Salvia sclarea chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
LSC
IR
SSC
IR
trnH-GUG · NC_050900.1 · 11–84 bp · −
psbA · NC_050900.1 · 388–1,446 bp · −
trnK-UUU · NC_050900.1 · 1,678–4,267 bp · −
matK · NC_050900.1 · 1,998–3,527 bp · −
rps16 · NC_050900.1 · 4,834–5,930 bp · −
trnQ-UUG · NC_050900.1 · 6,474–6,545 bp · −
trnS-GCU · NC_050900.1 · 7,766–7,853 bp · −
atpA · NC_050900.1 · 9,676–11,199 bp · −
atpF · NC_050900.1 · 11,295–12,566 bp · −
atpH · NC_050900.1 · 12,838–13,083 bp · −
atpI · NC_050900.1 · 13,994–14,737 bp · −
rps2 · NC_050900.1 · 14,962–15,672 bp · −
rpoC2 · NC_050900.1 · 15,889–20,076 bp · −
rpoC1 · NC_050900.1 · 20,241–23,046 bp · −
rpoB · NC_050900.1 · 23,073–26,285 bp · −
psbM · NC_050900.1 · 28,730–28,834 bp · −
trnD-GUC · NC_050900.1 · 29,345–29,418 bp · −
trnY-GUA · NC_050900.1 · 29,529–29,612 bp · −
trnE-UUC · NC_050900.1 · 29,683–29,755 bp · −
trnS-UGA · NC_050900.1 · 34,418–34,510 bp · −
trnfM-CAU · NC_050900.1 · 35,546–35,619 bp · −
rps14 · NC_050900.1 · 35,764–36,066 bp · −
psaB · NC_050900.1 · 36,188–38,392 bp · −
psaA · NC_050900.1 · 38,418–40,670 bp · −
ycf3 · NC_050900.1 · 41,458–43,415 bp · −
rps4 · NC_050900.1 · 44,620–45,225 bp · −
trnT-UGU · NC_050900.1 · 45,576–45,648 bp · −
ndhJ · NC_050900.1 · 47,908–48,402 bp · −
ndhK · NC_050900.1 · 48,495–49,172 bp · −
ndhC · NC_050900.1 · 49,224–49,586 bp · −
trnV-UAC · NC_050900.1 · 50,552–51,200 bp · −
atpE · NC_050900.1 · 51,659–52,060 bp · −
atpB · NC_050900.1 · 52,057–53,553 bp · −
psbJ · NC_050900.1 · 63,039–63,161 bp · −
psbL · NC_050900.1 · 63,291–63,407 bp · −
psbF · NC_050900.1 · 63,431–63,550 bp · −
psbE · NC_050900.1 · 63,565–63,816 bp · −
trnW-CCA · NC_050900.1 · 65,219–65,292 bp · −
trnP-UGG · NC_050900.1 · 65,467–65,540 bp · −
rpl20 · NC_050900.1 · 67,306–67,692 bp · −
rps12 · NC_050900.1 · 68,488–68,601 bp · −
rps12 · NC_050900.1 · 95,821–96,614 bp · −
clpP · NC_050900.1 · 68,724–70,626 bp · −
psbN · NC_050900.1 · 72,958–73,089 bp · −
rpoA · NC_050900.1 · 76,469–77,476 bp · −
rps11 · NC_050900.1 · 77,547–77,963 bp · −
rpl36 · NC_050900.1 · 78,073–78,186 bp · −
infA · NC_050900.1 · 78,282–78,515 bp · −
rps8 · NC_050900.1 · 78,636–79,040 bp · −
rpl14 · NC_050900.1 · 79,212–79,580 bp · −
rpl16 · NC_050900.1 · 79,710–80,979 bp · −
rps3 · NC_050900.1 · 81,122–81,784 bp · −
rpl22 · NC_050900.1 · 81,769–82,236 bp · −
rps19 · NC_050900.1 · 82,300–82,578 bp · −
rpl2 · NC_050900.1 · 82,638–84,125 bp · −
rpl23 · NC_050900.1 · 84,144–84,425 bp · −
trnI-CAU · NC_050900.1 · 84,591–84,664 bp · −
trnL-CAA · NC_050900.1 · 92,181–92,261 bp · −
ndhB · NC_050900.1 · 92,818–95,025 bp · −
rps7 · NC_050900.1 · 95,300–95,767 bp · −
trnN-GUU · NC_050900.1 · 106,650–106,721 bp · −
ndhF · NC_050900.1 · 108,069–110,336 bp · −
ndhD · NC_050900.1 · 113,031–114,572 bp · −
psaC · NC_050900.1 · 114,666–114,911 bp · −
ndhE · NC_050900.1 · 115,162–115,464 bp · −
ndhG · NC_050900.1 · 115,697–116,227 bp · −
ndhI · NC_050900.1 · 116,601–117,107 bp · −
ndhA · NC_050900.1 · 117,188–119,289 bp · −
ndhH · NC_050900.1 · 119,291–120,526 bp · −
rps15 · NC_050900.1 · 120,572–120,844 bp · −
ycf1 · NC_050900.1 · 121,234–126,864 bp · −
trnR-ACG · NC_050900.1 · 127,673–127,746 bp · −
rrn5 · NC_050900.1 · 127,990–128,110 bp · −
rrn4.5 · NC_050900.1 · 128,360–128,462 bp · −
rrn23 · NC_050900.1 · 128,563–131,373 bp · −
trnA-UGC · NC_050900.1 · 131,534–132,411 bp · −
trnI-GAU · NC_050900.1 · 132,476–133,495 bp · −
rrn16 · NC_050900.1 · 133,794–135,284 bp · −
trnV-GAC · NC_050900.1 · 135,511–135,582 bp · −
ycf15 · NC_050900.1 · 141,879–142,142 bp · −
ycf2 · NC_050900.1 · 142,218–149,051 bp · −
psbK · NC_050900.1 · 6,922–7,110 bp · +
psbI · NC_050900.1 · 7,517–7,627 bp · +
trnG-UCC · NC_050900.1 · 8,564–9,318 bp · +
trnR-UCU · NC_050900.1 · 9,499–9,570 bp · +
trnC-GCA · NC_050900.1 · 27,425–27,495 bp · +
petN · NC_050900.1 · 27,659–27,748 bp · +
trnT-GGU · NC_050900.1 · 30,323–30,394 bp · +
psbD · NC_050900.1 · 31,742–32,803 bp · +
psbC · NC_050900.1 · 32,751–34,172 bp · +
psbZ · NC_050900.1 · 34,765–35,028 bp · +
trnG-GCC · NC_050900.1 · 35,304–35,374 bp · +
trnS-GGA · NC_050900.1 · 44,266–44,352 bp · +
trnL-UAA · NC_050900.1 · 46,341–46,904 bp · +
trnF-GAA · NC_050900.1 · 47,188–47,260 bp · +
trnM-CAU · NC_050900.1 · 51,381–51,453 bp · +
rbcL · NC_050900.1 · 54,331–55,785 bp · +
accD · NC_050900.1 · 56,485–57,957 bp · +
psaI · NC_050900.1 · 58,426–58,536 bp · +
ycf4 · NC_050900.1 · 58,983–59,537 bp · +
cemA · NC_050900.1 · 60,181–60,870 bp · +
petA · NC_050900.1 · 61,079–62,041 bp · +
petL · NC_050900.1 · 64,715–64,810 bp · +
petG · NC_050900.1 · 64,990–65,103 bp · +
psaJ · NC_050900.1 · 65,760–65,945 bp · +
rpl33 · NC_050900.1 · 66,392–66,592 bp · +
rps18 · NC_050900.1 · 66,763–67,068 bp · +
rps12 · NC_050900.1 · 137,190–137,983 bp · +
psbB · NC_050900.1 · 71,080–72,606 bp · +
psbT · NC_050900.1 · 72,790–72,897 bp · +
psbH · NC_050900.1 · 73,177–73,416 bp · +
petB · NC_050900.1 · 73,542–74,914 bp · +
petD · NC_050900.1 · 75,102–76,292 bp · +
ycf2 · NC_050900.1 · 84,753–91,586 bp · +
ycf15 · NC_050900.1 · 91,662–91,925 bp · +
trnV-GAC · NC_050900.1 · 98,222–98,293 bp · +
rrn16 · NC_050900.1 · 98,520–100,010 bp · +
trnI-GAU · NC_050900.1 · 100,309–101,328 bp · +
trnA-UGC · NC_050900.1 · 101,393–102,270 bp · +
rrn23 · NC_050900.1 · 102,431–105,241 bp · +
rrn4.5 · NC_050900.1 · 105,342–105,444 bp · +
rrn5 · NC_050900.1 · 105,694–105,814 bp · +
trnR-ACG · NC_050900.1 · 106,058–106,131 bp · +
rpl32 · NC_050900.1 · 110,731–110,928 bp · +
trnL-UAG · NC_050900.1 · 111,654–111,733 bp · +
ccsA · NC_050900.1 · 111,831–112,802 bp · +
trnN-GUU · NC_050900.1 · 127,083–127,154 bp · +
rps7 · NC_050900.1 · 138,037–138,504 bp · +
ndhB · NC_050900.1 · 138,779–140,986 bp · +
trnL-CAA · NC_050900.1 · 141,543–141,623 bp · +
trnI-CAU · NC_050900.1 · 149,140–149,213 bp · +
rpl23 · NC_050900.1 · 149,379–149,660 bp · +
rpl2 · NC_050900.1 · 149,679–151,166 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Salvia sclarea
ANNOTATED PLASTOME
NC_050900.1
151,268 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37817 75634 113451 151268 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 11 84 74 Locate
psbA gene − 388 1446 1059 Locate
trnK-UUU gene − 1678 4267 2590 Locate
matK gene − 1998 3527 1530 Locate
rps16 gene − 4834 5930 1097 Locate
trnQ-UUG gene − 6474 6545 72 Locate
psbK gene + 6922 7110 189 Locate
psbI gene + 7517 7627 111 Locate
trnS-GCU gene − 7766 7853 88 Locate
trnG-UCC gene + 8564 9318 755 Locate
trnR-UCU gene + 9499 9570 72 Locate
atpA gene − 9676 11199 1524 Locate
atpF gene − 11295 12566 1272 Locate
atpH gene − 12838 13083 246 Locate
atpI gene − 13994 14737 744 Locate
rps2 gene − 14962 15672 711 Locate
rpoC2 gene − 15889 20076 4188 Locate
rpoC1 gene − 20241 23046 2806 Locate
rpoB gene − 23073 26285 3213 Locate
trnC-GCA gene + 27425 27495 71 Locate
petN gene + 27659 27748 90 Locate
psbM gene − 28730 28834 105 Locate
trnD-GUC gene − 29345 29418 74 Locate
trnY-GUA gene − 29529 29612 84 Locate
trnE-UUC gene − 29683 29755 73 Locate
trnT-GGU gene + 30323 30394 72 Locate
psbD gene + 31742 32803 1062 Locate
psbC gene + 32751 34172 1422 Locate
trnS-UGA gene − 34418 34510 93 Locate
psbZ gene + 34765 35028 264 Locate
trnG-GCC gene + 35304 35374 71 Locate
trnfM-CAU gene − 35546 35619 74 Locate
rps14 gene − 35764 36066 303 Locate
psaB gene − 36188 38392 2205 Locate
psaA gene − 38418 40670 2253 Locate
ycf3 gene − 41458 43415 1958 Locate
trnS-GGA gene + 44266 44352 87 Locate
rps4 gene − 44620 45225 606 Locate
trnT-UGU gene − 45576 45648 73 Locate
trnL-UAA gene + 46341 46904 564 Locate
trnF-GAA gene + 47188 47260 73 Locate
ndhJ gene − 47908 48402 495 Locate
ndhK gene − 48495 49172 678 Locate
ndhC gene − 49224 49586 363 Locate
trnV-UAC gene − 50552 51200 649 Locate
trnM-CAU gene + 51381 51453 73 Locate
atpE gene − 51659 52060 402 Locate
atpB gene − 52057 53553 1497 Locate
rbcL gene + 54331 55785 1455 Locate
accD gene + 56485 57957 1473 Locate
psaI gene + 58426 58536 111 Locate
ycf4 gene + 58983 59537 555 Locate
cemA gene + 60181 60870 690 Locate
petA gene + 61079 62041 963 Locate
psbJ gene − 63039 63161 123 Locate
psbL gene − 63291 63407 117 Locate
psbF gene − 63431 63550 120 Locate
psbE gene − 63565 63816 252 Locate
petL gene + 64715 64810 96 Locate
petG gene + 64990 65103 114 Locate
trnW-CCA gene − 65219 65292 74 Locate
trnP-UGG gene − 65467 65540 74 Locate
psaJ gene + 65760 65945 186 Locate
rpl33 gene + 66392 66592 201 Locate
rps18 gene + 66763 67068 306 Locate
rpl20 gene − 67306 67692 387 Locate
rps12 gene − 68488 68601 114 Locate
clpP gene − 68724 70626 1903 Locate
psbB gene + 71080 72606 1527 Locate
psbT gene + 72790 72897 108 Locate
psbN gene − 72958 73089 132 Locate
psbH gene + 73177 73416 240 Locate
petB gene + 73542 74914 1373 Locate
petD gene + 75102 76292 1191 Locate
rpoA gene − 76469 77476 1008 Locate
rps11 gene − 77547 77963 417 Locate
rpl36 gene − 78073 78186 114 Locate
infA gene − 78282 78515 234 Locate
rps8 gene − 78636 79040 405 Locate
rpl14 gene − 79212 79580 369 Locate
rpl16 gene − 79710 80979 1270 Locate
rps3 gene − 81122 81784 663 Locate
rpl22 gene − 81769 82236 468 Locate
rps19 gene − 82300 82578 279 Locate
rpl2 gene − 82638 84125 1488 Locate
rpl23 gene − 84144 84425 282 Locate
trnI-CAU gene − 84591 84664 74 Locate
ycf2 gene + 84753 91586 6834 Locate
ycf15 gene + 91662 91925 264 Locate
trnL-CAA gene − 92181 92261 81 Locate
ndhB gene − 92818 95025 2208 Locate
rps7 gene − 95300 95767 468 Locate
rps12 gene − 95821 96614 794 Locate
trnV-GAC gene + 98222 98293 72 Locate
rrn16 gene + 98520 100010 1491 Locate
trnI-GAU gene + 100309 101328 1020 Locate
trnA-UGC gene + 101393 102270 878 Locate
rrn23 gene + 102431 105241 2811 Locate
rrn4.5 gene + 105342 105444 103 Locate
rrn5 gene + 105694 105814 121 Locate
trnR-ACG gene + 106058 106131 74 Locate
trnN-GUU gene − 106650 106721 72 Locate
ndhF gene − 108069 110336 2268 Locate
rpl32 gene + 110731 110928 198 Locate
trnL-UAG gene + 111654 111733 80 Locate
ccsA gene + 111831 112802 972 Locate
ndhD gene − 113031 114572 1542 Locate
psaC gene − 114666 114911 246 Locate
ndhE gene − 115162 115464 303 Locate
ndhG gene − 115697 116227 531 Locate
ndhI gene − 116601 117107 507 Locate
ndhA gene − 117188 119289 2102 Locate
ndhH gene − 119291 120526 1236 Locate
rps15 gene − 120572 120844 273 Locate
ycf1 gene − 121234 126864 5631 Locate
trnN-GUU gene + 127083 127154 72 Locate
trnR-ACG gene − 127673 127746 74 Locate
rrn5 gene − 127990 128110 121 Locate
rrn4.5 gene − 128360 128462 103 Locate
rrn23 gene − 128563 131373 2811 Locate
trnA-UGC gene − 131534 132411 878 Locate
trnI-GAU gene − 132476 133495 1020 Locate
rrn16 gene − 133794 135284 1491 Locate
trnV-GAC gene − 135511 135582 72 Locate
rps12 gene + 137190 137983 794 Locate
rps7 gene + 138037 138504 468 Locate
ndhB gene + 138779 140986 2208 Locate
trnL-CAA gene + 141543 141623 81 Locate
ycf15 gene − 141879 142142 264 Locate
ycf2 gene − 142218 149051 6834 Locate
trnI-CAU gene + 149140 149213 74 Locate
rpl23 gene + 149379 149660 282 Locate
rpl2 gene + 149679 151166 1488 Locate
Status Available
Accession NC_050900.1
Length 151,268 bp
GC content 37.9%
Annotated genes 132
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 14 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources