Salvia plectranthoides chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · MW435409.1 · 11–84 bp · −
psbA · MW435409.1 · 392–1,450 bp · −
trnK-UUU · MW435409.1 · 1,672–4,266 bp · −
matK · MW435409.1 · 1,972–3,534 bp · −
rps16 · MW435409.1 · 4,835–5,945 bp · −
trnQ-UUG · MW435409.1 · 6,915–6,986 bp · −
trnS-GCU · MW435409.1 · 8,230–8,317 bp · −
ATPA · MW435409.1 · 10,121–11,644 bp · −
ATPF · MW435409.1 · 11,741–12,988 bp · −
ATPH · MW435409.1 · 13,262–13,507 bp · −
ATPI · MW435409.1 · 14,478–15,221 bp · −
rps2 · MW435409.1 · 15,448–16,158 bp · −
rpoC2 · MW435409.1 · 16,367–20,554 bp · −
rpoC1 · MW435409.1 · 20,712–23,525 bp · −
rpoB · MW435409.1 · 23,552–26,764 bp · −
psbM · MW435409.1 · 29,203–29,307 bp · −
trnD-GUC · MW435409.1 · 29,828–29,901 bp · −
trnY-GUA · MW435409.1 · 30,012–30,095 bp · −
trnE-UUC · MW435409.1 · 30,167–30,239 bp · −
trnS-UGA · MW435409.1 · 34,905–34,997 bp · −
trnfM-CAU · MW435409.1 · 36,042–36,115 bp · −
rps14 · MW435409.1 · 36,260–36,562 bp · −
psaB · MW435409.1 · 36,685–38,889 bp · −
psaA · MW435409.1 · 38,915–41,167 bp · −
ycf3 · MW435409.1 · 41,960–43,892 bp · −
rps4 · MW435409.1 · 45,072–45,677 bp · −
trnT-UGU · MW435409.1 · 46,049–46,121 bp · −
ndhJ · MW435409.1 · 48,240–48,716 bp · −
ndhK · MW435409.1 · 48,827–49,504 bp · −
ndhC · MW435409.1 · 49,556–49,918 bp · −
trnV-UAC · MW435409.1 · 50,868–51,516 bp · −
ATPE · MW435409.1 · 51,973–52,374 bp · −
ATPB · MW435409.1 · 52,371–53,867 bp · −
psbJ · MW435409.1 · 63,319–63,441 bp · −
psbL · MW435409.1 · 63,571–63,687 bp · −
psbF · MW435409.1 · 63,711–63,830 bp · −
psbE · MW435409.1 · 63,845–64,096 bp · −
trnW-CCA · MW435409.1 · 65,405–65,478 bp · −
trnP-UGG · MW435409.1 · 65,649–65,722 bp · −
rpl20 · MW435409.1 · 67,502–67,888 bp · −
rps12 · MW435409.1 · 68,700–68,813 bp · −
rps12 · MW435409.1 · 96,082–96,865 bp · −
clpP · MW435409.1 · 68,937–70,848 bp · −
psbN · MW435409.1 · 73,171–73,302 bp · −
rpoA · MW435409.1 · 76,678–77,685 bp · −
rps11 · MW435409.1 · 77,748–78,164 bp · −
rpl36 · MW435409.1 · 78,274–78,387 bp · −
infA · MW435409.1 · 78,483–78,716 bp · −
rps8 · MW435409.1 · 78,843–79,247 bp · −
rpl14 · MW435409.1 · 79,439–79,807 bp · −
rpl16 · MW435409.1 · 79,939–81,220 bp · −
rps3 · MW435409.1 · 81,356–82,018 bp · −
rpl22 · MW435409.1 · 82,003–82,470 bp · −
rps19 · MW435409.1 · 82,540–82,818 bp · −
rpl2 · MW435409.1 · 82,878–84,360 bp · −
rpl23 · MW435409.1 · 84,379–84,660 bp · −
trnI-CAU · MW435409.1 · 84,826–84,899 bp · −
trnL-CAA · MW435409.1 · 92,439–92,519 bp · −
ndhB · MW435409.1 · 93,079–95,232 bp · −
rps7 · MW435409.1 · 95,561–96,028 bp · −
trnN-GUU · MW435409.1 · 106,858–106,929 bp · −
ndhF · MW435409.1 · 108,283–110,517 bp · −
ndhD · MW435409.1 · 113,198–114,739 bp · −
psaC · MW435409.1 · 114,849–115,094 bp · −
ndhE · MW435409.1 · 115,345–115,647 bp · −
ndhG · MW435409.1 · 115,866–116,396 bp · −
ndhI · MW435409.1 · 116,773–117,279 bp · −
ndhA · MW435409.1 · 117,360–119,436 bp · −
ndhH · MW435409.1 · 119,438–120,673 bp · −
rps15 · MW435409.1 · 120,719–120,991 bp · −
ycf1 · MW435409.1 · 121,417–127,044 bp · −
trnR-ACG · MW435409.1 · 127,854–127,927 bp · −
rrn5 · MW435409.1 · 128,171–128,291 bp · −
rrn4.5 · MW435409.1 · 128,516–128,618 bp · −
rrn23 · MW435409.1 · 128,719–131,527 bp · −
trnA-UGC · MW435409.1 · 131,693–132,560 bp · −
trnI-GAU · MW435409.1 · 132,625–133,636 bp · −
rrn16 · MW435409.1 · 133,935–135,425 bp · −
trnV-GAC · MW435409.1 · 135,652–135,723 bp · −
ycf15 · MW435409.1 · 142,014–142,262 bp · −
ycf2 · MW435409.1 · 142,353–149,204 bp · −
psbK · MW435409.1 · 7,379–7,558 bp · +
psbI · MW435409.1 · 7,955–8,065 bp · +
trnG-UCC · MW435409.1 · 9,001–9,755 bp · +
trnR-UCU · MW435409.1 · 9,938–10,009 bp · +
trnC-GCA · MW435409.1 · 27,909–27,979 bp · +
petN · MW435409.1 · 28,142–28,231 bp · +
trnT-GGU · MW435409.1 · 30,778–30,849 bp · +
psbD · MW435409.1 · 32,229–33,290 bp · +
psbC · MW435409.1 · 33,238–34,659 bp · +
psbZ · MW435409.1 · 35,332–35,520 bp · +
trnG-GCC · MW435409.1 · 35,792–35,862 bp · +
trnS-GGA · MW435409.1 · 44,709–44,795 bp · +
trnL-UAA · MW435409.1 · 46,797–47,336 bp · +
trnF-GAA · MW435409.1 · 47,635–47,707 bp · +
trnM-CAU · MW435409.1 · 51,705–51,777 bp · +
rbcL · MW435409.1 · 54,631–56,085 bp · +
accD · MW435409.1 · 56,776–58,263 bp · +
psaI · MW435409.1 · 58,726–58,836 bp · +
ycf4 · MW435409.1 · 59,291–59,845 bp · +
cemA · MW435409.1 · 60,393–61,082 bp · +
petA · MW435409.1 · 61,295–62,257 bp · +
petL · MW435409.1 · 64,903–64,998 bp · +
petG · MW435409.1 · 65,177–65,290 bp · +
psaJ · MW435409.1 · 65,974–66,147 bp · +
rpl33 · MW435409.1 · 66,599–66,799 bp · +
rps18 · MW435409.1 · 66,965–67,270 bp · +
rps12 · MW435409.1 · 137,327–138,110 bp · +
psbB · MW435409.1 · 71,297–72,823 bp · +
psbT · MW435409.1 · 73,003–73,110 bp · +
psbH · MW435409.1 · 73,408–73,629 bp · +
petB · MW435409.1 · 73,755–75,105 bp · +
petD · MW435409.1 · 75,299–76,501 bp · +
ycf2 · MW435409.1 · 84,988–91,839 bp · +
ycf15 · MW435409.1 · 91,930–92,178 bp · +
trnV-GAC · MW435409.1 · 98,469–98,540 bp · +
rrn16 · MW435409.1 · 98,767–100,257 bp · +
trnI-GAU · MW435409.1 · 100,556–101,567 bp · +
trnA-UGC · MW435409.1 · 101,632–102,499 bp · +
rrn23 · MW435409.1 · 102,665–105,473 bp · +
rrn4.5 · MW435409.1 · 105,574–105,676 bp · +
rrn5 · MW435409.1 · 105,901–106,021 bp · +
trnR-ACG · MW435409.1 · 106,265–106,338 bp · +
rpl32 · MW435409.1 · 110,943–111,113 bp · +
trnL-UAG · MW435409.1 · 111,817–111,896 bp · +
ccsA · MW435409.1 · 111,941–112,966 bp · +
trnN-GUU · MW435409.1 · 127,263–127,334 bp · +
rps7 · MW435409.1 · 138,164–138,631 bp · +
ndhB · MW435409.1 · 138,960–141,113 bp · +
trnL-CAA · MW435409.1 · 141,673–141,753 bp · +
trnI-CAU · MW435409.1 · 149,293–149,366 bp · +
rpl23 · MW435409.1 · 149,532–149,813 bp · +
rpl2 · MW435409.1 · 149,832–151,314 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Salvia plectranthoides
ANNOTATED PLASTOME
MW435409.1
151,416 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37854 75708 113562 151416 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU ATPA ATPF ATPH ATPI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC ATPE ATPB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 11 84 74 Locate
psbA gene − 392 1450 1059 Locate
trnK-UUU gene − 1672 4266 2595 Locate
matK gene − 1972 3534 1563 Locate
rps16 gene − 4835 5945 1111 Locate
trnQ-UUG gene − 6915 6986 72 Locate
psbK gene + 7379 7558 180 Locate
psbI gene + 7955 8065 111 Locate
trnS-GCU gene − 8230 8317 88 Locate
trnG-UCC gene + 9001 9755 755 Locate
trnR-UCU gene + 9938 10009 72 Locate
ATPA gene − 10121 11644 1524 Locate
ATPF gene − 11741 12988 1248 Locate
ATPH gene − 13262 13507 246 Locate
ATPI gene − 14478 15221 744 Locate
rps2 gene − 15448 16158 711 Locate
rpoC2 gene − 16367 20554 4188 Locate
rpoC1 gene − 20712 23525 2814 Locate
rpoB gene − 23552 26764 3213 Locate
trnC-GCA gene + 27909 27979 71 Locate
petN gene + 28142 28231 90 Locate
psbM gene − 29203 29307 105 Locate
trnD-GUC gene − 29828 29901 74 Locate
trnY-GUA gene − 30012 30095 84 Locate
trnE-UUC gene − 30167 30239 73 Locate
trnT-GGU gene + 30778 30849 72 Locate
psbD gene + 32229 33290 1062 Locate
psbC gene + 33238 34659 1422 Locate
trnS-UGA gene − 34905 34997 93 Locate
psbZ gene + 35332 35520 189 Locate
trnG-GCC gene + 35792 35862 71 Locate
trnfM-CAU gene − 36042 36115 74 Locate
rps14 gene − 36260 36562 303 Locate
psaB gene − 36685 38889 2205 Locate
psaA gene − 38915 41167 2253 Locate
ycf3 gene − 41960 43892 1933 Locate
trnS-GGA gene + 44709 44795 87 Locate
rps4 gene − 45072 45677 606 Locate
trnT-UGU gene − 46049 46121 73 Locate
trnL-UAA gene + 46797 47336 540 Locate
trnF-GAA gene + 47635 47707 73 Locate
ndhJ gene − 48240 48716 477 Locate
ndhK gene − 48827 49504 678 Locate
ndhC gene − 49556 49918 363 Locate
trnV-UAC gene − 50868 51516 649 Locate
trnM-CAU gene + 51705 51777 73 Locate
ATPE gene − 51973 52374 402 Locate
ATPB gene − 52371 53867 1497 Locate
rbcL gene + 54631 56085 1455 Locate
accD gene + 56776 58263 1488 Locate
psaI gene + 58726 58836 111 Locate
ycf4 gene + 59291 59845 555 Locate
cemA gene + 60393 61082 690 Locate
petA gene + 61295 62257 963 Locate
psbJ gene − 63319 63441 123 Locate
psbL gene − 63571 63687 117 Locate
psbF gene − 63711 63830 120 Locate
psbE gene − 63845 64096 252 Locate
petL gene + 64903 64998 96 Locate
petG gene + 65177 65290 114 Locate
trnW-CCA gene − 65405 65478 74 Locate
trnP-UGG gene − 65649 65722 74 Locate
psaJ gene + 65974 66147 174 Locate
rpl33 gene + 66599 66799 201 Locate
rps18 gene + 66965 67270 306 Locate
rpl20 gene − 67502 67888 387 Locate
rps12 gene − 68700 68813 114 Locate
clpP gene − 68937 70848 1912 Locate
psbB gene + 71297 72823 1527 Locate
psbT gene + 73003 73110 108 Locate
psbN gene − 73171 73302 132 Locate
psbH gene + 73408 73629 222 Locate
petB gene + 73755 75105 1351 Locate
petD gene + 75299 76501 1203 Locate
rpoA gene − 76678 77685 1008 Locate
rps11 gene − 77748 78164 417 Locate
rpl36 gene − 78274 78387 114 Locate
infA gene − 78483 78716 234 Locate
rps8 gene − 78843 79247 405 Locate
rpl14 gene − 79439 79807 369 Locate
rpl16 gene − 79939 81220 1282 Locate
rps3 gene − 81356 82018 663 Locate
rpl22 gene − 82003 82470 468 Locate
rps19 gene − 82540 82818 279 Locate
rpl2 gene − 82878 84360 1483 Locate
rpl23 gene − 84379 84660 282 Locate
trnI-CAU gene − 84826 84899 74 Locate
ycf2 gene + 84988 91839 6852 Locate
ycf15 gene + 91930 92178 249 Locate
trnL-CAA gene − 92439 92519 81 Locate
ndhB gene − 93079 95232 2154 Locate
rps7 gene − 95561 96028 468 Locate
rps12 gene − 96082 96865 784 Locate
trnV-GAC gene + 98469 98540 72 Locate
rrn16 gene + 98767 100257 1491 Locate
trnI-GAU gene + 100556 101567 1012 Locate
trnA-UGC gene + 101632 102499 868 Locate
rrn23 gene + 102665 105473 2809 Locate
rrn4.5 gene + 105574 105676 103 Locate
rrn5 gene + 105901 106021 121 Locate
trnR-ACG gene + 106265 106338 74 Locate
trnN-GUU gene − 106858 106929 72 Locate
ndhF gene − 108283 110517 2235 Locate
rpl32 gene + 110943 111113 171 Locate
trnL-UAG gene + 111817 111896 80 Locate
ccsA gene + 111941 112966 1026 Locate
ndhD gene − 113198 114739 1542 Locate
psaC gene − 114849 115094 246 Locate
ndhE gene − 115345 115647 303 Locate
ndhG gene − 115866 116396 531 Locate
ndhI gene − 116773 117279 507 Locate
ndhA gene − 117360 119436 2077 Locate
ndhH gene − 119438 120673 1236 Locate
rps15 gene − 120719 120991 273 Locate
ycf1 gene − 121417 127044 5628 Locate
trnN-GUU gene + 127263 127334 72 Locate
trnR-ACG gene − 127854 127927 74 Locate
rrn5 gene − 128171 128291 121 Locate
rrn4.5 gene − 128516 128618 103 Locate
rrn23 gene − 128719 131527 2809 Locate
trnA-UGC gene − 131693 132560 868 Locate
trnI-GAU gene − 132625 133636 1012 Locate
rrn16 gene − 133935 135425 1491 Locate
trnV-GAC gene − 135652 135723 72 Locate
rps12 gene + 137327 138110 784 Locate
rps7 gene + 138164 138631 468 Locate
ndhB gene + 138960 141113 2154 Locate
trnL-CAA gene + 141673 141753 81 Locate
ycf15 gene − 142014 142262 249 Locate
ycf2 gene − 142353 149204 6852 Locate
trnI-CAU gene + 149293 149366 74 Locate
rpl23 gene + 149532 149813 282 Locate
rpl2 gene + 149832 151314 1483 Locate
Status Available
Accession MW435409.1
Length 151,416 bp
GC content 38.0%
Annotated genes 132
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 14 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources