Salvia rosmarinus chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
LSC
IR
SSC
IR
trnH (GUG) · NC_027259.1 · 11–85 bp · −
psbA · NC_027259.1 · 419–1,477 bp · −
trnK (UUU) · NC_027259.1 · 1,709–4,255 bp · −
matK · NC_027259.1 · 1,996–3,519 bp · −
rps16 · NC_027259.1 · 4,795–5,926 bp · −
trnQ (UUG) · NC_027259.1 · 7,000–7,071 bp · −
trnS (GCU) · NC_027259.1 · 8,385–8,472 bp · −
atpA · NC_027259.1 · 10,289–11,812 bp · −
atpF · NC_027259.1 · 11,908–13,160 bp · −
atpH · NC_027259.1 · 13,435–13,680 bp · −
atpI · NC_027259.1 · 14,689–15,432 bp · −
rps2 · NC_027259.1 · 15,657–16,367 bp · −
rpoC2 · NC_027259.1 · 16,582–20,769 bp · −
rpoC1 · NC_027259.1 · 20,927–23,771 bp · −
rpoB · NC_027259.1 · 23,777–26,989 bp · −
psbM · NC_027259.1 · 29,804–29,908 bp · −
trnD (GUC) · NC_027259.1 · 30,427–30,500 bp · −
trnY (GUA) · NC_027259.1 · 30,611–30,694 bp · −
trnE (UUC) · NC_027259.1 · 30,766–30,835 bp · −
trnT (GGU) · NC_027259.1 · 31,420–31,491 bp · −
trnS (UGA) · NC_027259.1 · 35,517–35,609 bp · −
tRNA-fM (CAU) · NC_027259.1 · 36,649–36,722 bp · −
rps14 · NC_027259.1 · 36,867–37,169 bp · −
psaB · NC_027259.1 · 37,293–39,497 bp · −
psaA · NC_027259.1 · 39,523–41,775 bp · −
ycf3 · NC_027259.1 · 42,577–44,526 bp · −
rps4 · NC_027259.1 · 45,736–46,341 bp · −
trnT (UGU) · NC_027259.1 · 46,685–46,757 bp · −
ndhJ · NC_027259.1 · 48,991–49,467 bp · −
ndhK · NC_027259.1 · 49,578–50,255 bp · −
ndhC · NC_027259.1 · 50,307–50,669 bp · −
trnV (UAC) · NC_027259.1 · 51,626–52,274 bp · −
atpE · NC_027259.1 · 52,737–53,138 bp · −
atpB · NC_027259.1 · 53,135–54,631 bp · −
psbJ · NC_027259.1 · 63,812–63,934 bp · −
psbL · NC_027259.1 · 64,064–64,180 bp · −
psbF · NC_027259.1 · 64,204–64,323 bp · −
psbE · NC_027259.1 · 64,338–64,589 bp · −
trnW (CCA) · NC_027259.1 · 65,981–66,054 bp · −
trnP (UGG) · NC_027259.1 · 66,229–66,302 bp · −
rpl20 · NC_027259.1 · 68,091–68,477 bp · −
rps12 · NC_027259.1 · 69,261–69,389 bp · −
rps12 · NC_027259.1 · 96,642–97,435 bp · −
clpP · NC_027259.1 · 69,513–71,426 bp · −
psbN · NC_027259.1 · 73,744–73,875 bp · −
rpoA · NC_027259.1 · 77,253–78,260 bp · −
rps11 · NC_027259.1 · 78,331–78,747 bp · −
rpl36 · NC_027259.1 · 78,852–78,965 bp · −
infA · NC_027259.1 · 79,061–79,294 bp · −
rps8 · NC_027259.1 · 79,414–79,818 bp · −
rpl14 · NC_027259.1 · 79,991–80,359 bp · −
rpl16 · NC_027259.1 · 80,490–81,770 bp · −
rps3 · NC_027259.1 · 81,936–82,598 bp · −
rpl22 · NC_027259.1 · 82,583–83,050 bp · −
rps19 · NC_027259.1 · 83,120–83,398 bp · −
rpl2 · NC_027259.1 · 83,459–84,946 bp · −
rpl23 · NC_027259.1 · 84,965–85,246 bp · −
trnH (CAU) · NC_027259.1 · 85,412–85,485 bp · −
trnL (CAA) · NC_027259.1 · 93,007–93,087 bp · −
ndhB · NC_027259.1 · 93,639–95,846 bp · −
rps7 · NC_027259.1 · 96,121–96,588 bp · −
trnN (GUU) · NC_027259.1 · 107,566–107,637 bp · −
ndhF · NC_027259.1 · 109,140–111,371 bp · −
ndhD · NC_027259.1 · 114,123–115,637 bp · −
psaC · NC_027259.1 · 115,758–116,003 bp · −
ndhE · NC_027259.1 · 116,254–116,559 bp · −
ndhG · NC_027259.1 · 116,770–117,300 bp · −
ndhI · NC_027259.1 · 117,684–118,190 bp · −
ndhA · NC_027259.1 · 118,271–120,371 bp · −
ndhH · NC_027259.1 · 120,373–121,554 bp · −
rps15 · NC_027259.1 · 121,654–121,926 bp · −
ycf1 · NC_027259.1 · 122,353–127,851 bp · −
trnR (ACG) · NC_027259.1 · 128,778–128,850 bp · −
rrn5 · NC_027259.1 · 129,094–129,214 bp · −
rrn4.5 · NC_027259.1 · 129,474–129,576 bp · −
rrn23 · NC_027259.1 · 129,676–132,486 bp · −
trnA (UGC) · NC_027259.1 · 132,681–133,558 bp · −
trnI (GAU) · NC_027259.1 · 133,624–134,642 bp · −
rrn16 · NC_027259.1 · 134,941–136,433 bp · −
trnV (GAC) · NC_027259.1 · 136,660–136,731 bp · −
trnL (CAA) · NC_027259.1 · 142,731–142,811 bp · −
ycf15 · NC_027259.1 · 143,072–143,320 bp · −
ycf2 · NC_027259.1 · 143,411–150,244 bp · −
psbK · NC_027259.1 · 7,457–7,642 bp · +
psbI · NC_027259.1 · 8,030–8,140 bp · +
trnG (UCC) · NC_027259.1 · 9,175–9,930 bp · +
trnR (UCU) · NC_027259.1 · 10,108–10,182 bp · +
trnC (GCA) · NC_027259.1 · 28,114–28,189 bp · +
petN · NC_027259.1 · 28,566–28,655 bp · +
psbD · NC_027259.1 · 32,842–33,903 bp · +
psbC · NC_027259.1 · 33,851–35,272 bp · +
psbZ · NC_027259.1 · 35,944–36,132 bp · +
trnG (GCC) · NC_027259.1 · 36,411–36,481 bp · +
trnS (GGA) · NC_027259.1 · 45,367–45,453 bp · +
trnL (UAA) · NC_027259.1 · 47,419–47,995 bp · +
trnF (GAA) · NC_027259.1 · 48,276–48,348 bp · +
trnM (CAU) · NC_027259.1 · 52,454–52,526 bp · +
rbcL · NC_027259.1 · 55,373–56,806 bp · +
accD · NC_027259.1 · 57,438–58,980 bp · +
psaI · NC_027259.1 · 59,428–59,538 bp · +
ycf4 · NC_027259.1 · 59,983–60,537 bp · +
cemA · NC_027259.1 · 60,932–61,621 bp · +
petA · NC_027259.1 · 61,835–62,797 bp · +
petL · NC_027259.1 · 65,484–65,579 bp · +
petG · NC_027259.1 · 65,758–65,871 bp · +
psaJ · NC_027259.1 · 66,587–66,721 bp · +
rpl33 · NC_027259.1 · 67,169–67,369 bp · +
rps18 · NC_027259.1 · 67,552–67,857 bp · +
rps12 · NC_027259.1 · 138,383–139,176 bp · +
psbB · NC_027259.1 · 71,875–73,401 bp · +
psbT · NC_027259.1 · 73,576–73,683 bp · +
psbH · NC_027259.1 · 73,981–74,202 bp · +
petB · NC_027259.1 · 74,329–75,697 bp · +
petD · NC_027259.1 · 75,885–77,076 bp · +
ycf2 · NC_027259.1 · 85,574–92,407 bp · +
ycf15 · NC_027259.1 · 92,498–92,746 bp · +
trnV (GAC) · NC_027259.1 · 99,087–99,158 bp · +
rrn16 · NC_027259.1 · 99,385–100,877 bp · +
trnI (GAU) · NC_027259.1 · 101,176–102,194 bp · +
trnA (UGC) · NC_027259.1 · 102,260–103,137 bp · +
rrn23 · NC_027259.1 · 103,332–106,142 bp · +
rrn4.5 · NC_027259.1 · 106,242–106,344 bp · +
rrn5 · NC_027259.1 · 106,604–106,724 bp · +
trnR (ACG) · NC_027259.1 · 106,968–107,041 bp · +
ycf1 · NC_027259.1 · 107,967–108,998 bp · +
rpl32 · NC_027259.1 · 111,825–111,995 bp · +
trnL (UAG) · NC_027259.1 · 112,747–112,826 bp · +
ccsA · NC_027259.1 · 112,918–113,889 bp · +
trnN (GUU) · NC_027259.1 · 128,181–128,252 bp · +
rps7 · NC_027259.1 · 139,230–139,697 bp · +
ndhB · NC_027259.1 · 139,972–142,179 bp · +
trnH (CAU) · NC_027259.1 · 150,333–150,406 bp · +
rpl23 · NC_027259.1 · 150,572–150,853 bp · +
rpl2 · NC_027259.1 · 150,872–152,359 bp · +
rps19 · NC_027259.1 · 152,420–152,449 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Salvia rosmarinus
ANNOTATED PLASTOME
NC_027259.1
152,462 bp · 134 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38116 76231 114346 152462 bp
Forward strand 5′ → 3′
psbK psbI trnG (UCC) trnR (UCU) trnC (GCA) petN psbD psbC psbZ trnG (GCC) trnS (GGA) trnL (UAA) trnF (GAA) trnM (CAU) rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV (GAC) rrn16 trnI (GAU) trnA (UGC) rrn23 rrn4.5 rrn5 trnR (ACG) ycf1 rpl32 trnL (UAG) ccsA trnN (GUU) rps12 rps7 ndhB trnH (CAU) rpl23 rpl2 rps19
trnH (GUG) psbA trnK (UUU) matK rps16 trnQ (UUG) trnS (GCU) atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD (GUC) trnY (GUA) trnE (UUC) trnT (GGU) trnS (UGA) tRNA-fM (CAU) rps14 psaB psaA ycf3 rps4 trnT (UGU) ndhJ ndhK ndhC trnV (UAC) atpE atpB psbJ psbL psbF psbE trnW (CCA) trnP (UGG) rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnH (CAU) trnL (CAA) ndhB rps7 rps12 trnN (GUU) ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR (ACG) rrn5 rrn4.5 rrn23 trnA (UGC) trnI (GAU) rrn16 trnV (GAC) trnL (CAA) ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
135 local segments
Gene Type Group Strand Start End Length
trnH (GUG) gene − 11 85 75 Locate
psbA gene − 419 1477 1059 Locate
trnK (UUU) gene − 1709 4255 2547 Locate
matK gene − 1996 3519 1524 Locate
rps16 gene − 4795 5926 1132 Locate
trnQ (UUG) gene − 7000 7071 72 Locate
psbK gene + 7457 7642 186 Locate
psbI gene + 8030 8140 111 Locate
trnS (GCU) gene − 8385 8472 88 Locate
trnG (UCC) gene + 9175 9930 756 Locate
trnR (UCU) gene + 10108 10182 75 Locate
atpA gene − 10289 11812 1524 Locate
atpF gene − 11908 13160 1253 Locate
atpH gene − 13435 13680 246 Locate
atpI gene − 14689 15432 744 Locate
rps2 gene − 15657 16367 711 Locate
rpoC2 gene − 16582 20769 4188 Locate
rpoC1 gene − 20927 23771 2845 Locate
rpoB gene − 23777 26989 3213 Locate
trnC (GCA) gene + 28114 28189 76 Locate
petN gene + 28566 28655 90 Locate
psbM gene − 29804 29908 105 Locate
trnD (GUC) gene − 30427 30500 74 Locate
trnY (GUA) gene − 30611 30694 84 Locate
trnE (UUC) gene − 30766 30835 70 Locate
trnT (GGU) gene − 31420 31491 72 Locate
psbD gene + 32842 33903 1062 Locate
psbC gene + 33851 35272 1422 Locate
trnS (UGA) gene − 35517 35609 93 Locate
psbZ gene + 35944 36132 189 Locate
trnG (GCC) gene + 36411 36481 71 Locate
tRNA-fM (CAU) gene − 36649 36722 74 Locate
rps14 gene − 36867 37169 303 Locate
psaB gene − 37293 39497 2205 Locate
psaA gene − 39523 41775 2253 Locate
ycf3 gene − 42577 44526 1950 Locate
trnS (GGA) gene + 45367 45453 87 Locate
rps4 gene − 45736 46341 606 Locate
trnT (UGU) gene − 46685 46757 73 Locate
trnL (UAA) gene + 47419 47995 577 Locate
trnF (GAA) gene + 48276 48348 73 Locate
ndhJ gene − 48991 49467 477 Locate
ndhK gene − 49578 50255 678 Locate
ndhC gene − 50307 50669 363 Locate
trnV (UAC) gene − 51626 52274 649 Locate
trnM (CAU) gene + 52454 52526 73 Locate
atpE gene − 52737 53138 402 Locate
atpB gene − 53135 54631 1497 Locate
rbcL gene + 55373 56806 1434 Locate
accD gene + 57438 58980 1543 Locate
psaI gene + 59428 59538 111 Locate
ycf4 gene + 59983 60537 555 Locate
cemA gene + 60932 61621 690 Locate
petA gene + 61835 62797 963 Locate
psbJ gene − 63812 63934 123 Locate
psbL gene − 64064 64180 117 Locate
psbF gene − 64204 64323 120 Locate
psbE gene − 64338 64589 252 Locate
petL gene + 65484 65579 96 Locate
petG gene + 65758 65871 114 Locate
trnW (CCA) gene − 65981 66054 74 Locate
trnP (UGG) gene − 66229 66302 74 Locate
psaJ gene + 66587 66721 135 Locate
rpl33 gene + 67169 67369 201 Locate
rps18 gene + 67552 67857 306 Locate
rpl20 gene − 68091 68477 387 Locate
rps12 gene − 69261 69389 129 Locate
clpP gene − 69513 71426 1914 Locate
psbB gene + 71875 73401 1527 Locate
psbT gene + 73576 73683 108 Locate
psbN gene − 73744 73875 132 Locate
psbH gene + 73981 74202 222 Locate
petB gene + 74329 75697 1369 Locate
petD gene + 75885 77076 1192 Locate
rpoA gene − 77253 78260 1008 Locate
rps11 gene − 78331 78747 417 Locate
rpl36 gene − 78852 78965 114 Locate
infA gene − 79061 79294 234 Locate
rps8 gene − 79414 79818 405 Locate
rpl14 gene − 79991 80359 369 Locate
rpl16 gene − 80490 81770 1281 Locate
rps3 gene − 81936 82598 663 Locate
rpl22 gene − 82583 83050 468 Locate
rps19 gene − 83120 83398 279 Locate
rpl2 gene − 83459 84946 1488 Locate
rpl23 gene − 84965 85246 282 Locate
trnH (CAU) gene − 85412 85485 74 Locate
ycf2 gene + 85574 92407 6834 Locate
ycf15 gene + 92498 92746 249 Locate
trnL (CAA) gene − 93007 93087 81 Locate
ndhB gene − 93639 95846 2208 Locate
rps7 gene − 96121 96588 468 Locate
rps12 gene − 96642 97435 794 Locate
trnV (GAC) gene + 99087 99158 72 Locate
rrn16 gene + 99385 100877 1493 Locate
trnI (GAU) gene + 101176 102194 1019 Locate
trnA (UGC) gene + 102260 103137 878 Locate
rrn23 gene + 103332 106142 2811 Locate
rrn4.5 gene + 106242 106344 103 Locate
rrn5 gene + 106604 106724 121 Locate
trnR (ACG) gene + 106968 107041 74 Locate
trnN (GUU) gene − 107566 107637 72 Locate
ycf1 gene + 107967 108998 1032 Locate
ndhF gene − 109140 111371 2232 Locate
rpl32 gene + 111825 111995 171 Locate
trnL (UAG) gene + 112747 112826 80 Locate
ccsA gene + 112918 113889 972 Locate
ndhD gene − 114123 115637 1515 Locate
psaC gene − 115758 116003 246 Locate
ndhE gene − 116254 116559 306 Locate
ndhG gene − 116770 117300 531 Locate
ndhI gene − 117684 118190 507 Locate
ndhA gene − 118271 120371 2101 Locate
ndhH gene − 120373 121554 1182 Locate
rps15 gene − 121654 121926 273 Locate
ycf1 gene − 122353 127851 5499 Locate
trnN (GUU) gene + 128181 128252 72 Locate
trnR (ACG) gene − 128778 128850 73 Locate
rrn5 gene − 129094 129214 121 Locate
rrn4.5 gene − 129474 129576 103 Locate
rrn23 gene − 129676 132486 2811 Locate
trnA (UGC) gene − 132681 133558 878 Locate
trnI (GAU) gene − 133624 134642 1019 Locate
rrn16 gene − 134941 136433 1493 Locate
trnV (GAC) gene − 136660 136731 72 Locate
rps12 gene + 138383 139176 794 Locate
rps7 gene + 139230 139697 468 Locate
ndhB gene + 139972 142179 2208 Locate
trnL (CAA) gene − 142731 142811 81 Locate
ycf15 gene − 143072 143320 249 Locate
ycf2 gene − 143411 150244 6834 Locate
trnH (CAU) gene + 150333 150406 74 Locate
rpl23 gene + 150572 150853 282 Locate
rpl2 gene + 150872 152359 1488 Locate
rps19 gene + 152420 152449 30 Locate
Status Available
Accession NC_027259.1
Length 152,462 bp
GC content 38.0%
Annotated genes 134
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 27 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 1
Inverted 1
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources