Salvia nilotica chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
LSC
IR
SSC
IR
trnH-GUG · NC_050898.1 · 9–82 bp · −
psbA · NC_050898.1 · 335–1,393 bp · −
trnK-UUU · NC_050898.1 · 1,626–4,212 bp · −
matK · NC_050898.1 · 1,944–3,473 bp · −
rps16 · NC_050898.1 · 4,768–5,868 bp · −
trnQ-UUG · NC_050898.1 · 6,425–6,496 bp · −
trnS-GCU · NC_050898.1 · 7,714–7,801 bp · −
atpA · NC_050898.1 · 9,624–11,147 bp · −
atpF · NC_050898.1 · 11,249–12,500 bp · −
atpH · NC_050898.1 · 12,775–13,020 bp · −
atpI · NC_050898.1 · 14,046–14,789 bp · −
rps2 · NC_050898.1 · 15,021–15,731 bp · −
rpoC2 · NC_050898.1 · 15,950–20,137 bp · −
rpoC1 · NC_050898.1 · 20,302–23,124 bp · −
rpoB · NC_050898.1 · 23,151–26,363 bp · −
psbM · NC_050898.1 · 28,788–28,892 bp · −
trnD-GUC · NC_050898.1 · 29,411–29,484 bp · −
trnY-GUA · NC_050898.1 · 29,595–29,678 bp · −
trnE-UUC · NC_050898.1 · 29,754–29,826 bp · −
trnS-UGA · NC_050898.1 · 34,501–34,593 bp · −
trnfM-CAU · NC_050898.1 · 35,642–35,715 bp · −
rps14 · NC_050898.1 · 35,860–36,162 bp · −
psaB · NC_050898.1 · 36,284–38,488 bp · −
psaA · NC_050898.1 · 38,514–40,766 bp · −
ycf3 · NC_050898.1 · 41,563–43,522 bp · −
rps4 · NC_050898.1 · 44,701–45,306 bp · −
trnT-UGU · NC_050898.1 · 45,658–45,730 bp · −
ndhJ · NC_050898.1 · 48,005–48,481 bp · −
ndhK · NC_050898.1 · 48,592–49,269 bp · −
ndhC · NC_050898.1 · 49,321–49,683 bp · −
trnV-UAC · NC_050898.1 · 50,632–51,277 bp · −
atpE · NC_050898.1 · 51,741–52,142 bp · −
atpB · NC_050898.1 · 52,139–53,635 bp · −
psbJ · NC_050898.1 · 63,190–63,312 bp · −
psbL · NC_050898.1 · 63,442–63,558 bp · −
psbF · NC_050898.1 · 63,582–63,701 bp · −
psbE · NC_050898.1 · 63,716–63,967 bp · −
trnW-CCA · NC_050898.1 · 65,375–65,448 bp · −
trnP-UGG · NC_050898.1 · 65,622–65,695 bp · −
rpl20 · NC_050898.1 · 67,470–67,856 bp · −
rps12 · NC_050898.1 · 68,658–68,771 bp · −
rps12 · NC_050898.1 · 96,037–96,830 bp · −
clpP · NC_050898.1 · 68,894–70,785 bp · −
psbN · NC_050898.1 · 73,122–73,253 bp · −
rpoA · NC_050898.1 · 76,651–77,658 bp · −
rps11 · NC_050898.1 · 77,729–78,145 bp · −
rpl36 · NC_050898.1 · 78,255–78,368 bp · −
infA · NC_050898.1 · 78,464–78,697 bp · −
rps8 · NC_050898.1 · 78,818–79,222 bp · −
rpl14 · NC_050898.1 · 79,403–79,771 bp · −
rpl16 · NC_050898.1 · 79,900–81,169 bp · −
rps3 · NC_050898.1 · 81,323–81,985 bp · −
rpl22 · NC_050898.1 · 81,970–82,437 bp · −
rps19 · NC_050898.1 · 82,507–82,785 bp · −
rpl2 · NC_050898.1 · 82,848–84,335 bp · −
rpl23 · NC_050898.1 · 84,354–84,635 bp · −
trnI-CAU · NC_050898.1 · 84,801–84,874 bp · −
trnL-CAA · NC_050898.1 · 92,402–92,482 bp · −
ndhB · NC_050898.1 · 93,034–95,241 bp · −
rps7 · NC_050898.1 · 95,516–95,983 bp · −
trnN-GUU · NC_050898.1 · 106,903–106,974 bp · −
ndhF · NC_050898.1 · 108,328–110,559 bp · −
ndhD · NC_050898.1 · 113,288–114,829 bp · −
psaC · NC_050898.1 · 114,926–115,171 bp · −
ndhE · NC_050898.1 · 115,422–115,724 bp · −
ndhG · NC_050898.1 · 115,874–116,404 bp · −
ndhI · NC_050898.1 · 116,783–117,289 bp · −
ndhA · NC_050898.1 · 117,370–119,467 bp · −
ndhH · NC_050898.1 · 119,469–120,650 bp · −
rps15 · NC_050898.1 · 120,750–121,022 bp · −
ycf1 · NC_050898.1 · 121,425–126,998 bp · −
trnR-ACG · NC_050898.1 · 127,807–127,880 bp · −
rrn5 · NC_050898.1 · 128,130–128,250 bp · −
rrn4.5 · NC_050898.1 · 128,500–128,602 bp · −
rrn23 · NC_050898.1 · 128,703–131,511 bp · −
trnA-UGC · NC_050898.1 · 131,672–132,556 bp · −
trnI-GAU · NC_050898.1 · 132,629–133,648 bp · −
rrn16 · NC_050898.1 · 133,947–135,437 bp · −
trnV-GAC · NC_050898.1 · 135,664–135,735 bp · −
ycf15 · NC_050898.1 · 142,050–142,313 bp · −
ycf2 · NC_050898.1 · 142,389–149,228 bp · −
psbK · NC_050898.1 · 6,869–7,057 bp · +
psbI · NC_050898.1 · 7,449–7,559 bp · +
trnG-UCC · NC_050898.1 · 8,513–9,266 bp · +
trnR-UCU · NC_050898.1 · 9,447–9,518 bp · +
trnC-GCA · NC_050898.1 · 27,507–27,577 bp · +
petN · NC_050898.1 · 27,741–27,830 bp · +
trnT-GGU · NC_050898.1 · 30,397–30,468 bp · +
psbD · NC_050898.1 · 31,825–32,886 bp · +
psbC · NC_050898.1 · 32,834–34,255 bp · +
psbZ · NC_050898.1 · 34,929–35,117 bp · +
trnG-GCC · NC_050898.1 · 35,394–35,464 bp · +
trnS-GGA · NC_050898.1 · 44,347–44,433 bp · +
trnL-UAA · NC_050898.1 · 46,423–47,000 bp · +
trnF-GAA · NC_050898.1 · 47,293–47,365 bp · +
trnM-CAU · NC_050898.1 · 51,458–51,530 bp · +
rbcL · NC_050898.1 · 54,413–55,867 bp · +
accD · NC_050898.1 · 56,565–58,046 bp · +
psaI · NC_050898.1 · 58,514–58,624 bp · +
ycf4 · NC_050898.1 · 59,074–59,628 bp · +
cemA · NC_050898.1 · 60,291–60,980 bp · +
petA · NC_050898.1 · 61,188–62,150 bp · +
petL · NC_050898.1 · 64,873–64,968 bp · +
petG · NC_050898.1 · 65,147–65,260 bp · +
psaJ · NC_050898.1 · 65,974–66,108 bp · +
rpl33 · NC_050898.1 · 66,554–66,754 bp · +
rps18 · NC_050898.1 · 66,930–67,235 bp · +
rps12 · NC_050898.1 · 137,361–138,154 bp · +
psbB · NC_050898.1 · 71,239–72,765 bp · +
psbT · NC_050898.1 · 72,954–73,061 bp · +
psbH · NC_050898.1 · 73,296–73,580 bp · +
petB · NC_050898.1 · 73,706–75,079 bp · +
petD · NC_050898.1 · 75,281–76,467 bp · +
ycf2 · NC_050898.1 · 84,963–91,802 bp · +
ycf15 · NC_050898.1 · 91,893–92,141 bp · +
trnV-GAC · NC_050898.1 · 98,456–98,527 bp · +
rrn16 · NC_050898.1 · 98,754–100,244 bp · +
trnI-GAU · NC_050898.1 · 100,543–101,562 bp · +
trnA-UGC · NC_050898.1 · 101,635–102,519 bp · +
rrn23 · NC_050898.1 · 102,680–105,488 bp · +
rrn4.5 · NC_050898.1 · 105,589–105,691 bp · +
rrn5 · NC_050898.1 · 105,941–106,061 bp · +
trnR-ACG · NC_050898.1 · 106,311–106,384 bp · +
ycf1 · NC_050898.1 · 107,304–108,461 bp · +
rpl32 · NC_050898.1 · 110,989–111,186 bp · +
trnL-UAG · NC_050898.1 · 111,910–111,989 bp · +
ccsA · NC_050898.1 · 112,039–113,058 bp · +
trnN-GUU · NC_050898.1 · 127,217–127,288 bp · +
rps7 · NC_050898.1 · 138,208–138,675 bp · +
ndhB · NC_050898.1 · 138,950–141,157 bp · +
trnL-CAA · NC_050898.1 · 141,709–141,789 bp · +
trnI-CAU · NC_050898.1 · 149,317–149,390 bp · +
rpl23 · NC_050898.1 · 149,556–149,837 bp · +
rpl2 · NC_050898.1 · 149,856–151,343 bp · +
rps19 · NC_050898.1 · 151,406–151,450 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Salvia nilotica
ANNOTATED PLASTOME
NC_050898.1
151,450 bp · 134 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37862 75725 113588 151450 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2 rps19
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
135 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 9 82 74 Locate
psbA gene − 335 1393 1059 Locate
trnK-UUU gene − 1626 4212 2587 Locate
matK gene − 1944 3473 1530 Locate
rps16 gene − 4768 5868 1101 Locate
trnQ-UUG gene − 6425 6496 72 Locate
psbK gene + 6869 7057 189 Locate
psbI gene + 7449 7559 111 Locate
trnS-GCU gene − 7714 7801 88 Locate
trnG-UCC gene + 8513 9266 754 Locate
trnR-UCU gene + 9447 9518 72 Locate
atpA gene − 9624 11147 1524 Locate
atpF gene − 11249 12500 1252 Locate
atpH gene − 12775 13020 246 Locate
atpI gene − 14046 14789 744 Locate
rps2 gene − 15021 15731 711 Locate
rpoC2 gene − 15950 20137 4188 Locate
rpoC1 gene − 20302 23124 2823 Locate
rpoB gene − 23151 26363 3213 Locate
trnC-GCA gene + 27507 27577 71 Locate
petN gene + 27741 27830 90 Locate
psbM gene − 28788 28892 105 Locate
trnD-GUC gene − 29411 29484 74 Locate
trnY-GUA gene − 29595 29678 84 Locate
trnE-UUC gene − 29754 29826 73 Locate
trnT-GGU gene + 30397 30468 72 Locate
psbD gene + 31825 32886 1062 Locate
psbC gene + 32834 34255 1422 Locate
trnS-UGA gene − 34501 34593 93 Locate
psbZ gene + 34929 35117 189 Locate
trnG-GCC gene + 35394 35464 71 Locate
trnfM-CAU gene − 35642 35715 74 Locate
rps14 gene − 35860 36162 303 Locate
psaB gene − 36284 38488 2205 Locate
psaA gene − 38514 40766 2253 Locate
ycf3 gene − 41563 43522 1960 Locate
trnS-GGA gene + 44347 44433 87 Locate
rps4 gene − 44701 45306 606 Locate
trnT-UGU gene − 45658 45730 73 Locate
trnL-UAA gene + 46423 47000 578 Locate
trnF-GAA gene + 47293 47365 73 Locate
ndhJ gene − 48005 48481 477 Locate
ndhK gene − 48592 49269 678 Locate
ndhC gene − 49321 49683 363 Locate
trnV-UAC gene − 50632 51277 646 Locate
trnM-CAU gene + 51458 51530 73 Locate
atpE gene − 51741 52142 402 Locate
atpB gene − 52139 53635 1497 Locate
rbcL gene + 54413 55867 1455 Locate
accD gene + 56565 58046 1482 Locate
psaI gene + 58514 58624 111 Locate
ycf4 gene + 59074 59628 555 Locate
cemA gene + 60291 60980 690 Locate
petA gene + 61188 62150 963 Locate
psbJ gene − 63190 63312 123 Locate
psbL gene − 63442 63558 117 Locate
psbF gene − 63582 63701 120 Locate
psbE gene − 63716 63967 252 Locate
petL gene + 64873 64968 96 Locate
petG gene + 65147 65260 114 Locate
trnW-CCA gene − 65375 65448 74 Locate
trnP-UGG gene − 65622 65695 74 Locate
psaJ gene + 65974 66108 135 Locate
rpl33 gene + 66554 66754 201 Locate
rps18 gene + 66930 67235 306 Locate
rpl20 gene − 67470 67856 387 Locate
rps12 gene − 68658 68771 114 Locate
clpP gene − 68894 70785 1892 Locate
psbB gene + 71239 72765 1527 Locate
psbT gene + 72954 73061 108 Locate
psbN gene − 73122 73253 132 Locate
psbH gene + 73296 73580 285 Locate
petB gene + 73706 75079 1374 Locate
petD gene + 75281 76467 1187 Locate
rpoA gene − 76651 77658 1008 Locate
rps11 gene − 77729 78145 417 Locate
rpl36 gene − 78255 78368 114 Locate
infA gene − 78464 78697 234 Locate
rps8 gene − 78818 79222 405 Locate
rpl14 gene − 79403 79771 369 Locate
rpl16 gene − 79900 81169 1270 Locate
rps3 gene − 81323 81985 663 Locate
rpl22 gene − 81970 82437 468 Locate
rps19 gene − 82507 82785 279 Locate
rpl2 gene − 82848 84335 1488 Locate
rpl23 gene − 84354 84635 282 Locate
trnI-CAU gene − 84801 84874 74 Locate
ycf2 gene + 84963 91802 6840 Locate
ycf15 gene + 91893 92141 249 Locate
trnL-CAA gene − 92402 92482 81 Locate
ndhB gene − 93034 95241 2208 Locate
rps7 gene − 95516 95983 468 Locate
rps12 gene − 96037 96830 794 Locate
trnV-GAC gene + 98456 98527 72 Locate
rrn16 gene + 98754 100244 1491 Locate
trnI-GAU gene + 100543 101562 1020 Locate
trnA-UGC gene + 101635 102519 885 Locate
rrn23 gene + 102680 105488 2809 Locate
rrn4.5 gene + 105589 105691 103 Locate
rrn5 gene + 105941 106061 121 Locate
trnR-ACG gene + 106311 106384 74 Locate
trnN-GUU gene − 106903 106974 72 Locate
ycf1 gene + 107304 108461 1158 Locate
ndhF gene − 108328 110559 2232 Locate
rpl32 gene + 110989 111186 198 Locate
trnL-UAG gene + 111910 111989 80 Locate
ccsA gene + 112039 113058 1020 Locate
ndhD gene − 113288 114829 1542 Locate
psaC gene − 114926 115171 246 Locate
ndhE gene − 115422 115724 303 Locate
ndhG gene − 115874 116404 531 Locate
ndhI gene − 116783 117289 507 Locate
ndhA gene − 117370 119467 2098 Locate
ndhH gene − 119469 120650 1182 Locate
rps15 gene − 120750 121022 273 Locate
ycf1 gene − 121425 126998 5574 Locate
trnN-GUU gene + 127217 127288 72 Locate
trnR-ACG gene − 127807 127880 74 Locate
rrn5 gene − 128130 128250 121 Locate
rrn4.5 gene − 128500 128602 103 Locate
rrn23 gene − 128703 131511 2809 Locate
trnA-UGC gene − 131672 132556 885 Locate
trnI-GAU gene − 132629 133648 1020 Locate
rrn16 gene − 133947 135437 1491 Locate
trnV-GAC gene − 135664 135735 72 Locate
rps12 gene + 137361 138154 794 Locate
rps7 gene + 138208 138675 468 Locate
ndhB gene + 138950 141157 2208 Locate
trnL-CAA gene + 141709 141789 81 Locate
ycf15 gene − 142050 142313 264 Locate
ycf2 gene − 142389 149228 6840 Locate
trnI-CAU gene + 149317 149390 74 Locate
rpl23 gene + 149556 149837 282 Locate
rpl2 gene + 149856 151343 1488 Locate
rps19 gene + 151406 151450 45 Locate
Status Available
Accession NC_050898.1
Length 151,450 bp
GC content 38.0%
Annotated genes 134
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 27 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources