene − 83951 84232 282 Locate
trnI-CAU gene − 84398 84471 74 Locate
ycf2 gene + 84560 91399 6840 Locate
ycf15 gene + 91490 91738 249 Locate
trnL-CAA gene − 91999 92079 81 Locate
ndhB gene − 92639 94792 2154 Locate
rps7 gene − 95121 95588 468 Locate
rps12 gene − 95642 96435 794 Locate
trnV-GAC gene + 98091 98162 72 Locate
rrn16 gene + 98389 99879 1491 Locate
trnI-GAU gene + 100178 101196 1019 Locate
trnA-UGC gene + 101261 102137 877 Locate
rrn23 gene + 102303 105113 2811 Locate
rrn4.5 gene + 105212 105314 103 Locate
rrn5 gene + 105570 105690 121 Locate
trnR-ACG gene + 105934 106007 74 Locate
trnN-GUU gene − 106510 106581 72 Locate
ycf1 gene + 106911 107960 1050 Locate
ndhF gene − 107929 110160 2232 Locate
rpl32 gene + 110610 110780 171 Locate
trnL-UAG gene + 111430 111509 80 Locate
ccsA gene + 111606 112583 978 Locate
ndhD gene − 112822 114363 1542 Locate
psaC gene − 114455 114700 246 Locate
ndhE gene − 114951 115256 306 Locate
ndhG gene − 115469 115999 531 Locate
ndhI gene − 116362 116868 507 Locate
ndhA gene − 116949 119049 2101 Locate
ndhH gene − 119051 120232 1182 Locate
rps15 gene − 120332 120604 273 Locate
ycf1 gene − 121012 126537 5526 Locate
trnN-GUU gene + 126867 126938 72 Locate
trnR-ACG gene − 127441 127514 74 Locate
rrn5 gene − 127758 127878 121 Locate
rrn4.5 gene − 128134 128236 103 Locate
rrn23 gene − 128335 131145 2811 Locate
trnA-UGC gene − 131311 132187 877 Locate
trnI-GAU gene − 132252 133270 1019 Locate
rrn16 gene − 133569 135059 1491 Locate
trnV-GAC gene − 135286 135357 72 Locate
rps12 gene + 137013 137806 794 Locate
rps7 gene + 137860 138327 468 Locate
ndhB gene + 138656 140809 2154 Locate
trnL-CAA gene + 141369 141449 81 Locate
ycf15 gene − 141710 141958 249 Locate
ycf2 gene − 142049 148888 6840 Locate
trnI-CAU gene + 148977 149050 74 Locate
rpl23 gene + 149216 149497 282 Locate
rpl2 gene + 149516 151007 1492 Locate
rps19 gene + 151068 151091 24 Locate
Status Available
Accession MT156373.1
Length 151,091 bp
GC content 38.0%
Annotated genes 134
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 27 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 0
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources