Salvia semiatrata chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
trnH-GUG · MT156370.1 · 2–75 bp · −
psbA · MT156370.1 · 395–1,453 bp · −
trnK-UUU · MT156370.1 · 1,685–4,250 bp · −
matK · MT156370.1 · 1,989–3,512 bp · −
rps16 · MT156370.1 · 4,820–5,924 bp · −
trnQ-UUG · MT156370.1 · 6,679–6,750 bp · −
trnS-GCU · MT156370.1 · 7,977–8,064 bp · −
atpA · MT156370.1 · 9,888–11,411 bp · −
atpF · MT156370.1 · 11,511–12,771 bp · −
atpH · MT156370.1 · 13,045–13,290 bp · −
atpI · MT156370.1 · 14,302–15,045 bp · −
rps2 · MT156370.1 · 15,272–15,982 bp · −
rpoC2 · MT156370.1 · 16,184–20,371 bp · −
rpoC1 · MT156370.1 · 20,537–23,369 bp · −
rpoB · MT156370.1 · 23,375–26,587 bp · −
psbM · MT156370.1 · 29,051–29,155 bp · −
trnD-GUC · MT156370.1 · 29,526–29,599 bp · −
trnY-GUA · MT156370.1 · 29,712–29,795 bp · −
trnE-UUC · MT156370.1 · 29,866–29,938 bp · −
trnS-UGA · MT156370.1 · 34,594–34,686 bp · −
trnfM-CAU · MT156370.1 · 35,707–35,780 bp · −
rps14 · MT156370.1 · 35,925–36,227 bp · −
psaB · MT156370.1 · 36,350–38,554 bp · −
psaA · MT156370.1 · 38,580–40,832 bp · −
ycf3 · MT156370.1 · 41,563–43,498 bp · −
rps4 · MT156370.1 · 44,688–45,293 bp · −
trnT-UGU · MT156370.1 · 45,653–45,725 bp · −
ndhJ · MT156370.1 · 47,803–48,279 bp · −
ndhK · MT156370.1 · 48,390–49,067 bp · −
ndhC · MT156370.1 · 49,119–49,481 bp · −
trnV-UAC · MT156370.1 · 50,286–50,931 bp · −
atpE · MT156370.1 · 51,374–51,775 bp · −
atpB · MT156370.1 · 51,772–53,268 bp · −
psbJ · MT156370.1 · 62,741–62,863 bp · −
psbL · MT156370.1 · 62,993–63,109 bp · −
psbF · MT156370.1 · 63,133–63,252 bp · −
psbE · MT156370.1 · 63,267–63,518 bp · −
trnW-CCA · MT156370.1 · 64,928–65,001 bp · −
trnP-UGG · MT156370.1 · 65,176–65,249 bp · −
rpl20 · MT156370.1 · 67,016–67,402 bp · −
rps12 · MT156370.1 · 68,209–68,322 bp · −
rps12 · MT156370.1 · 95,577–96,370 bp · −
clpP · MT156370.1 · 68,446–70,354 bp · −
psbN · MT156370.1 · 72,684–72,815 bp · −
rpoA · MT156370.1 · 76,187–77,194 bp · −
rps11 · MT156370.1 · 77,264–77,680 bp · −
rpl36 · MT156370.1 · 77,792–77,905 bp · −
infA · MT156370.1 · 78,001–78,234 bp · −
rps8 · MT156370.1 · 78,357–78,761 bp · −
rpl14 · MT156370.1 · 78,936–79,304 bp · −
rpl16 · MT156370.1 · 79,435–80,710 bp · −
rps3 · MT156370.1 · 80,853–81,515 bp · −
rpl22 · MT156370.1 · 81,500–81,967 bp · −
rps19 · MT156370.1 · 82,037–82,315 bp · −
rpl2 · MT156370.1 · 82,376–83,867 bp · −
rpl23 · MT156370.1 · 83,886–84,167 bp · −
trnI-CAU · MT156370.1 · 84,333–84,406 bp · −
trnL-CAA · MT156370.1 · 91,934–92,014 bp · −
ndhB · MT156370.1 · 92,574–94,727 bp · −
rps7 · MT156370.1 · 95,056–95,523 bp · −
trnN-GUU · MT156370.1 · 106,463–106,534 bp · −
ndhF · MT156370.1 · 107,882–110,113 bp · −
ndhD · MT156370.1 · 112,781–114,322 bp · −
psaC · MT156370.1 · 114,417–114,662 bp · −
ndhE · MT156370.1 · 114,913–115,218 bp · −
ndhG · MT156370.1 · 115,431–115,961 bp · −
ndhI · MT156370.1 · 116,324–116,830 bp · −
ndhA · MT156370.1 · 116,911–119,012 bp · −
ndhH · MT156370.1 · 119,014–120,195 bp · −
rps15 · MT156370.1 · 120,295–120,567 bp · −
ycf1 · MT156370.1 · 120,974–126,499 bp · −
trnR-ACG · MT156370.1 · 127,403–127,476 bp · −
rrn5 · MT156370.1 · 127,720–127,840 bp · −
rrn4.5 · MT156370.1 · 128,096–128,198 bp · −
rrn23 · MT156370.1 · 128,297–131,107 bp · −
trnA-UGC · MT156370.1 · 131,273–132,149 bp · −
trnI-GAU · MT156370.1 · 132,214–133,232 bp · −
rrn16 · MT156370.1 · 133,531–135,021 bp · −
trnV-GAC · MT156370.1 · 135,248–135,319 bp · −
ycf15 · MT156370.1 · 141,690–141,938 bp · −
ycf2 · MT156370.1 · 142,029–148,868 bp · −
psbK · MT156370.1 · 7,140–7,325 bp · +
psbI · MT156370.1 · 7,718–7,828 bp · +
trnG-UCC · MT156370.1 · 8,769–9,529 bp · +
trnR-UCU · MT156370.1 · 9,706–9,777 bp · +
trnC-GCA · MT156370.1 · 27,747–27,817 bp · +
petN · MT156370.1 · 27,973–28,062 bp · +
trnT-GGU · MT156370.1 · 30,480–30,551 bp · +
psbD · MT156370.1 · 31,924–32,985 bp · +
psbC · MT156370.1 · 32,933–34,354 bp · +
psbZ · MT156370.1 · 35,014–35,202 bp · +
trnG-GCC · MT156370.1 · 35,480–35,550 bp · +
trnS-GGA · MT156370.1 · 44,324–44,410 bp · +
trnL-UAA · MT156370.1 · 46,392–46,966 bp · +
trnF-GAA · MT156370.1 · 47,254–47,326 bp · +
trnM-CAU · MT156370.1 · 51,112–51,184 bp · +
rbcL · MT156370.1 · 54,070–55,503 bp · +
accD · MT156370.1 · 56,175–57,644 bp · +
psaI · MT156370.1 · 58,108–58,218 bp · +
ycf4 · MT156370.1 · 58,663–59,217 bp · +
cemA · MT156370.1 · 59,859–60,548 bp · +
petA · MT156370.1 · 60,770–61,732 bp · +
petL · MT156370.1 · 64,426–64,521 bp · +
petG · MT156370.1 · 64,700–64,813 bp · +
psaJ · MT156370.1 · 65,529–65,663 bp · +
rpl33 · MT156370.1 · 66,102–66,302 bp · +
rps18 · MT156370.1 · 66,475–66,780 bp · +
rps12 · MT156370.1 · 136,993–137,786 bp · +
psbB · MT156370.1 · 70,799–72,325 bp · +
psbT · MT156370.1 · 72,517–72,618 bp · +
psbH · MT156370.1 · 72,921–73,142 bp · +
petB · MT156370.1 · 73,276–74,638 bp · +
petD · MT156370.1 · 74,826–76,010 bp · +
ycf2 · MT156370.1 · 84,495–91,334 bp · +
ycf15 · MT156370.1 · 91,425–91,673 bp · +
trnV-GAC · MT156370.1 · 98,044–98,115 bp · +
rrn16 · MT156370.1 · 98,342–99,832 bp · +
trnI-GAU · MT156370.1 · 100,131–101,149 bp · +
trnA-UGC · MT156370.1 · 101,214–102,090 bp · +
rrn23 · MT156370.1 · 102,256–105,066 bp · +
rrn4.5 · MT156370.1 · 105,165–105,267 bp · +
rrn5 · MT156370.1 · 105,523–105,643 bp · +
trnR-ACG · MT156370.1 · 105,887–105,960 bp · +
ycf1 · MT156370.1 · 106,864–107,913 bp · +
rpl32 · MT156370.1 · 110,570–110,740 bp · +
trnL-UAG · MT156370.1 · 111,389–111,468 bp · +
ccsA · MT156370.1 · 111,565–112,542 bp · +
trnN-GUU · MT156370.1 · 126,829–126,900 bp · +
rps7 · MT156370.1 · 137,840–138,307 bp · +
ndhB · MT156370.1 · 138,636–140,789 bp · +
trnL-CAA · MT156370.1 · 141,349–141,429 bp · +
trnI-CAU · MT156370.1 · 148,957–149,030 bp · +
rpl23 · MT156370.1 · 149,196–149,477 bp · +
rpl2 · MT156370.1 · 149,496–150,987 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Salvia semiatrata
ANNOTATED PLASTOME
MT156370.1
151,036 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37759 75518 113277 151036 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 2 75 74 Locate
psbA gene − 395 1453 1059 Locate
trnK-UUU gene − 1685 4250 2566 Locate
matK gene − 1989 3512 1524 Locate
rps16 gene − 4820 5924 1105 Locate
trnQ-UUG gene − 6679 6750 72 Locate
psbK gene + 7140 7325 186 Locate
psbI gene + 7718 7828 111 Locate
trnS-GCU gene − 7977 8064 88 Locate
trnG-UCC gene + 8769 9529 761 Locate
trnR-UCU gene + 9706 9777 72 Locate
atpA gene − 9888 11411 1524 Locate
atpF gene − 11511 12771 1261 Locate
atpH gene − 13045 13290 246 Locate
atpI gene − 14302 15045 744 Locate
rps2 gene − 15272 15982 711 Locate
rpoC2 gene − 16184 20371 4188 Locate
rpoC1 gene − 20537 23369 2833 Locate
rpoB gene − 23375 26587 3213 Locate
trnC-GCA gene + 27747 27817 71 Locate
petN gene + 27973 28062 90 Locate
psbM gene − 29051 29155 105 Locate
trnD-GUC gene − 29526 29599 74 Locate
trnY-GUA gene − 29712 29795 84 Locate
trnE-UUC gene − 29866 29938 73 Locate
trnT-GGU gene + 30480 30551 72 Locate
psbD gene + 31924 32985 1062 Locate
psbC gene + 32933 34354 1422 Locate
trnS-UGA gene − 34594 34686 93 Locate
psbZ gene + 35014 35202 189 Locate
trnG-GCC gene + 35480 35550 71 Locate
trnfM-CAU gene − 35707 35780 74 Locate
rps14 gene − 35925 36227 303 Locate
psaB gene − 36350 38554 2205 Locate
psaA gene − 38580 40832 2253 Locate
ycf3 gene − 41563 43498 1936 Locate
trnS-GGA gene + 44324 44410 87 Locate
rps4 gene − 44688 45293 606 Locate
trnT-UGU gene − 45653 45725 73 Locate
trnL-UAA gene + 46392 46966 575 Locate
trnF-GAA gene + 47254 47326 73 Locate
ndhJ gene − 47803 48279 477 Locate
ndhK gene − 48390 49067 678 Locate
ndhC gene − 49119 49481 363 Locate
trnV-UAC gene − 50286 50931 646 Locate
trnM-CAU gene + 51112 51184 73 Locate
atpE gene − 51374 51775 402 Locate
atpB gene − 51772 53268 1497 Locate
rbcL gene + 54070 55503 1434 Locate
accD gene + 56175 57644 1470 Locate
psaI gene + 58108 58218 111 Locate
ycf4 gene + 58663 59217 555 Locate
cemA gene + 59859 60548 690 Locate
petA gene + 60770 61732 963 Locate
psbJ gene − 62741 62863 123 Locate
psbL gene − 62993 63109 117 Locate
psbF gene − 63133 63252 120 Locate
psbE gene − 63267 63518 252 Locate
petL gene + 64426 64521 96 Locate
petG gene + 64700 64813 114 Locate
trnW-CCA gene − 64928 65001 74 Locate
trnP-UGG gene − 65176 65249 74 Locate
psaJ gene + 65529 65663 135 Locate
rpl33 gene + 66102 66302 201 Locate
rps18 gene + 66475 66780 306 Locate
rpl20 gene − 67016 67402 387 Locate
rps12 gene − 68209 68322 114 Locate
clpP gene − 68446 70354 1909 Locate
psbB gene + 70799 72325 1527 Locate
psbT gene + 72517 72618 102 Locate
psbN gene − 72684 72815 132 Locate
psbH gene + 72921 73142 222 Locate
petB gene + 73276 74638 1363 Locate
petD gene + 74826 76010 1185 Locate
rpoA gene − 76187 77194 1008 Locate
rps11 gene − 77264 77680 417 Locate
rpl36 gene − 77792 77905 114 Locate
infA gene − 78001 78234 234 Locate
rps8 gene − 78357 78761 405 Locate
rpl14 gene − 78936 79304 369 Locate
rpl16 gene − 79435 80710 1276 Locate
rps3 gene − 80853 81515 663 Locate
rpl22 gene − 81500 81967 468 Locate
rps19 gene − 82037 82315 279 Locate
rpl2 gene − 82376 83867 1492 Locate
rpl23 gene − 83886 84167 282 Locate
trnI-CAU gene − 84333 84406 74 Locate
ycf2 gene + 84495 91334 6840 Locate
ycf15 gene + 91425 91673 249 Locate
trnL-CAA gene − 91934 92014 81 Locate
ndhB gene − 92574 94727 2154 Locate
rps7 gene − 95056 95523 468 Locate
rps12 gene − 95577 96370 794 Locate
trnV-GAC gene + 98044 98115 72 Locate
rrn16 gene + 98342 99832 1491 Locate
trnI-GAU gene + 100131 101149 1019 Locate
trnA-UGC gene + 101214 102090 877 Locate
rrn23 gene + 102256 105066 2811 Locate
rrn4.5 gene + 105165 105267 103 Locate
rrn5 gene + 105523 105643 121 Locate
trnR-ACG gene + 105887 105960 74 Locate
trnN-GUU gene − 106463 106534 72 Locate
ycf1 gene + 106864 107913 1050 Locate
ndhF gene − 107882 110113 2232 Locate
rpl32 gene + 110570 110740 171 Locate
trnL-UAG gene + 111389 111468 80 Locate
ccsA gene + 111565 112542 978 Locate
ndhD gene − 112781 114322 1542 Locate
psaC gene − 114417 114662 246 Locate
ndhE gene − 114913 115218 306 Locate
ndhG gene − 115431 115961 531 Locate
ndhI gene − 116324 116830 507 Locate
ndhA gene − 116911 119012 2102 Locate
ndhH gene − 119014 120195 1182 Locate
rps15 gene − 120295 120567 273 Locate
ycf1 gene − 120974 126499 5526 Locate
trnN-GUU gene + 126829 126900 72 Locate
trnR-ACG gene − 127403 127476 74 Locate
rrn5 gene − 127720 127840 121 Locate
rrn4.5 gene − 128096 128198 103 Locate
rrn23 gene − 128297 131107 2811 Locate
trnA-UGC gene − 131273 132149 877 Locate
trnI-GAU gene − 132214 133232 1019 Locate
rrn16 gene − 133531 135021 1491 Locate
trnV-GAC gene − 135248 135319 72 Locate
rps12 gene + 136993 137786 794 Locate
rps7 gene + 137840 138307 468 Locate
ndhB gene + 138636 140789 2154 Locate
trnL-CAA gene + 141349 141429 81 Locate
ycf15 gene − 141690 141938 249 Locate
ycf2 gene − 142029 148868 6840 Locate
trnI-CAU gene + 148957 149030 74 Locate
rpl23 gene + 149196 149477 282 Locate
rpl2 gene + 149496 150987 1492 Locate
Status Available
Accession MT156370.1
Length 151,036 bp
GC content 38.0%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 0
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources