Salvia microphylla chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
trnH-GUG · MT156365.1 · 2–75 bp · −
psbA · MT156365.1 · 393–1,451 bp · −
trnK-UUU · MT156365.1 · 1,683–4,249 bp · −
matK · MT156365.1 · 1,988–3,511 bp · −
rps16 · MT156365.1 · 4,820–5,918 bp · −
trnQ-UUG · MT156365.1 · 6,673–6,744 bp · −
trnS-GCU · MT156365.1 · 7,970–8,057 bp · −
atpA · MT156365.1 · 9,880–11,403 bp · −
atpF · MT156365.1 · 11,501–12,760 bp · −
atpH · MT156365.1 · 13,034–13,279 bp · −
atpI · MT156365.1 · 14,291–15,034 bp · −
rps2 · MT156365.1 · 15,258–15,968 bp · −
rpoC2 · MT156365.1 · 16,171–20,358 bp · −
rpoC1 · MT156365.1 · 20,525–23,358 bp · −
rpoB · MT156365.1 · 23,364–26,576 bp · −
psbM · MT156365.1 · 29,036–29,140 bp · −
trnD-GUC · MT156365.1 · 29,511–29,584 bp · −
trnY-GUA · MT156365.1 · 29,697–29,780 bp · −
trnE-UUC · MT156365.1 · 29,851–29,923 bp · −
trnS-UGA · MT156365.1 · 34,578–34,670 bp · −
trnfM-CAU · MT156365.1 · 35,691–35,764 bp · −
rps14 · MT156365.1 · 35,909–36,211 bp · −
psaB · MT156365.1 · 36,334–38,538 bp · −
psaA · MT156365.1 · 38,564–40,816 bp · −
ycf3 · MT156365.1 · 41,547–43,476 bp · −
rps4 · MT156365.1 · 44,668–45,273 bp · −
trnT-UGU · MT156365.1 · 45,634–45,706 bp · −
ndhJ · MT156365.1 · 47,781–48,257 bp · −
ndhK · MT156365.1 · 48,368–49,045 bp · −
ndhC · MT156365.1 · 49,097–49,459 bp · −
trnV-UAC · MT156365.1 · 50,263–50,908 bp · −
atpE · MT156365.1 · 51,352–51,753 bp · −
atpB · MT156365.1 · 51,750–53,246 bp · −
psbJ · MT156365.1 · 62,689–62,811 bp · −
psbL · MT156365.1 · 62,941–63,057 bp · −
psbF · MT156365.1 · 63,081–63,200 bp · −
psbE · MT156365.1 · 63,215–63,466 bp · −
trnW-CCA · MT156365.1 · 64,876–64,949 bp · −
trnP-UGG · MT156365.1 · 65,127–65,200 bp · −
rpl20 · MT156365.1 · 66,961–67,347 bp · −
rps12 · MT156365.1 · 68,155–68,268 bp · −
rps12 · MT156365.1 · 95,521–96,314 bp · −
clpP · MT156365.1 · 68,392–70,298 bp · −
psbN · MT156365.1 · 72,627–72,758 bp · −
rpoA · MT156365.1 · 76,130–77,137 bp · −
rps11 · MT156365.1 · 77,207–77,623 bp · −
rpl36 · MT156365.1 · 77,735–77,848 bp · −
infA · MT156365.1 · 77,944–78,177 bp · −
rps8 · MT156365.1 · 78,300–78,704 bp · −
rpl14 · MT156365.1 · 78,877–79,245 bp · −
rpl16 · MT156365.1 · 79,376–80,651 bp · −
rps3 · MT156365.1 · 80,794–81,456 bp · −
rpl22 · MT156365.1 · 81,441–81,908 bp · −
rps19 · MT156365.1 · 81,984–82,262 bp · −
rpl2 · MT156365.1 · 82,324–83,811 bp · −
rpl23 · MT156365.1 · 83,830–84,111 bp · −
trnI-CAU · MT156365.1 · 84,277–84,350 bp · −
trnL-CAA · MT156365.1 · 91,878–91,958 bp · −
ndhB · MT156365.1 · 92,518–94,671 bp · −
rps7 · MT156365.1 · 95,000–95,467 bp · −
trnN-GUU · MT156365.1 · 106,407–106,478 bp · −
ndhF · MT156365.1 · 107,826–110,057 bp · −
ndhD · MT156365.1 · 112,624–114,165 bp · −
psaC · MT156365.1 · 114,259–114,504 bp · −
ndhE · MT156365.1 · 114,755–115,060 bp · −
ndhG · MT156365.1 · 115,273–115,803 bp · −
ndhI · MT156365.1 · 116,169–116,675 bp · −
ndhA · MT156365.1 · 116,756–118,852 bp · −
ndhH · MT156365.1 · 118,854–120,035 bp · −
rps15 · MT156365.1 · 120,135–120,407 bp · −
ycf1 · MT156365.1 · 120,814–126,339 bp · −
trnR-ACG · MT156365.1 · 127,243–127,316 bp · −
rrn5 · MT156365.1 · 127,560–127,680 bp · −
rrn4.5 · MT156365.1 · 127,936–128,038 bp · −
rrn23 · MT156365.1 · 128,137–130,947 bp · −
trnA-UGC · MT156365.1 · 131,113–131,989 bp · −
trnI-GAU · MT156365.1 · 132,054–133,072 bp · −
rrn16 · MT156365.1 · 133,371–134,861 bp · −
trnV-GAC · MT156365.1 · 135,088–135,159 bp · −
ycf15 · MT156365.1 · 141,530–141,778 bp · −
ycf2 · MT156365.1 · 141,869–148,708 bp · −
psbK · MT156365.1 · 7,131–7,316 bp · +
psbI · MT156365.1 · 7,710–7,820 bp · +
trnG-UCC · MT156365.1 · 8,761–9,521 bp · +
trnR-UCU · MT156365.1 · 9,698–9,769 bp · +
trnC-GCA · MT156365.1 · 27,739–27,809 bp · +
petN · MT156365.1 · 27,965–28,054 bp · +
trnT-GGU · MT156365.1 · 30,465–30,536 bp · +
psbD · MT156365.1 · 31,909–32,970 bp · +
psbC · MT156365.1 · 32,918–34,339 bp · +
psbZ · MT156365.1 · 34,998–35,186 bp · +
trnG-GCC · MT156365.1 · 35,464–35,534 bp · +
trnS-GGA · MT156365.1 · 44,304–44,390 bp · +
trnL-UAA · MT156365.1 · 46,364–46,938 bp · +
trnF-GAA · MT156365.1 · 47,226–47,298 bp · +
trnM-CAU · MT156365.1 · 51,089–51,161 bp · +
rbcL · MT156365.1 · 54,048–55,481 bp · +
accD · MT156365.1 · 56,153–57,580 bp · +
psaI · MT156365.1 · 58,038–58,148 bp · +
ycf4 · MT156365.1 · 58,611–59,165 bp · +
cemA · MT156365.1 · 59,807–60,496 bp · +
petA · MT156365.1 · 60,718–61,680 bp · +
petL · MT156365.1 · 64,374–64,469 bp · +
petG · MT156365.1 · 64,648–64,761 bp · +
psaJ · MT156365.1 · 65,478–65,612 bp · +
rpl33 · MT156365.1 · 66,051–66,251 bp · +
rps18 · MT156365.1 · 66,424–66,729 bp · +
rps12 · MT156365.1 · 136,833–137,626 bp · +
psbB · MT156365.1 · 70,743–72,269 bp · +
psbT · MT156365.1 · 72,460–72,561 bp · +
psbH · MT156365.1 · 72,864–73,085 bp · +
petB · MT156365.1 · 73,219–74,582 bp · +
petD · MT156365.1 · 74,770–75,953 bp · +
ycf2 · MT156365.1 · 84,439–91,278 bp · +
ycf15 · MT156365.1 · 91,369–91,617 bp · +
trnV-GAC · MT156365.1 · 97,988–98,059 bp · +
rrn16 · MT156365.1 · 98,286–99,776 bp · +
trnI-GAU · MT156365.1 · 100,075–101,093 bp · +
trnA-UGC · MT156365.1 · 101,158–102,034 bp · +
rrn23 · MT156365.1 · 102,200–105,010 bp · +
rrn4.5 · MT156365.1 · 105,109–105,211 bp · +
rrn5 · MT156365.1 · 105,467–105,587 bp · +
trnR-ACG · MT156365.1 · 105,831–105,904 bp · +
ycf1 · MT156365.1 · 106,808–107,857 bp · +
rpl32 · MT156365.1 · 110,513–110,683 bp · +
trnL-UAG · MT156365.1 · 111,332–111,411 bp · +
ccsA · MT156365.1 · 111,508–112,485 bp · +
trnN-GUU · MT156365.1 · 126,669–126,740 bp · +
rps7 · MT156365.1 · 137,680–138,147 bp · +
ndhB · MT156365.1 · 138,476–140,629 bp · +
trnL-CAA · MT156365.1 · 141,189–141,269 bp · +
trnI-CAU · MT156365.1 · 148,797–148,870 bp · +
rpl23 · MT156365.1 · 149,036–149,317 bp · +
rpl2 · MT156365.1 · 149,336–150,823 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Salvia microphylla
ANNOTATED PLASTOME
MT156365.1
150,873 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37718 75436 113155 150873 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 2 75 74 Locate
psbA gene − 393 1451 1059 Locate
trnK-UUU gene − 1683 4249 2567 Locate
matK gene − 1988 3511 1524 Locate
rps16 gene − 4820 5918 1099 Locate
trnQ-UUG gene − 6673 6744 72 Locate
psbK gene + 7131 7316 186 Locate
psbI gene + 7710 7820 111 Locate
trnS-GCU gene − 7970 8057 88 Locate
trnG-UCC gene + 8761 9521 761 Locate
trnR-UCU gene + 9698 9769 72 Locate
atpA gene − 9880 11403 1524 Locate
atpF gene − 11501 12760 1260 Locate
atpH gene − 13034 13279 246 Locate
atpI gene − 14291 15034 744 Locate
rps2 gene − 15258 15968 711 Locate
rpoC2 gene − 16171 20358 4188 Locate
rpoC1 gene − 20525 23358 2834 Locate
rpoB gene − 23364 26576 3213 Locate
trnC-GCA gene + 27739 27809 71 Locate
petN gene + 27965 28054 90 Locate
psbM gene − 29036 29140 105 Locate
trnD-GUC gene − 29511 29584 74 Locate
trnY-GUA gene − 29697 29780 84 Locate
trnE-UUC gene − 29851 29923 73 Locate
trnT-GGU gene + 30465 30536 72 Locate
psbD gene + 31909 32970 1062 Locate
psbC gene + 32918 34339 1422 Locate
trnS-UGA gene − 34578 34670 93 Locate
psbZ gene + 34998 35186 189 Locate
trnG-GCC gene + 35464 35534 71 Locate
trnfM-CAU gene − 35691 35764 74 Locate
rps14 gene − 35909 36211 303 Locate
psaB gene − 36334 38538 2205 Locate
psaA gene − 38564 40816 2253 Locate
ycf3 gene − 41547 43476 1930 Locate
trnS-GGA gene + 44304 44390 87 Locate
rps4 gene − 44668 45273 606 Locate
trnT-UGU gene − 45634 45706 73 Locate
trnL-UAA gene + 46364 46938 575 Locate
trnF-GAA gene + 47226 47298 73 Locate
ndhJ gene − 47781 48257 477 Locate
ndhK gene − 48368 49045 678 Locate
ndhC gene − 49097 49459 363 Locate
trnV-UAC gene − 50263 50908 646 Locate
trnM-CAU gene + 51089 51161 73 Locate
atpE gene − 51352 51753 402 Locate
atpB gene − 51750 53246 1497 Locate
rbcL gene + 54048 55481 1434 Locate
accD gene + 56153 57580 1428 Locate
psaI gene + 58038 58148 111 Locate
ycf4 gene + 58611 59165 555 Locate
cemA gene + 59807 60496 690 Locate
petA gene + 60718 61680 963 Locate
psbJ gene − 62689 62811 123 Locate
psbL gene − 62941 63057 117 Locate
psbF gene − 63081 63200 120 Locate
psbE gene − 63215 63466 252 Locate
petL gene + 64374 64469 96 Locate
petG gene + 64648 64761 114 Locate
trnW-CCA gene − 64876 64949 74 Locate
trnP-UGG gene − 65127 65200 74 Locate
psaJ gene + 65478 65612 135 Locate
rpl33 gene + 66051 66251 201 Locate
rps18 gene + 66424 66729 306 Locate
rpl20 gene − 66961 67347 387 Locate
rps12 gene − 68155 68268 114 Locate
clpP gene − 68392 70298 1907 Locate
psbB gene + 70743 72269 1527 Locate
psbT gene + 72460 72561 102 Locate
psbN gene − 72627 72758 132 Locate
psbH gene + 72864 73085 222 Locate
petB gene + 73219 74582 1364 Locate
petD gene + 74770 75953 1184 Locate
rpoA gene − 76130 77137 1008 Locate
rps11 gene − 77207 77623 417 Locate
rpl36 gene − 77735 77848 114 Locate
infA gene − 77944 78177 234 Locate
rps8 gene − 78300 78704 405 Locate
rpl14 gene − 78877 79245 369 Locate
rpl16 gene − 79376 80651 1276 Locate
rps3 gene − 80794 81456 663 Locate
rpl22 gene − 81441 81908 468 Locate
rps19 gene − 81984 82262 279 Locate
rpl2 gene − 82324 83811 1488 Locate
rpl23 gene − 83830 84111 282 Locate
trnI-CAU gene − 84277 84350 74 Locate
ycf2 gene + 84439 91278 6840 Locate
ycf15 gene + 91369 91617 249 Locate
trnL-CAA gene − 91878 91958 81 Locate
ndhB gene − 92518 94671 2154 Locate
rps7 gene − 95000 95467 468 Locate
rps12 gene − 95521 96314 794 Locate
trnV-GAC gene + 97988 98059 72 Locate
rrn16 gene + 98286 99776 1491 Locate
trnI-GAU gene + 100075 101093 1019 Locate
trnA-UGC gene + 101158 102034 877 Locate
rrn23 gene + 102200 105010 2811 Locate
rrn4.5 gene + 105109 105211 103 Locate
rrn5 gene + 105467 105587 121 Locate
trnR-ACG gene + 105831 105904 74 Locate
trnN-GUU gene − 106407 106478 72 Locate
ycf1 gene + 106808 107857 1050 Locate
ndhF gene − 107826 110057 2232 Locate
rpl32 gene + 110513 110683 171 Locate
trnL-UAG gene + 111332 111411 80 Locate
ccsA gene + 111508 112485 978 Locate
ndhD gene − 112624 114165 1542 Locate
psaC gene − 114259 114504 246 Locate
ndhE gene − 114755 115060 306 Locate
ndhG gene − 115273 115803 531 Locate
ndhI gene − 116169 116675 507 Locate
ndhA gene − 116756 118852 2097 Locate
ndhH gene − 118854 120035 1182 Locate
rps15 gene − 120135 120407 273 Locate
ycf1 gene − 120814 126339 5526 Locate
trnN-GUU gene + 126669 126740 72 Locate
trnR-ACG gene − 127243 127316 74 Locate
rrn5 gene − 127560 127680 121 Locate
rrn4.5 gene − 127936 128038 103 Locate
rrn23 gene − 128137 130947 2811 Locate
trnA-UGC gene − 131113 131989 877 Locate
trnI-GAU gene − 132054 133072 1019 Locate
rrn16 gene − 133371 134861 1491 Locate
trnV-GAC gene − 135088 135159 72 Locate
rps12 gene + 136833 137626 794 Locate
rps7 gene + 137680 138147 468 Locate
ndhB gene + 138476 140629 2154 Locate
trnL-CAA gene + 141189 141269 81 Locate
ycf15 gene − 141530 141778 249 Locate
ycf2 gene − 141869 148708 6840 Locate
trnI-CAU gene + 148797 148870 74 Locate
rpl23 gene + 149036 149317 282 Locate
rpl2 gene + 149336 150823 1488 Locate
Status Available
Accession MT156365.1
Length 150,873 bp
GC content 38.0%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 0
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources