Salvia officinalis chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
LSC
IR
SSC
IR
trnH-GUG · NC_038165.1 · 11–85 bp · −
psbA · NC_038165.1 · 414–1,472 bp · −
trnK-UUU · NC_038165.1 · 1,704–4,284 bp · −
matK · NC_038165.1 · 2,016–3,545 bp · −
rps16 · NC_038165.1 · 4,855–5,964 bp · −
trnQ-UUG · NC_038165.1 · 6,518–6,589 bp · −
trnS-GCU · NC_038165.1 · 7,821–7,908 bp · −
atpA · NC_038165.1 · 9,729–11,252 bp · −
atpF · NC_038165.1 · 11,348–12,600 bp · −
atpH · NC_038165.1 · 12,881–13,126 bp · −
atpI · NC_038165.1 · 14,161–14,904 bp · −
rps2 · NC_038165.1 · 15,129–15,839 bp · −
rpoC2 · NC_038165.1 · 16,049–20,230 bp · −
rpoC1 · NC_038165.1 · 20,395–23,232 bp · −
rpoB · NC_038165.1 · 23,238–26,450 bp · −
psbM · NC_038165.1 · 28,860–28,964 bp · −
trnD-GUC · NC_038165.1 · 29,483–29,556 bp · −
trnY-GUA · NC_038165.1 · 29,667–29,750 bp · −
trnE-UUC · NC_038165.1 · 29,821–29,893 bp · −
trnS-UGA · NC_038165.1 · 34,559–34,651 bp · −
trnfM-CAU · NC_038165.1 · 35,707–35,780 bp · −
rps14 · NC_038165.1 · 35,939–36,241 bp · −
psaB · NC_038165.1 · 36,364–38,568 bp · −
psaA · NC_038165.1 · 38,594–40,846 bp · −
ycf3 · NC_038165.1 · 41,632–43,581 bp · −
rps4 · NC_038165.1 · 44,484–45,089 bp · −
trnT-UGU · NC_038165.1 · 45,440–45,512 bp · −
ndhJ · NC_038165.1 · 47,773–48,249 bp · −
ndhK · NC_038165.1 · 48,360–49,037 bp · −
ndhC · NC_038165.1 · 49,089–49,451 bp · −
trnV-UAC · NC_038165.1 · 50,411–51,064 bp · −
atpE · NC_038165.1 · 51,528–51,929 bp · −
atpB · NC_038165.1 · 51,926–53,422 bp · −
psbJ · NC_038165.1 · 62,874–62,996 bp · −
psbL · NC_038165.1 · 63,126–63,242 bp · −
psbF · NC_038165.1 · 63,266–63,385 bp · −
psbE · NC_038165.1 · 63,400–63,651 bp · −
trnW-CCA · NC_038165.1 · 65,049–65,122 bp · −
trnP-UGG · NC_038165.1 · 65,298–65,371 bp · −
rpl20 · NC_038165.1 · 67,141–67,527 bp · −
rps12 · NC_038165.1 · 68,310–68,435 bp · −
rps12 · NC_038165.1 · 95,692–96,485 bp · −
clpP · NC_038165.1 · 68,558–70,482 bp · −
psbN · NC_038165.1 · 72,813–72,944 bp · −
rpoA · NC_038165.1 · 76,325–77,332 bp · −
rps11 · NC_038165.1 · 77,403–77,819 bp · −
rpl36 · NC_038165.1 · 77,929–78,042 bp · −
infA · NC_038165.1 · 78,138–78,371 bp · −
rps8 · NC_038165.1 · 78,492–78,896 bp · −
rpl14 · NC_038165.1 · 79,080–79,448 bp · −
rpl16 · NC_038165.1 · 79,578–80,845 bp · −
rps3 · NC_038165.1 · 80,988–81,650 bp · −
rpl22 · NC_038165.1 · 81,635–82,102 bp · −
rps19 · NC_038165.1 · 82,172–82,450 bp · −
rpl2 · NC_038165.1 · 82,511–83,998 bp · −
rpl23 · NC_038165.1 · 84,017–84,298 bp · −
trnI-CAU · NC_038165.1 · 84,464–84,537 bp · −
trnL-CAA · NC_038165.1 · 92,056–92,136 bp · −
ndhB · NC_038165.1 · 92,689–94,896 bp · −
rps7 · NC_038165.1 · 95,171–95,638 bp · −
trnN-GUU · NC_038165.1 · 106,538–106,609 bp · −
ndhF · NC_038165.1 · 107,963–110,194 bp · −
ndhD · NC_038165.1 · 112,897–114,438 bp · −
psaC · NC_038165.1 · 114,530–114,775 bp · −
ndhE · NC_038165.1 · 115,026–115,331 bp · −
ndhG · NC_038165.1 · 115,507–116,037 bp · −
ndhI · NC_038165.1 · 116,404–116,910 bp · −
ndhA · NC_038165.1 · 116,991–119,089 bp · −
ndhH · NC_038165.1 · 119,091–120,272 bp · −
rps15 · NC_038165.1 · 120,372–120,644 bp · −
ycf1 · NC_038165.1 · 121,027–126,558 bp · −
trnR-ACG · NC_038165.1 · 127,484–127,557 bp · −
rrn5 · NC_038165.1 · 127,801–127,921 bp · −
rrn4.5 · NC_038165.1 · 128,171–128,273 bp · −
rrn23 · NC_038165.1 · 128,372–131,182 bp · −
trnA-UGC · NC_038165.1 · 131,348–132,225 bp · −
trnI-GAU · NC_038165.1 · 132,290–133,309 bp · −
rrn16 · NC_038165.1 · 133,608–135,098 bp · −
trnV-GAC · NC_038165.1 · 135,325–135,396 bp · −
ycf15 · NC_038165.1 · 141,702–141,950 bp · −
ycf2 · NC_038165.1 · 142,041–148,871 bp · −
psbK · NC_038165.1 · 6,976–7,155 bp · +
psbI · NC_038165.1 · 7,555–7,665 bp · +
trnG-UCC · NC_038165.1 · 8,616–9,371 bp · +
trnR-UCU · NC_038165.1 · 9,551–9,622 bp · +
trnC-GCA · NC_038165.1 · 27,590–27,660 bp · +
petN · NC_038165.1 · 27,824–27,913 bp · +
trnT-GGU · NC_038165.1 · 30,461–30,532 bp · +
psbD · NC_038165.1 · 31,884–32,945 bp · +
psbC · NC_038165.1 · 32,893–34,314 bp · +
psbZ · NC_038165.1 · 34,997–35,185 bp · +
trnG-GCC · NC_038165.1 · 35,463–35,533 bp · +
trnS-GGA · NC_038165.1 · 44,141–44,227 bp · +
trnL-UAA · NC_038165.1 · 46,197–46,767 bp · +
trnF-GAA · NC_038165.1 · 47,057–47,129 bp · +
trnM-CAU · NC_038165.1 · 51,245–51,317 bp · +
rbcL · NC_038165.1 · 54,214–55,647 bp · +
accD · NC_038165.1 · 56,344–57,804 bp · +
psaI · NC_038165.1 · 58,273–58,383 bp · +
ycf4 · NC_038165.1 · 58,816–59,370 bp · +
cemA · NC_038165.1 · 60,025–60,714 bp · +
petA · NC_038165.1 · 60,922–61,884 bp · +
petL · NC_038165.1 · 64,545–64,640 bp · +
petG · NC_038165.1 · 64,820–64,933 bp · +
psaJ · NC_038165.1 · 65,648–65,782 bp · +
rpl33 · NC_038165.1 · 66,227–66,427 bp · +
rps18 · NC_038165.1 · 66,598–66,903 bp · +
rps12 · NC_038165.1 · 137,012–137,805 bp · +
psbB · NC_038165.1 · 70,936–72,462 bp · +
psbT · NC_038165.1 · 72,645–72,752 bp · +
psbH · NC_038165.1 · 73,050–73,271 bp · +
petB · NC_038165.1 · 73,397–74,773 bp · +
petD · NC_038165.1 · 74,957–76,148 bp · +
ycf2 · NC_038165.1 · 84,626–91,456 bp · +
ycf15 · NC_038165.1 · 91,547–91,795 bp · +
trnV-GAC · NC_038165.1 · 98,101–98,172 bp · +
rrn16 · NC_038165.1 · 98,399–99,889 bp · +
trnI-GAU · NC_038165.1 · 100,188–101,207 bp · +
trnA-UGC · NC_038165.1 · 101,272–102,149 bp · +
rrn23 · NC_038165.1 · 102,315–105,125 bp · +
rrn4.5 · NC_038165.1 · 105,224–105,326 bp · +
rrn5 · NC_038165.1 · 105,576–105,696 bp · +
trnR-ACG · NC_038165.1 · 105,940–106,013 bp · +
rpl32 · NC_038165.1 · 110,641–110,802 bp · +
trnL-UAG · NC_038165.1 · 111,514–111,593 bp · +
ccsA · NC_038165.1 · 111,690–112,661 bp · +
trnN-GUU · NC_038165.1 · 126,888–126,959 bp · +
rps7 · NC_038165.1 · 137,859–138,326 bp · +
ndhB · NC_038165.1 · 138,601–140,808 bp · +
trnL-CAA · NC_038165.1 · 141,361–141,441 bp · +
trnI-CAU · NC_038165.1 · 148,960–149,033 bp · +
rpl23 · NC_038165.1 · 149,199–149,480 bp · +
rpl2 · NC_038165.1 · 149,499–150,986 bp · +
rps19 · NC_038165.1 · 151,047–151,089 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Salvia officinalis
ANNOTATED PLASTOME
NC_038165.1
151,089 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37772 75544 113317 151089 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2 rps19
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 11 85 75 Locate
psbA gene − 414 1472 1059 Locate
trnK-UUU gene − 1704 4284 2581 Locate
matK gene − 2016 3545 1530 Locate
rps16 gene − 4855 5964 1110 Locate
trnQ-UUG gene − 6518 6589 72 Locate
psbK gene + 6976 7155 180 Locate
psbI gene + 7555 7665 111 Locate
trnS-GCU gene − 7821 7908 88 Locate
trnG-UCC gene + 8616 9371 756 Locate
trnR-UCU gene + 9551 9622 72 Locate
atpA gene − 9729 11252 1524 Locate
atpF gene − 11348 12600 1253 Locate
atpH gene − 12881 13126 246 Locate
atpI gene − 14161 14904 744 Locate
rps2 gene − 15129 15839 711 Locate
rpoC2 gene − 16049 20230 4182 Locate
rpoC1 gene − 20395 23232 2838 Locate
rpoB gene − 23238 26450 3213 Locate
trnC-GCA gene + 27590 27660 71 Locate
petN gene + 27824 27913 90 Locate
psbM gene − 28860 28964 105 Locate
trnD-GUC gene − 29483 29556 74 Locate
trnY-GUA gene − 29667 29750 84 Locate
trnE-UUC gene − 29821 29893 73 Locate
trnT-GGU gene + 30461 30532 72 Locate
psbD gene + 31884 32945 1062 Locate
psbC gene + 32893 34314 1422 Locate
trnS-UGA gene − 34559 34651 93 Locate
psbZ gene + 34997 35185 189 Locate
trnG-GCC gene + 35463 35533 71 Locate
trnfM-CAU gene − 35707 35780 74 Locate
rps14 gene − 35939 36241 303 Locate
psaB gene − 36364 38568 2205 Locate
psaA gene − 38594 40846 2253 Locate
ycf3 gene − 41632 43581 1950 Locate
trnS-GGA gene + 44141 44227 87 Locate
rps4 gene − 44484 45089 606 Locate
trnT-UGU gene − 45440 45512 73 Locate
trnL-UAA gene + 46197 46767 571 Locate
trnF-GAA gene + 47057 47129 73 Locate
ndhJ gene − 47773 48249 477 Locate
ndhK gene − 48360 49037 678 Locate
ndhC gene − 49089 49451 363 Locate
trnV-UAC gene − 50411 51064 654 Locate
trnM-CAU gene + 51245 51317 73 Locate
atpE gene − 51528 51929 402 Locate
atpB gene − 51926 53422 1497 Locate
rbcL gene + 54214 55647 1434 Locate
accD gene + 56344 57804 1461 Locate
psaI gene + 58273 58383 111 Locate
ycf4 gene + 58816 59370 555 Locate
cemA gene + 60025 60714 690 Locate
petA gene + 60922 61884 963 Locate
psbJ gene − 62874 62996 123 Locate
psbL gene − 63126 63242 117 Locate
psbF gene − 63266 63385 120 Locate
psbE gene − 63400 63651 252 Locate
petL gene + 64545 64640 96 Locate
petG gene + 64820 64933 114 Locate
trnW-CCA gene − 65049 65122 74 Locate
trnP-UGG gene − 65298 65371 74 Locate
psaJ gene + 65648 65782 135 Locate
rpl33 gene + 66227 66427 201 Locate
rps18 gene + 66598 66903 306 Locate
rpl20 gene − 67141 67527 387 Locate
rps12 gene − 68310 68435 126 Locate
clpP gene − 68558 70482 1925 Locate
psbB gene + 70936 72462 1527 Locate
psbT gene + 72645 72752 108 Locate
psbN gene − 72813 72944 132 Locate
psbH gene + 73050 73271 222 Locate
petB gene + 73397 74773 1377 Locate
petD gene + 74957 76148 1192 Locate
rpoA gene − 76325 77332 1008 Locate
rps11 gene − 77403 77819 417 Locate
rpl36 gene − 77929 78042 114 Locate
infA gene − 78138 78371 234 Locate
rps8 gene − 78492 78896 405 Locate
rpl14 gene − 79080 79448 369 Locate
rpl16 gene − 79578 80845 1268 Locate
rps3 gene − 80988 81650 663 Locate
rpl22 gene − 81635 82102 468 Locate
rps19 gene − 82172 82450 279 Locate
rpl2 gene − 82511 83998 1488 Locate
rpl23 gene − 84017 84298 282 Locate
trnI-CAU gene − 84464 84537 74 Locate
ycf2 gene + 84626 91456 6831 Locate
ycf15 gene + 91547 91795 249 Locate
trnL-CAA gene − 92056 92136 81 Locate
ndhB gene − 92689 94896 2208 Locate
rps7 gene − 95171 95638 468 Locate
rps12 gene − 95692 96485 794 Locate
trnV-GAC gene + 98101 98172 72 Locate
rrn16 gene + 98399 99889 1491 Locate
trnI-GAU gene + 100188 101207 1020 Locate
trnA-UGC gene + 101272 102149 878 Locate
rrn23 gene + 102315 105125 2811 Locate
rrn4.5 gene + 105224 105326 103 Locate
rrn5 gene + 105576 105696 121 Locate
trnR-ACG gene + 105940 106013 74 Locate
trnN-GUU gene − 106538 106609 72 Locate
ndhF gene − 107963 110194 2232 Locate
rpl32 gene + 110641 110802 162 Locate
trnL-UAG gene + 111514 111593 80 Locate
ccsA gene + 111690 112661 972 Locate
ndhD gene − 112897 114438 1542 Locate
psaC gene − 114530 114775 246 Locate
ndhE gene − 115026 115331 306 Locate
ndhG gene − 115507 116037 531 Locate
ndhI gene − 116404 116910 507 Locate
ndhA gene − 116991 119089 2099 Locate
ndhH gene − 119091 120272 1182 Locate
rps15 gene − 120372 120644 273 Locate
ycf1 gene − 121027 126558 5532 Locate
trnN-GUU gene + 126888 126959 72 Locate
trnR-ACG gene − 127484 127557 74 Locate
rrn5 gene − 127801 127921 121 Locate
rrn4.5 gene − 128171 128273 103 Locate
rrn23 gene − 128372 131182 2811 Locate
trnA-UGC gene − 131348 132225 878 Locate
trnI-GAU gene − 132290 133309 1020 Locate
rrn16 gene − 133608 135098 1491 Locate
trnV-GAC gene − 135325 135396 72 Locate
rps12 gene + 137012 137805 794 Locate
rps7 gene + 137859 138326 468 Locate
ndhB gene + 138601 140808 2208 Locate
trnL-CAA gene + 141361 141441 81 Locate
ycf15 gene − 141702 141950 249 Locate
ycf2 gene − 142041 148871 6831 Locate
trnI-CAU gene + 148960 149033 74 Locate
rpl23 gene + 149199 149480 282 Locate
rpl2 gene + 149499 150986 1488 Locate
rps19 gene + 151047 151089 43 Locate
Status Available
Accession NC_038165.1
Length 151,089 bp
GC content 38.0%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 14 Ribosomal Protein 27 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources