Salvia nipponica chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
trnH-GUG · MT156377.1 · 11–84 bp · −
psbA · MT156377.1 · 393–1,451 bp · −
trnK-UUU · MT156377.1 · 1,683–4,275 bp · −
matK · MT156377.1 · 1,982–3,544 bp · −
rps16 · MT156377.1 · 4,841–5,950 bp · −
trnQ-UUG · MT156377.1 · 6,922–6,993 bp · −
trnS-GCU · MT156377.1 · 8,228–8,315 bp · −
atpA · MT156377.1 · 10,107–11,630 bp · −
atpF · MT156377.1 · 11,746–12,978 bp · −
atpH · MT156377.1 · 13,244–13,489 bp · −
atpI · MT156377.1 · 14,469–15,212 bp · −
rps2 · MT156377.1 · 15,437–16,147 bp · −
rpoC2 · MT156377.1 · 16,357–20,544 bp · −
rpoC1 · MT156377.1 · 20,702–23,543 bp · −
rpoB · MT156377.1 · 23,549–26,761 bp · −
psbM · MT156377.1 · 29,204–29,308 bp · −
trnD-GUC · MT156377.1 · 29,837–29,910 bp · −
trnY-GUA · MT156377.1 · 30,021–30,104 bp · −
trnE-UUC · MT156377.1 · 30,176–30,248 bp · −
trnS-UGA · MT156377.1 · 34,905–34,997 bp · −
trnfM-CAU · MT156377.1 · 36,036–36,109 bp · −
rps14 · MT156377.1 · 36,254–36,556 bp · −
psaB · MT156377.1 · 36,680–38,884 bp · −
psaA · MT156377.1 · 38,910–41,162 bp · −
ycf3 · MT156377.1 · 41,897–43,841 bp · −
rps4 · MT156377.1 · 45,029–45,634 bp · −
trnT-UGU · MT156377.1 · 46,008–46,080 bp · −
ndhJ · MT156377.1 · 48,204–48,680 bp · −
ndhK · MT156377.1 · 48,791–49,468 bp · −
ndhC · MT156377.1 · 49,520–49,882 bp · −
trnV-UAC · MT156377.1 · 50,831–51,479 bp · −
atpE · MT156377.1 · 51,952–52,353 bp · −
atpB · MT156377.1 · 52,350–53,846 bp · −
psbJ · MT156377.1 · 63,338–63,460 bp · −
psbL · MT156377.1 · 63,590–63,706 bp · −
psbF · MT156377.1 · 63,730–63,849 bp · −
psbE · MT156377.1 · 63,864–64,115 bp · −
trnW-CCA · MT156377.1 · 65,368–65,441 bp · −
trnP-UGG · MT156377.1 · 65,620–65,693 bp · −
rpl20 · MT156377.1 · 67,472–67,858 bp · −
rps12 · MT156377.1 · 68,668–68,781 bp · −
rps12 · MT156377.1 · 96,018–96,801 bp · −
clpP · MT156377.1 · 68,906–70,825 bp · −
psbN · MT156377.1 · 73,146–73,277 bp · −
rpoA · MT156377.1 · 76,654–77,661 bp · −
rps11 · MT156377.1 · 77,733–78,149 bp · −
rpl36 · MT156377.1 · 78,259–78,372 bp · −
infA · MT156377.1 · 78,468–78,701 bp · −
rps8 · MT156377.1 · 78,828–79,232 bp · −
rpl14 · MT156377.1 · 79,415–79,783 bp · −
rpl16 · MT156377.1 · 79,915–81,192 bp · −
rps3 · MT156377.1 · 81,328–81,990 bp · −
rpl22 · MT156377.1 · 81,975–82,442 bp · −
rps19 · MT156377.1 · 82,512–82,790 bp · −
rpl2 · MT156377.1 · 82,850–84,332 bp · −
rpl23 · MT156377.1 · 84,351–84,632 bp · −
trnI-CAU · MT156377.1 · 84,798–84,871 bp · −
trnL-CAA · MT156377.1 · 92,375–92,455 bp · −
ndhB · MT156377.1 · 93,015–95,168 bp · −
rps7 · MT156377.1 · 95,497–95,964 bp · −
trnN-GUU · MT156377.1 · 106,846–106,917 bp · −
ndhF · MT156377.1 · 108,271–110,493 bp · −
ndhD · MT156377.1 · 113,227–114,768 bp · −
psaC · MT156377.1 · 114,867–115,112 bp · −
ndhE · MT156377.1 · 115,363–115,668 bp · −
ndhG · MT156377.1 · 115,889–116,419 bp · −
ndhI · MT156377.1 · 116,803–117,309 bp · −
ndhA · MT156377.1 · 117,390–119,488 bp · −
ndhH · MT156377.1 · 119,490–120,671 bp · −
rps15 · MT156377.1 · 120,771–121,043 bp · −
ycf1 · MT156377.1 · 121,451–126,985 bp · −
trnR-ACG · MT156377.1 · 127,906–127,979 bp · −
rrn5 · MT156377.1 · 128,223–128,343 bp · −
rrn4.5 · MT156377.1 · 128,599–128,701 bp · −
rrn23 · MT156377.1 · 128,800–131,610 bp · −
trnA-UGC · MT156377.1 · 131,776–132,652 bp · −
trnI-GAU · MT156377.1 · 132,717–133,729 bp · −
rrn16 · MT156377.1 · 134,028–135,518 bp · −
trnV-GAC · MT156377.1 · 135,745–135,816 bp · −
ycf15 · MT156377.1 · 142,118–142,366 bp · −
ycf2 · MT156377.1 · 142,457–149,272 bp · −
psbK · MT156377.1 · 7,380–7,559 bp · +
psbI · MT156377.1 · 7,956–8,066 bp · +
trnG-UCC · MT156377.1 · 8,995–9,747 bp · +
trnR-UCU · MT156377.1 · 9,929–10,000 bp · +
trnC-GCA · MT156377.1 · 27,913–27,983 bp · +
petN · MT156377.1 · 28,147–28,236 bp · +
trnT-GGU · MT156377.1 · 30,785–30,856 bp · +
psbD · MT156377.1 · 32,229–33,290 bp · +
psbC · MT156377.1 · 33,238–34,659 bp · +
psbZ · MT156377.1 · 35,332–35,520 bp · +
trnG-GCC · MT156377.1 · 35,792–35,862 bp · +
trnS-GGA · MT156377.1 · 44,666–44,752 bp · +
trnL-UAA · MT156377.1 · 46,760–47,299 bp · +
trnF-GAA · MT156377.1 · 47,598–47,670 bp · +
trnM-CAU · MT156377.1 · 51,668–51,740 bp · +
rbcL · MT156377.1 · 54,631–56,070 bp · +
accD · MT156377.1 · 56,798–58,243 bp · +
psaI · MT156377.1 · 58,713–58,823 bp · +
ycf4 · MT156377.1 · 59,269–59,823 bp · +
cemA · MT156377.1 · 60,434–61,123 bp · +
petA · MT156377.1 · 61,344–62,306 bp · +
petL · MT156377.1 · 64,897–64,992 bp · +
petG · MT156377.1 · 65,140–65,253 bp · +
psaJ · MT156377.1 · 65,984–66,118 bp · +
rpl33 · MT156377.1 · 66,569–66,769 bp · +
rps18 · MT156377.1 · 66,935–67,240 bp · +
rps12 · MT156377.1 · 137,431–138,214 bp · +
psbB · MT156377.1 · 71,268–72,794 bp · +
psbT · MT156377.1 · 72,978–73,085 bp · +
psbH · MT156377.1 · 73,383–73,604 bp · +
petB · MT156377.1 · 73,730–75,087 bp · +
petD · MT156377.1 · 75,281–76,477 bp · +
ycf2 · MT156377.1 · 84,960–91,775 bp · +
ycf15 · MT156377.1 · 91,866–92,114 bp · +
trnV-GAC · MT156377.1 · 98,416–98,487 bp · +
rrn16 · MT156377.1 · 98,714–100,204 bp · +
trnI-GAU · MT156377.1 · 100,503–101,515 bp · +
trnA-UGC · MT156377.1 · 101,580–102,456 bp · +
rrn23 · MT156377.1 · 102,622–105,432 bp · +
rrn4.5 · MT156377.1 · 105,531–105,633 bp · +
rrn5 · MT156377.1 · 105,889–106,009 bp · +
trnR-ACG · MT156377.1 · 106,253–106,326 bp · +
ycf1 · MT156377.1 · 107,247–108,302 bp · +
rpl32 · MT156377.1 · 110,950–111,120 bp · +
trnL-UAG · MT156377.1 · 111,838–111,917 bp · +
ccsA · MT156377.1 · 112,010–112,987 bp · +
trnN-GUU · MT156377.1 · 127,315–127,386 bp · +
rps7 · MT156377.1 · 138,268–138,735 bp · +
ndhB · MT156377.1 · 139,064–141,217 bp · +
trnL-CAA · MT156377.1 · 141,777–141,857 bp · +
trnI-CAU · MT156377.1 · 149,361–149,434 bp · +
rpl23 · MT156377.1 · 149,600–149,881 bp · +
rpl2 · MT156377.1 · 149,900–151,382 bp · +
rps19 · MT156377.1 · 151,442–151,484 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Salvia nipponica
ANNOTATED PLASTOME
MT156377.1
151,484 bp · 134 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37871 75742 113613 151484 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2 rps19
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
135 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 11 84 74 Locate
psbA gene − 393 1451 1059 Locate
trnK-UUU gene − 1683 4275 2593 Locate
matK gene − 1982 3544 1563 Locate
rps16 gene − 4841 5950 1110 Locate
trnQ-UUG gene − 6922 6993 72 Locate
psbK gene + 7380 7559 180 Locate
psbI gene + 7956 8066 111 Locate
trnS-GCU gene − 8228 8315 88 Locate
trnG-UCC gene + 8995 9747 753 Locate
trnR-UCU gene + 9929 10000 72 Locate
atpA gene − 10107 11630 1524 Locate
atpF gene − 11746 12978 1233 Locate
atpH gene − 13244 13489 246 Locate
atpI gene − 14469 15212 744 Locate
rps2 gene − 15437 16147 711 Locate
rpoC2 gene − 16357 20544 4188 Locate
rpoC1 gene − 20702 23543 2842 Locate
rpoB gene − 23549 26761 3213 Locate
trnC-GCA gene + 27913 27983 71 Locate
petN gene + 28147 28236 90 Locate
psbM gene − 29204 29308 105 Locate
trnD-GUC gene − 29837 29910 74 Locate
trnY-GUA gene − 30021 30104 84 Locate
trnE-UUC gene − 30176 30248 73 Locate
trnT-GGU gene + 30785 30856 72 Locate
psbD gene + 32229 33290 1062 Locate
psbC gene + 33238 34659 1422 Locate
trnS-UGA gene − 34905 34997 93 Locate
psbZ gene + 35332 35520 189 Locate
trnG-GCC gene + 35792 35862 71 Locate
trnfM-CAU gene − 36036 36109 74 Locate
rps14 gene − 36254 36556 303 Locate
psaB gene − 36680 38884 2205 Locate
psaA gene − 38910 41162 2253 Locate
ycf3 gene − 41897 43841 1945 Locate
trnS-GGA gene + 44666 44752 87 Locate
rps4 gene − 45029 45634 606 Locate
trnT-UGU gene − 46008 46080 73 Locate
trnL-UAA gene + 46760 47299 540 Locate
trnF-GAA gene + 47598 47670 73 Locate
ndhJ gene − 48204 48680 477 Locate
ndhK gene − 48791 49468 678 Locate
ndhC gene − 49520 49882 363 Locate
trnV-UAC gene − 50831 51479 649 Locate
trnM-CAU gene + 51668 51740 73 Locate
atpE gene − 51952 52353 402 Locate
atpB gene − 52350 53846 1497 Locate
rbcL gene + 54631 56070 1440 Locate
accD gene + 56798 58243 1446 Locate
psaI gene + 58713 58823 111 Locate
ycf4 gene + 59269 59823 555 Locate
cemA gene + 60434 61123 690 Locate
petA gene + 61344 62306 963 Locate
psbJ gene − 63338 63460 123 Locate
psbL gene − 63590 63706 117 Locate
psbF gene − 63730 63849 120 Locate
psbE gene − 63864 64115 252 Locate
petL gene + 64897 64992 96 Locate
petG gene + 65140 65253 114 Locate
trnW-CCA gene − 65368 65441 74 Locate
trnP-UGG gene − 65620 65693 74 Locate
psaJ gene + 65984 66118 135 Locate
rpl33 gene + 66569 66769 201 Locate
rps18 gene + 66935 67240 306 Locate
rpl20 gene − 67472 67858 387 Locate
rps12 gene − 68668 68781 114 Locate
clpP gene − 68906 70825 1920 Locate
psbB gene + 71268 72794 1527 Locate
psbT gene + 72978 73085 108 Locate
psbN gene − 73146 73277 132 Locate
psbH gene + 73383 73604 222 Locate
petB gene + 73730 75087 1358 Locate
petD gene + 75281 76477 1197 Locate
rpoA gene − 76654 77661 1008 Locate
rps11 gene − 77733 78149 417 Locate
rpl36 gene − 78259 78372 114 Locate
infA gene − 78468 78701 234 Locate
rps8 gene − 78828 79232 405 Locate
rpl14 gene − 79415 79783 369 Locate
rpl16 gene − 79915 81192 1278 Locate
rps3 gene − 81328 81990 663 Locate
rpl22 gene − 81975 82442 468 Locate
rps19 gene − 82512 82790 279 Locate
rpl2 gene − 82850 84332 1483 Locate
rpl23 gene − 84351 84632 282 Locate
trnI-CAU gene − 84798 84871 74 Locate
ycf2 gene + 84960 91775 6816 Locate
ycf15 gene + 91866 92114 249 Locate
trnL-CAA gene − 92375 92455 81 Locate
ndhB gene − 93015 95168 2154 Locate
rps7 gene − 95497 95964 468 Locate
rps12 gene − 96018 96801 784 Locate
trnV-GAC gene + 98416 98487 72 Locate
rrn16 gene + 98714 100204 1491 Locate
trnI-GAU gene + 100503 101515 1013 Locate
trnA-UGC gene + 101580 102456 877 Locate
rrn23 gene + 102622 105432 2811 Locate
rrn4.5 gene + 105531 105633 103 Locate
rrn5 gene + 105889 106009 121 Locate
trnR-ACG gene + 106253 106326 74 Locate
trnN-GUU gene − 106846 106917 72 Locate
ycf1 gene + 107247 108302 1056 Locate
ndhF gene − 108271 110493 2223 Locate
rpl32 gene + 110950 111120 171 Locate
trnL-UAG gene + 111838 111917 80 Locate
ccsA gene + 112010 112987 978 Locate
ndhD gene − 113227 114768 1542 Locate
psaC gene − 114867 115112 246 Locate
ndhE gene − 115363 115668 306 Locate
ndhG gene − 115889 116419 531 Locate
ndhI gene − 116803 117309 507 Locate
ndhA gene − 117390 119488 2099 Locate
ndhH gene − 119490 120671 1182 Locate
rps15 gene − 120771 121043 273 Locate
ycf1 gene − 121451 126985 5535 Locate
trnN-GUU gene + 127315 127386 72 Locate
trnR-ACG gene − 127906 127979 74 Locate
rrn5 gene − 128223 128343 121 Locate
rrn4.5 gene − 128599 128701 103 Locate
rrn23 gene − 128800 131610 2811 Locate
trnA-UGC gene − 131776 132652 877 Locate
trnI-GAU gene − 132717 133729 1013 Locate
rrn16 gene − 134028 135518 1491 Locate
trnV-GAC gene − 135745 135816 72 Locate
rps12 gene + 137431 138214 784 Locate
rps7 gene + 138268 138735 468 Locate
ndhB gene + 139064 141217 2154 Locate
trnL-CAA gene + 141777 141857 81 Locate
ycf15 gene − 142118 142366 249 Locate
ycf2 gene − 142457 149272 6816 Locate
trnI-CAU gene + 149361 149434 74 Locate
rpl23 gene + 149600 149881 282 Locate
rpl2 gene + 149900 151382 1483 Locate
rps19 gene + 151442 151484 43 Locate
Status Available
Accession MT156377.1
Length 151,484 bp
GC content 38.0%
Annotated genes 134
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 27 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 0
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources