Salvia oxyphora chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
trnH-GUG · MT156374.1 · 2–75 bp · −
psbA · MT156374.1 · 415–1,473 bp · −
trnK-UUU · MT156374.1 · 1,705–4,270 bp · −
matK · MT156374.1 · 2,009–3,532 bp · −
rps16 · MT156374.1 · 4,841–5,939 bp · −
trnQ-UUG · MT156374.1 · 6,714–6,785 bp · −
trnS-GCU · MT156374.1 · 8,015–8,102 bp · −
atpA · MT156374.1 · 9,923–11,446 bp · −
atpF · MT156374.1 · 11,544–12,803 bp · −
atpH · MT156374.1 · 13,077–13,322 bp · −
atpI · MT156374.1 · 14,334–15,077 bp · −
rps2 · MT156374.1 · 15,301–16,011 bp · −
rpoC2 · MT156374.1 · 16,213–20,400 bp · −
rpoC1 · MT156374.1 · 20,567–23,399 bp · −
rpoB · MT156374.1 · 23,405–26,617 bp · −
psbM · MT156374.1 · 29,078–29,182 bp · −
trnD-GUC · MT156374.1 · 29,553–29,626 bp · −
trnY-GUA · MT156374.1 · 29,739–29,822 bp · −
trnE-UUC · MT156374.1 · 29,892–29,964 bp · −
trnS-UGA · MT156374.1 · 34,619–34,711 bp · −
trnfM-CAU · MT156374.1 · 35,732–35,805 bp · −
rps14 · MT156374.1 · 35,950–36,252 bp · −
psaB · MT156374.1 · 36,375–38,579 bp · −
psaA · MT156374.1 · 38,605–40,857 bp · −
ycf3 · MT156374.1 · 41,588–43,520 bp · −
rps4 · MT156374.1 · 44,710–45,315 bp · −
trnT-UGU · MT156374.1 · 45,676–45,748 bp · −
ndhJ · MT156374.1 · 47,820–48,296 bp · −
ndhK · MT156374.1 · 48,407–49,084 bp · −
ndhC · MT156374.1 · 49,136–49,498 bp · −
trnV-UAC · MT156374.1 · 50,303–50,948 bp · −
atpE · MT156374.1 · 51,391–51,792 bp · −
atpB · MT156374.1 · 51,789–53,285 bp · −
psbJ · MT156374.1 · 62,757–62,879 bp · −
psbL · MT156374.1 · 63,009–63,125 bp · −
psbF · MT156374.1 · 63,149–63,268 bp · −
psbE · MT156374.1 · 63,283–63,534 bp · −
trnW-CCA · MT156374.1 · 64,936–65,009 bp · −
trnP-UGG · MT156374.1 · 65,184–65,257 bp · −
rpl20 · MT156374.1 · 67,021–67,407 bp · −
rps12 · MT156374.1 · 68,215–68,328 bp · −
rps12 · MT156374.1 · 95,579–96,372 bp · −
clpP · MT156374.1 · 68,452–70,361 bp · −
psbN · MT156374.1 · 72,690–72,821 bp · −
rpoA · MT156374.1 · 76,193–77,200 bp · −
rps11 · MT156374.1 · 77,270–77,686 bp · −
rpl36 · MT156374.1 · 77,798–77,911 bp · −
infA · MT156374.1 · 78,007–78,240 bp · −
rps8 · MT156374.1 · 78,362–78,766 bp · −
rpl14 · MT156374.1 · 78,938–79,306 bp · −
rpl16 · MT156374.1 · 79,437–80,712 bp · −
rps3 · MT156374.1 · 80,855–81,517 bp · −
rpl22 · MT156374.1 · 81,502–81,969 bp · −
rps19 · MT156374.1 · 82,039–82,317 bp · −
rpl2 · MT156374.1 · 82,378–83,869 bp · −
rpl23 · MT156374.1 · 83,888–84,169 bp · −
trnI-CAU · MT156374.1 · 84,335–84,408 bp · −
trnL-CAA · MT156374.1 · 91,936–92,016 bp · −
ndhB · MT156374.1 · 92,576–94,729 bp · −
rps7 · MT156374.1 · 95,058–95,525 bp · −
trnN-GUU · MT156374.1 · 106,438–106,509 bp · −
ndhF · MT156374.1 · 107,857–110,088 bp · −
ndhD · MT156374.1 · 112,755–114,296 bp · −
psaC · MT156374.1 · 114,391–114,636 bp · −
ndhE · MT156374.1 · 114,887–115,192 bp · −
ndhG · MT156374.1 · 115,405–115,935 bp · −
ndhI · MT156374.1 · 116,301–116,807 bp · −
ndhA · MT156374.1 · 116,888–118,989 bp · −
ndhH · MT156374.1 · 118,991–120,172 bp · −
rps15 · MT156374.1 · 120,272–120,544 bp · −
ycf1 · MT156374.1 · 120,950–126,469 bp · −
trnR-ACG · MT156374.1 · 127,369–127,442 bp · −
rrn5 · MT156374.1 · 127,686–127,806 bp · −
rrn4.5 · MT156374.1 · 128,062–128,164 bp · −
rrn23 · MT156374.1 · 128,263–131,073 bp · −
trnA-UGC · MT156374.1 · 131,239–132,115 bp · −
trnI-GAU · MT156374.1 · 132,180–133,198 bp · −
rrn16 · MT156374.1 · 133,497–134,987 bp · −
trnV-GAC · MT156374.1 · 135,214–135,285 bp · −
ycf15 · MT156374.1 · 141,633–141,881 bp · −
ycf2 · MT156374.1 · 141,972–148,811 bp · −
psbK · MT156374.1 · 7,175–7,360 bp · +
psbI · MT156374.1 · 7,755–7,865 bp · +
trnG-UCC · MT156374.1 · 8,803–9,564 bp · +
trnR-UCU · MT156374.1 · 9,741–9,812 bp · +
trnC-GCA · MT156374.1 · 27,780–27,850 bp · +
petN · MT156374.1 · 28,006–28,095 bp · +
trnT-GGU · MT156374.1 · 30,506–30,577 bp · +
psbD · MT156374.1 · 31,950–33,011 bp · +
psbC · MT156374.1 · 32,959–34,380 bp · +
psbZ · MT156374.1 · 35,039–35,227 bp · +
trnG-GCC · MT156374.1 · 35,505–35,575 bp · +
trnS-GGA · MT156374.1 · 44,346–44,432 bp · +
trnL-UAA · MT156374.1 · 46,409–46,983 bp · +
trnF-GAA · MT156374.1 · 47,271–47,343 bp · +
trnM-CAU · MT156374.1 · 51,129–51,201 bp · +
rbcL · MT156374.1 · 54,087–55,520 bp · +
accD · MT156374.1 · 56,192–57,661 bp · +
psaI · MT156374.1 · 58,125–58,235 bp · +
ycf4 · MT156374.1 · 58,680–59,234 bp · +
cemA · MT156374.1 · 59,876–60,565 bp · +
petA · MT156374.1 · 60,787–61,749 bp · +
petL · MT156374.1 · 64,434–64,529 bp · +
petG · MT156374.1 · 64,708–64,821 bp · +
psaJ · MT156374.1 · 65,534–65,668 bp · +
rpl33 · MT156374.1 · 66,107–66,307 bp · +
rps18 · MT156374.1 · 66,480–66,785 bp · +
rps12 · MT156374.1 · 136,936–137,729 bp · +
psbB · MT156374.1 · 70,806–72,332 bp · +
psbT · MT156374.1 · 72,523–72,624 bp · +
psbH · MT156374.1 · 72,927–73,148 bp · +
petB · MT156374.1 · 73,282–74,645 bp · +
petD · MT156374.1 · 74,833–76,016 bp · +
ycf2 · MT156374.1 · 84,497–91,336 bp · +
ycf15 · MT156374.1 · 91,427–91,675 bp · +
trnV-GAC · MT156374.1 · 98,023–98,094 bp · +
rrn16 · MT156374.1 · 98,321–99,811 bp · +
trnI-GAU · MT156374.1 · 100,110–101,128 bp · +
trnA-UGC · MT156374.1 · 101,193–102,069 bp · +
rrn23 · MT156374.1 · 102,235–105,045 bp · +
rrn4.5 · MT156374.1 · 105,144–105,246 bp · +
rrn5 · MT156374.1 · 105,502–105,622 bp · +
trnR-ACG · MT156374.1 · 105,866–105,939 bp · +
ycf1 · MT156374.1 · 106,839–107,888 bp · +
rpl32 · MT156374.1 · 110,546–110,716 bp · +
trnL-UAG · MT156374.1 · 111,363–111,442 bp · +
ccsA · MT156374.1 · 111,539–112,516 bp · +
trnN-GUU · MT156374.1 · 126,799–126,870 bp · +
rps7 · MT156374.1 · 137,783–138,250 bp · +
ndhB · MT156374.1 · 138,579–140,732 bp · +
trnL-CAA · MT156374.1 · 141,292–141,372 bp · +
trnI-CAU · MT156374.1 · 148,900–148,973 bp · +
rpl23 · MT156374.1 · 149,139–149,420 bp · +
rpl2 · MT156374.1 · 149,439–150,930 bp · +
rps19 · MT156374.1 · 150,991–151,014 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Salvia oxyphora
ANNOTATED PLASTOME
MT156374.1
151,014 bp · 134 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37754 75507 113260 151014 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2 rps19
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
135 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 2 75 74 Locate
psbA gene − 415 1473 1059 Locate
trnK-UUU gene − 1705 4270 2566 Locate
matK gene − 2009 3532 1524 Locate
rps16 gene − 4841 5939 1099 Locate
trnQ-UUG gene − 6714 6785 72 Locate
psbK gene + 7175 7360 186 Locate
psbI gene + 7755 7865 111 Locate
trnS-GCU gene − 8015 8102 88 Locate
trnG-UCC gene + 8803 9564 762 Locate
trnR-UCU gene + 9741 9812 72 Locate
atpA gene − 9923 11446 1524 Locate
atpF gene − 11544 12803 1260 Locate
atpH gene − 13077 13322 246 Locate
atpI gene − 14334 15077 744 Locate
rps2 gene − 15301 16011 711 Locate
rpoC2 gene − 16213 20400 4188 Locate
rpoC1 gene − 20567 23399 2833 Locate
rpoB gene − 23405 26617 3213 Locate
trnC-GCA gene + 27780 27850 71 Locate
petN gene + 28006 28095 90 Locate
psbM gene − 29078 29182 105 Locate
trnD-GUC gene − 29553 29626 74 Locate
trnY-GUA gene − 29739 29822 84 Locate
trnE-UUC gene − 29892 29964 73 Locate
trnT-GGU gene + 30506 30577 72 Locate
psbD gene + 31950 33011 1062 Locate
psbC gene + 32959 34380 1422 Locate
trnS-UGA gene − 34619 34711 93 Locate
psbZ gene + 35039 35227 189 Locate
trnG-GCC gene + 35505 35575 71 Locate
trnfM-CAU gene − 35732 35805 74 Locate
rps14 gene − 35950 36252 303 Locate
psaB gene − 36375 38579 2205 Locate
psaA gene − 38605 40857 2253 Locate
ycf3 gene − 41588 43520 1933 Locate
trnS-GGA gene + 44346 44432 87 Locate
rps4 gene − 44710 45315 606 Locate
trnT-UGU gene − 45676 45748 73 Locate
trnL-UAA gene + 46409 46983 575 Locate
trnF-GAA gene + 47271 47343 73 Locate
ndhJ gene − 47820 48296 477 Locate
ndhK gene − 48407 49084 678 Locate
ndhC gene − 49136 49498 363 Locate
trnV-UAC gene − 50303 50948 646 Locate
trnM-CAU gene + 51129 51201 73 Locate
atpE gene − 51391 51792 402 Locate
atpB gene − 51789 53285 1497 Locate
rbcL gene + 54087 55520 1434 Locate
accD gene + 56192 57661 1470 Locate
psaI gene + 58125 58235 111 Locate
ycf4 gene + 58680 59234 555 Locate
cemA gene + 59876 60565 690 Locate
petA gene + 60787 61749 963 Locate
psbJ gene − 62757 62879 123 Locate
psbL gene − 63009 63125 117 Locate
psbF gene − 63149 63268 120 Locate
psbE gene − 63283 63534 252 Locate
petL gene + 64434 64529 96 Locate
petG gene + 64708 64821 114 Locate
trnW-CCA gene − 64936 65009 74 Locate
trnP-UGG gene − 65184 65257 74 Locate
psaJ gene + 65534 65668 135 Locate
rpl33 gene + 66107 66307 201 Locate
rps18 gene + 66480 66785 306 Locate
rpl20 gene − 67021 67407 387 Locate
rps12 gene − 68215 68328 114 Locate
clpP gene − 68452 70361 1910 Locate
psbB gene + 70806 72332 1527 Locate
psbT gene + 72523 72624 102 Locate
psbN gene − 72690 72821 132 Locate
psbH gene + 72927 73148 222 Locate
petB gene + 73282 74645 1364 Locate
petD gene + 74833 76016 1184 Locate
rpoA gene − 76193 77200 1008 Locate
rps11 gene − 77270 77686 417 Locate
rpl36 gene − 77798 77911 114 Locate
infA gene − 78007 78240 234 Locate
rps8 gene − 78362 78766 405 Locate
rpl14 gene − 78938 79306 369 Locate
rpl16 gene − 79437 80712 1276 Locate
rps3 gene − 80855 81517 663 Locate
rpl22 gene − 81502 81969 468 Locate
rps19 gene − 82039 82317 279 Locate
rpl2 gene − 82378 83869 1492 Locate
rpl23 gene − 83888 84169 282 Locate
trnI-CAU gene − 84335 84408 74 Locate
ycf2 gene + 84497 91336 6840 Locate
ycf15 gene + 91427 91675 249 Locate
trnL-CAA gene − 91936 92016 81 Locate
ndhB gene − 92576 94729 2154 Locate
rps7 gene − 95058 95525 468 Locate
rps12 gene − 95579 96372 794 Locate
trnV-GAC gene + 98023 98094 72 Locate
rrn16 gene + 98321 99811 1491 Locate
trnI-GAU gene + 100110 101128 1019 Locate
trnA-UGC gene + 101193 102069 877 Locate
rrn23 gene + 102235 105045 2811 Locate
rrn4.5 gene + 105144 105246 103 Locate
rrn5 gene + 105502 105622 121 Locate
trnR-ACG gene + 105866 105939 74 Locate
trnN-GUU gene − 106438 106509 72 Locate
ycf1 gene + 106839 107888 1050 Locate
ndhF gene − 107857 110088 2232 Locate
rpl32 gene + 110546 110716 171 Locate
trnL-UAG gene + 111363 111442 80 Locate
ccsA gene + 111539 112516 978 Locate
ndhD gene − 112755 114296 1542 Locate
psaC gene − 114391 114636 246 Locate
ndhE gene − 114887 115192 306 Locate
ndhG gene − 115405 115935 531 Locate
ndhI gene − 116301 116807 507 Locate
ndhA gene − 116888 118989 2102 Locate
ndhH gene − 118991 120172 1182 Locate
rps15 gene − 120272 120544 273 Locate
ycf1 gene − 120950 126469 5520 Locate
trnN-GUU gene + 126799 126870 72 Locate
trnR-ACG gene − 127369 127442 74 Locate
rrn5 gene − 127686 127806 121 Locate
rrn4.5 gene − 128062 128164 103 Locate
rrn23 gene − 128263 131073 2811 Locate
trnA-UGC gene − 131239 132115 877 Locate
trnI-GAU gene − 132180 133198 1019 Locate
rrn16 gene − 133497 134987 1491 Locate
trnV-GAC gene − 135214 135285 72 Locate
rps12 gene + 136936 137729 794 Locate
rps7 gene + 137783 138250 468 Locate
ndhB gene + 138579 140732 2154 Locate
trnL-CAA gene + 141292 141372 81 Locate
ycf15 gene − 141633 141881 249 Locate
ycf2 gene − 141972 148811 6840 Locate
trnI-CAU gene + 148900 148973 74 Locate
rpl23 gene + 149139 149420 282 Locate
rpl2 gene + 149439 150930 1492 Locate
rps19 gene + 150991 151014 24 Locate
Status Available
Accession MT156374.1
Length 151,014 bp
GC content 38.0%
Annotated genes 134
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 27 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 0
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources