Salvia pratensis chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PP272175.1 · 11–84 bp · −
psbA · PP272175.1 · 388–1,446 bp · −
trnK-UUU · PP272175.1 · 1,678–4,258 bp · −
matK · PP272175.1 · 1,990–3,519 bp · −
rps16 · PP272175.1 · 4,833–5,932 bp · −
trnQ-UUG · PP272175.1 · 6,494–6,565 bp · −
trnS-GCU · PP272175.1 · 7,786–7,873 bp · −
atpA · PP272175.1 · 9,708–11,231 bp · −
atpF · PP272175.1 · 11,332–12,596 bp · −
atpH · PP272175.1 · 12,868–13,113 bp · −
atpI · PP272175.1 · 14,034–14,777 bp · −
rps2 · PP272175.1 · 15,002–15,712 bp · −
rpoC2 · PP272175.1 · 15,928–20,115 bp · −
rpoC1 · PP272175.1 · 20,280–23,105 bp · −
rpoB · PP272175.1 · 23,132–26,344 bp · −
psbM · PP272175.1 · 28,826–28,930 bp · −
trnD-GUC · PP272175.1 · 29,441–29,514 bp · −
trnY-GUA · PP272175.1 · 29,625–29,708 bp · −
trnE-UUC · PP272175.1 · 29,779–29,851 bp · −
trnS-UGA · PP272175.1 · 34,507–34,591 bp · −
trnfM-CAU · PP272175.1 · 35,646–35,719 bp · −
rps14 · PP272175.1 · 35,864–36,166 bp · −
psaB · PP272175.1 · 36,288–38,492 bp · −
psaA · PP272175.1 · 38,518–40,770 bp · −
ycf3 · PP272175.1 · 41,570–43,529 bp · −
rps4 · PP272175.1 · 44,718–45,323 bp · −
trnT-UGU · PP272175.1 · 45,674–45,746 bp · −
ndhJ · PP272175.1 · 48,034–48,510 bp · −
ndhK · PP272175.1 · 48,627–49,304 bp · −
ndhC · PP272175.1 · 49,356–49,718 bp · −
trnV-UAC · PP272175.1 · 50,693–51,341 bp · −
atpE · PP272175.1 · 51,805–52,206 bp · −
atpB · PP272175.1 · 52,203–53,699 bp · −
psbJ · PP272175.1 · 63,197–63,319 bp · −
psbL · PP272175.1 · 63,449–63,565 bp · −
psbF · PP272175.1 · 63,589–63,708 bp · −
psbE · PP272175.1 · 63,723–63,974 bp · −
trnW-CCA · PP272175.1 · 65,372–65,445 bp · −
trnP-UGG · PP272175.1 · 65,620–65,693 bp · −
rpl20 · PP272175.1 · 67,453–67,839 bp · −
rps12 · PP272175.1 · 68,634–68,747 bp · −
rps12 · PP272175.1 · 95,992–96,785 bp · −
clpP · PP272175.1 · 68,870–70,770 bp · −
psbN · PP272175.1 · 73,107–73,238 bp · −
rpoA · PP272175.1 · 76,626–77,633 bp · −
rps11 · PP272175.1 · 77,704–78,120 bp · −
rpl36 · PP272175.1 · 78,230–78,343 bp · −
infA · PP272175.1 · 78,439–78,672 bp · −
rps8 · PP272175.1 · 78,793–79,197 bp · −
rpl14 · PP272175.1 · 79,368–79,736 bp · −
rpl16 · PP272175.1 · 79,866–81,135 bp · −
rps3 · PP272175.1 · 81,286–81,948 bp · −
rpl22 · PP272175.1 · 81,933–82,400 bp · −
rps19 · PP272175.1 · 82,464–82,742 bp · −
rpl2 · PP272175.1 · 82,802–84,287 bp · −
rpl23 · PP272175.1 · 84,312–84,593 bp · −
trnI-CAU · PP272175.1 · 84,759–84,832 bp · −
trnL-CAA · PP272175.1 · 92,349–92,429 bp · −
ndhB · PP272175.1 · 92,989–95,142 bp · −
rps7 · PP272175.1 · 95,471–95,938 bp · −
trnN-GUU · PP272175.1 · 106,815–106,886 bp · −
ndhF · PP272175.1 · 108,234–110,465 bp · −
ndhD · PP272175.1 · 113,188–114,729 bp · −
psaC · PP272175.1 · 114,823–115,068 bp · −
ndhE · PP272175.1 · 115,319–115,621 bp · −
ndhG · PP272175.1 · 115,844–116,374 bp · −
ndhI · PP272175.1 · 116,748–117,254 bp · −
ndhA · PP272175.1 · 117,335–119,431 bp · −
ndhH · PP272175.1 · 119,433–120,668 bp · −
rps15 · PP272175.1 · 120,714–120,986 bp · −
ycf1 · PP272175.1 · 121,376–127,012 bp · −
trnR-ACG · PP272175.1 · 127,821–127,894 bp · −
rrn5 · PP272175.1 · 128,138–128,258 bp · −
rrn4.5 · PP272175.1 · 128,502–128,604 bp · −
rrn23 · PP272175.1 · 128,705–131,515 bp · −
trnA-UGC · PP272175.1 · 131,676–132,553 bp · −
trnI-GAU · PP272175.1 · 132,618–133,637 bp · −
rrn16 · PP272175.1 · 133,936–135,426 bp · −
trnV-GAC · PP272175.1 · 135,653–135,724 bp · −
ycf15 · PP272175.1 · 142,024–142,221 bp · −
ycf2 · PP272175.1 · 142,363–149,196 bp · −
psbK · PP272175.1 · 6,951–7,130 bp · +
psbI · PP272175.1 · 7,537–7,647 bp · +
trnG-UCC · PP272175.1 · 8,583–9,338 bp · +
trnR-UCU · PP272175.1 · 9,531–9,602 bp · +
trnC-GCA · PP272175.1 · 27,492–27,562 bp · +
petN · PP272175.1 · 27,726–27,815 bp · +
trnT-GGU · PP272175.1 · 30,407–30,478 bp · +
psbD · PP272175.1 · 31,829–32,890 bp · +
psbC · PP272175.1 · 32,838–34,259 bp · +
psbZ · PP272175.1 · 34,921–35,109 bp · +
trnG-GCC · PP272175.1 · 35,394–35,464 bp · +
trnS-GGA · PP272175.1 · 44,369–44,455 bp · +
trnL-UAA · PP272175.1 · 46,454–47,034 bp · +
trnF-GAA · PP272175.1 · 47,318–47,390 bp · +
trnM-CAU · PP272175.1 · 51,522–51,594 bp · +
rbcL · PP272175.1 · 54,478–55,944 bp · +
accD · PP272175.1 · 56,617–58,089 bp · +
psaI · PP272175.1 · 58,566–58,676 bp · +
ycf4 · PP272175.1 · 59,124–59,678 bp · +
cemA · PP272175.1 · 60,328–61,017 bp · +
petA · PP272175.1 · 61,226–62,188 bp · +
petL · PP272175.1 · 64,869–64,964 bp · +
petG · PP272175.1 · 65,143–65,256 bp · +
psaJ · PP272175.1 · 65,964–66,098 bp · +
rpl33 · PP272175.1 · 66,538–66,738 bp · +
rps18 · PP272175.1 · 66,909–67,214 bp · +
rps12 · PP272175.1 · 137,332–138,125 bp · +
psbB · PP272175.1 · 71,230–72,756 bp · +
psbT · PP272175.1 · 72,939–73,046 bp · +
psbH · PP272175.1 · 73,344–73,565 bp · +
petB · PP272175.1 · 73,692–75,071 bp · +
petD · PP272175.1 · 75,259–76,449 bp · +
ycf2 · PP272175.1 · 84,921–91,754 bp · +
ycf15 · PP272175.1 · 91,944–92,093 bp · +
trnV-GAC · PP272175.1 · 98,393–98,464 bp · +
rrn16 · PP272175.1 · 98,691–100,181 bp · +
trnI-GAU · PP272175.1 · 100,480–101,499 bp · +
trnA-UGC · PP272175.1 · 101,564–102,441 bp · +
rrn23 · PP272175.1 · 102,602–105,412 bp · +
rrn4.5 · PP272175.1 · 105,513–105,615 bp · +
rrn5 · PP272175.1 · 105,859–105,979 bp · +
trnR-ACG · PP272175.1 · 106,223–106,296 bp · +
ycf1 · PP272175.1 · 107,105–108,367 bp · +
rpl32 · PP272175.1 · 110,896–111,129 bp · +
trnL-UAG · PP272175.1 · 111,812–111,891 bp · +
ccsA · PP272175.1 · 111,989–112,960 bp · +
trnN-GUU · PP272175.1 · 127,231–127,302 bp · +
rps7 · PP272175.1 · 138,179–138,646 bp · +
ndhB · PP272175.1 · 138,975–141,128 bp · +
trnL-CAA · PP272175.1 · 141,688–141,768 bp · +
trnI-CAU · PP272175.1 · 149,285–149,358 bp · +
rpl23 · PP272175.1 · 149,524–149,805 bp · +
rpl2 · PP272175.1 · 149,830–151,315 bp · +
rps19 · PP272175.1 · 151,375–151,416 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Salvia pratensis
ANNOTATED PLASTOME
PP272175.1
151,417 bp · 134 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37854 75708 113563 151417 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2 rps19
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
135 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 11 84 74 Locate
psbA gene − 388 1446 1059 Locate
trnK-UUU gene − 1678 4258 2581 Locate
matK gene − 1990 3519 1530 Locate
rps16 gene − 4833 5932 1100 Locate
trnQ-UUG gene − 6494 6565 72 Locate
psbK gene + 6951 7130 180 Locate
psbI gene + 7537 7647 111 Locate
trnS-GCU gene − 7786 7873 88 Locate
trnG-UCC gene + 8583 9338 756 Locate
trnR-UCU gene + 9531 9602 72 Locate
atpA gene − 9708 11231 1524 Locate
atpF gene − 11332 12596 1265 Locate
atpH gene − 12868 13113 246 Locate
atpI gene − 14034 14777 744 Locate
rps2 gene − 15002 15712 711 Locate
rpoC2 gene − 15928 20115 4188 Locate
rpoC1 gene − 20280 23105 2826 Locate
rpoB gene − 23132 26344 3213 Locate
trnC-GCA gene + 27492 27562 71 Locate
petN gene + 27726 27815 90 Locate
psbM gene − 28826 28930 105 Locate
trnD-GUC gene − 29441 29514 74 Locate
trnY-GUA gene − 29625 29708 84 Locate
trnE-UUC gene − 29779 29851 73 Locate
trnT-GGU gene + 30407 30478 72 Locate
psbD gene + 31829 32890 1062 Locate
psbC gene + 32838 34259 1422 Locate
trnS-UGA gene − 34507 34591 85 Locate
psbZ gene + 34921 35109 189 Locate
trnG-GCC gene + 35394 35464 71 Locate
trnfM-CAU gene − 35646 35719 74 Locate
rps14 gene − 35864 36166 303 Locate
psaB gene − 36288 38492 2205 Locate
psaA gene − 38518 40770 2253 Locate
ycf3 gene − 41570 43529 1960 Locate
trnS-GGA gene + 44369 44455 87 Locate
rps4 gene − 44718 45323 606 Locate
trnT-UGU gene − 45674 45746 73 Locate
trnL-UAA gene + 46454 47034 581 Locate
trnF-GAA gene + 47318 47390 73 Locate
ndhJ gene − 48034 48510 477 Locate
ndhK gene − 48627 49304 678 Locate
ndhC gene − 49356 49718 363 Locate
trnV-UAC gene − 50693 51341 649 Locate
trnM-CAU gene + 51522 51594 73 Locate
atpE gene − 51805 52206 402 Locate
atpB gene − 52203 53699 1497 Locate
rbcL gene + 54478 55944 1467 Locate
accD gene + 56617 58089 1473 Locate
psaI gene + 58566 58676 111 Locate
ycf4 gene + 59124 59678 555 Locate
cemA gene + 60328 61017 690 Locate
petA gene + 61226 62188 963 Locate
psbJ gene − 63197 63319 123 Locate
psbL gene − 63449 63565 117 Locate
psbF gene − 63589 63708 120 Locate
psbE gene − 63723 63974 252 Locate
petL gene + 64869 64964 96 Locate
petG gene + 65143 65256 114 Locate
trnW-CCA gene − 65372 65445 74 Locate
trnP-UGG gene − 65620 65693 74 Locate
psaJ gene + 65964 66098 135 Locate
rpl33 gene + 66538 66738 201 Locate
rps18 gene + 66909 67214 306 Locate
rpl20 gene − 67453 67839 387 Locate
rps12 gene − 68634 68747 114 Locate
clpP gene − 68870 70770 1901 Locate
psbB gene + 71230 72756 1527 Locate
psbT gene + 72939 73046 108 Locate
psbN gene − 73107 73238 132 Locate
psbH gene + 73344 73565 222 Locate
petB gene + 73692 75071 1380 Locate
petD gene + 75259 76449 1191 Locate
rpoA gene − 76626 77633 1008 Locate
rps11 gene − 77704 78120 417 Locate
rpl36 gene − 78230 78343 114 Locate
infA gene − 78439 78672 234 Locate
rps8 gene − 78793 79197 405 Locate
rpl14 gene − 79368 79736 369 Locate
rpl16 gene − 79866 81135 1270 Locate
rps3 gene − 81286 81948 663 Locate
rpl22 gene − 81933 82400 468 Locate
rps19 gene − 82464 82742 279 Locate
rpl2 gene − 82802 84287 1486 Locate
rpl23 gene − 84312 84593 282 Locate
trnI-CAU gene − 84759 84832 74 Locate
ycf2 gene + 84921 91754 6834 Locate
ycf15 gene + 91944 92093 150 Locate
trnL-CAA gene − 92349 92429 81 Locate
ndhB gene − 92989 95142 2154 Locate
rps7 gene − 95471 95938 468 Locate
rps12 gene − 95992 96785 794 Locate
trnV-GAC gene + 98393 98464 72 Locate
rrn16 gene + 98691 100181 1491 Locate
trnI-GAU gene + 100480 101499 1020 Locate
trnA-UGC gene + 101564 102441 878 Locate
rrn23 gene + 102602 105412 2811 Locate
rrn4.5 gene + 105513 105615 103 Locate
rrn5 gene + 105859 105979 121 Locate
trnR-ACG gene + 106223 106296 74 Locate
trnN-GUU gene − 106815 106886 72 Locate
ycf1 gene + 107105 108367 1263 Locate
ndhF gene − 108234 110465 2232 Locate
rpl32 gene + 110896 111129 234 Locate
trnL-UAG gene + 111812 111891 80 Locate
ccsA gene + 111989 112960 972 Locate
ndhD gene − 113188 114729 1542 Locate
psaC gene − 114823 115068 246 Locate
ndhE gene − 115319 115621 303 Locate
ndhG gene − 115844 116374 531 Locate
ndhI gene − 116748 117254 507 Locate
ndhA gene − 117335 119431 2097 Locate
ndhH gene − 119433 120668 1236 Locate
rps15 gene − 120714 120986 273 Locate
ycf1 gene − 121376 127012 5637 Locate
trnN-GUU gene + 127231 127302 72 Locate
trnR-ACG gene − 127821 127894 74 Locate
rrn5 gene − 128138 128258 121 Locate
rrn4.5 gene − 128502 128604 103 Locate
rrn23 gene − 128705 131515 2811 Locate
trnA-UGC gene − 131676 132553 878 Locate
trnI-GAU gene − 132618 133637 1020 Locate
rrn16 gene − 133936 135426 1491 Locate
trnV-GAC gene − 135653 135724 72 Locate
rps12 gene + 137332 138125 794 Locate
rps7 gene + 138179 138646 468 Locate
ndhB gene + 138975 141128 2154 Locate
trnL-CAA gene + 141688 141768 81 Locate
ycf15 gene − 142024 142221 198 Locate
ycf2 gene − 142363 149196 6834 Locate
trnI-CAU gene + 149285 149358 74 Locate
rpl23 gene + 149524 149805 282 Locate
rpl2 gene + 149830 151315 1486 Locate
rps19 gene + 151375 151416 42 Locate
Status Available
Accession PP272175.1
Length 151,417 bp
GC content 37.9%
Annotated genes 134
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 27 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources