Salvia sikkimensis chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
trnH-GUG · NC_071851.1 · 16–89 bp · −
psbA · NC_071851.1 · 398–1,456 bp · −
trnK-UUU · NC_071851.1 · 1,688–4,290 bp · −
matK · NC_071851.1 · 1,996–3,558 bp · −
rps16 · NC_071851.1 · 4,856–5,974 bp · −
trnQ-UUG · NC_071851.1 · 6,877–6,948 bp · −
trnS-GCU · NC_071851.1 · 8,138–8,225 bp · −
atpA · NC_071851.1 · 10,022–11,545 bp · −
atpF · NC_071851.1 · 11,648–12,891 bp · −
atpH · NC_071851.1 · 13,157–13,402 bp · −
atpI · NC_071851.1 · 14,400–15,143 bp · −
rps2 · NC_071851.1 · 15,369–16,079 bp · −
rpoC2 · NC_071851.1 · 16,287–20,471 bp · −
rpoC1 · NC_071851.1 · 20,629–23,470 bp · −
rpoB · NC_071851.1 · 23,476–26,688 bp · −
psbM · NC_071851.1 · 29,151–29,255 bp · −
trnD-GUC · NC_071851.1 · 29,774–29,847 bp · −
trnY-GUA · NC_071851.1 · 29,958–30,041 bp · −
trnE-UUC · NC_071851.1 · 30,113–30,185 bp · −
trnS-UGA · NC_071851.1 · 34,725–34,817 bp · −
trnfM-CAU · NC_071851.1 · 35,861–35,934 bp · −
rps14 · NC_071851.1 · 36,079–36,381 bp · −
psaB · NC_071851.1 · 36,504–38,708 bp · −
psaA · NC_071851.1 · 38,734–40,986 bp · −
ycf3 · NC_071851.1 · 41,740–43,667 bp · −
rps4 · NC_071851.1 · 44,848–45,453 bp · −
trnT-UGU · NC_071851.1 · 45,784–45,856 bp · −
ndhJ · NC_071851.1 · 47,971–48,447 bp · −
ndhK · NC_071851.1 · 48,558–49,235 bp · −
ndhC · NC_071851.1 · 49,287–49,649 bp · −
trnV-UAC · NC_071851.1 · 50,594–51,242 bp · −
atpE · NC_071851.1 · 51,715–52,116 bp · −
atpB · NC_071851.1 · 52,113–53,609 bp · −
psbJ · NC_071851.1 · 63,033–63,155 bp · −
psbL · NC_071851.1 · 63,285–63,401 bp · −
psbF · NC_071851.1 · 63,425–63,544 bp · −
psbE · NC_071851.1 · 63,559–63,810 bp · −
trnW-CCA · NC_071851.1 · 65,104–65,177 bp · −
trnP-UGG · NC_071851.1 · 65,359–65,432 bp · −
rpl20 · NC_071851.1 · 67,109–67,495 bp · −
rps12 · NC_071851.1 · 68,273–68,386 bp · −
rps12 · NC_071851.1 · 95,678–96,461 bp · −
clpP · NC_071851.1 · 68,515–70,413 bp · −
psbN · NC_071851.1 · 72,731–72,862 bp · −
rpoA · NC_071851.1 · 76,250–77,257 bp · −
rps11 · NC_071851.1 · 77,332–77,748 bp · −
rpl36 · NC_071851.1 · 77,858–77,971 bp · −
infA · NC_071851.1 · 78,067–78,300 bp · −
rps8 · NC_071851.1 · 78,428–78,832 bp · −
rpl14 · NC_071851.1 · 79,019–79,387 bp · −
rpl16 · NC_071851.1 · 79,519–80,796 bp · −
rps3 · NC_071851.1 · 80,941–81,603 bp · −
rpl22 · NC_071851.1 · 81,588–82,055 bp · −
rps19 · NC_071851.1 · 82,130–82,408 bp · −
rpl2 · NC_071851.1 · 82,470–83,952 bp · −
rpl23 · NC_071851.1 · 83,971–84,252 bp · −
trnI-CAU · NC_071851.1 · 84,418–84,491 bp · −
trnL-CAA · NC_071851.1 · 92,022–92,102 bp · −
ndhB · NC_071851.1 · 92,675–94,828 bp · −
rps7 · NC_071851.1 · 95,157–95,624 bp · −
trnN-GUU · NC_071851.1 · 106,501–106,572 bp · −
ndhF · NC_071851.1 · 107,926–110,142 bp · −
ndhD · NC_071851.1 · 112,838–114,238 bp · −
psaC · NC_071851.1 · 114,474–114,719 bp · −
ndhE · NC_071851.1 · 114,970–115,275 bp · −
ndhG · NC_071851.1 · 115,490–116,020 bp · −
ndhI · NC_071851.1 · 116,403–116,909 bp · −
ndhA · NC_071851.1 · 116,990–119,084 bp · −
ndhH · NC_071851.1 · 119,086–120,267 bp · −
rps15 · NC_071851.1 · 120,367–120,639 bp · −
ycf1 · NC_071851.1 · 121,047–126,572 bp · −
trnR-ACG · NC_071851.1 · 127,493–127,566 bp · −
rrn5 · NC_071851.1 · 127,810–127,930 bp · −
rrn4.5 · NC_071851.1 · 128,186–128,288 bp · −
rrn23 · NC_071851.1 · 128,387–131,197 bp · −
trnA-UGC · NC_071851.1 · 131,363–132,239 bp · −
trnI-GAU · NC_071851.1 · 132,304–133,316 bp · −
rrn16 · NC_071851.1 · 133,615–135,105 bp · −
trnV-GAC · NC_071851.1 · 135,332–135,403 bp · −
ycf15 · NC_071851.1 · 141,713–141,961 bp · −
ycf2 · NC_071851.1 · 142,052–148,894 bp · −
psbK · NC_071851.1 · 7,311–7,490 bp · +
psbI · NC_071851.1 · 7,884–7,994 bp · +
trnG-UCC · NC_071851.1 · 8,908–9,663 bp · +
trnR-UCU · NC_071851.1 · 9,845–9,916 bp · +
trnC-GCA · NC_071851.1 · 27,852–27,922 bp · +
petN · NC_071851.1 · 28,086–28,175 bp · +
trnT-GGU · NC_071851.1 · 30,724–30,795 bp · +
psbD · NC_071851.1 · 32,048–33,109 bp · +
psbC · NC_071851.1 · 33,057–34,478 bp · +
psbZ · NC_071851.1 · 35,143–35,331 bp · +
trnG-GCC · NC_071851.1 · 35,610–35,680 bp · +
trnS-GGA · NC_071851.1 · 44,485–44,571 bp · +
trnL-UAA · NC_071851.1 · 46,527–47,066 bp · +
trnF-GAA · NC_071851.1 · 47,365–47,437 bp · +
trnM-CAU · NC_071851.1 · 51,431–51,503 bp · +
rbcL · NC_071851.1 · 54,395–55,828 bp · +
accD · NC_071851.1 · 56,502–57,983 bp · +
psaI · NC_071851.1 · 58,433–58,543 bp · +
ycf4 · NC_071851.1 · 58,982–59,536 bp · +
cemA · NC_071851.1 · 60,190–60,879 bp · +
petA · NC_071851.1 · 61,112–62,074 bp · +
petL · NC_071851.1 · 64,617–64,712 bp · +
petG · NC_071851.1 · 64,876–64,989 bp · +
psaJ · NC_071851.1 · 65,694–65,828 bp · +
rpl33 · NC_071851.1 · 66,226–66,426 bp · +
rps18 · NC_071851.1 · 66,599–66,904 bp · +
rps12 · NC_071851.1 · 137,013–137,796 bp · +
psbB · NC_071851.1 · 70,856–72,382 bp · +
psbT · NC_071851.1 · 72,563–72,670 bp · +
psbH · NC_071851.1 · 72,976–73,197 bp · +
petB · NC_071851.1 · 73,330–74,689 bp · +
petD · NC_071851.1 · 74,877–76,073 bp · +
ycf2 · NC_071851.1 · 84,580–91,422 bp · +
ycf15 · NC_071851.1 · 91,513–91,761 bp · +
trnV-GAC · NC_071851.1 · 98,071–98,142 bp · +
rrn16 · NC_071851.1 · 98,369–99,859 bp · +
trnI-GAU · NC_071851.1 · 100,158–101,170 bp · +
trnA-UGC · NC_071851.1 · 101,235–102,111 bp · +
rrn23 · NC_071851.1 · 102,277–105,087 bp · +
rrn4.5 · NC_071851.1 · 105,186–105,288 bp · +
rrn5 · NC_071851.1 · 105,544–105,664 bp · +
trnR-ACG · NC_071851.1 · 105,908–105,981 bp · +
ycf1 · NC_071851.1 · 106,902–108,059 bp · +
rpl32 · NC_071851.1 · 110,579–110,749 bp · +
trnL-UAG · NC_071851.1 · 111,457–111,536 bp · +
ccsA · NC_071851.1 · 111,629–112,606 bp · +
trnN-GUU · NC_071851.1 · 126,902–126,973 bp · +
rps7 · NC_071851.1 · 137,850–138,317 bp · +
ndhB · NC_071851.1 · 138,646–140,799 bp · +
trnL-CAA · NC_071851.1 · 141,372–141,452 bp · +
trnI-CAU · NC_071851.1 · 148,983–149,056 bp · +
rpl23 · NC_071851.1 · 149,222–149,503 bp · +
rpl2 · NC_071851.1 · 149,522–151,004 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Salvia sikkimensis
ANNOTATED PLASTOME
NC_071851.1
151,104 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37776 75552 113328 151104 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 16 89 74 Locate
psbA gene − 398 1456 1059 Locate
trnK-UUU gene − 1688 4290 2603 Locate
matK gene − 1996 3558 1563 Locate
rps16 gene − 4856 5974 1119 Locate
trnQ-UUG gene − 6877 6948 72 Locate
psbK gene + 7311 7490 180 Locate
psbI gene + 7884 7994 111 Locate
trnS-GCU gene − 8138 8225 88 Locate
trnG-UCC gene + 8908 9663 756 Locate
trnR-UCU gene + 9845 9916 72 Locate
atpA gene − 10022 11545 1524 Locate
atpF gene − 11648 12891 1244 Locate
atpH gene − 13157 13402 246 Locate
atpI gene − 14400 15143 744 Locate
rps2 gene − 15369 16079 711 Locate
rpoC2 gene − 16287 20471 4185 Locate
rpoC1 gene − 20629 23470 2842 Locate
rpoB gene − 23476 26688 3213 Locate
trnC-GCA gene + 27852 27922 71 Locate
petN gene + 28086 28175 90 Locate
psbM gene − 29151 29255 105 Locate
trnD-GUC gene − 29774 29847 74 Locate
trnY-GUA gene − 29958 30041 84 Locate
trnE-UUC gene − 30113 30185 73 Locate
trnT-GGU gene + 30724 30795 72 Locate
psbD gene + 32048 33109 1062 Locate
psbC gene + 33057 34478 1422 Locate
trnS-UGA gene − 34725 34817 93 Locate
psbZ gene + 35143 35331 189 Locate
trnG-GCC gene + 35610 35680 71 Locate
trnfM-CAU gene − 35861 35934 74 Locate
rps14 gene − 36079 36381 303 Locate
psaB gene − 36504 38708 2205 Locate
psaA gene − 38734 40986 2253 Locate
ycf3 gene − 41740 43667 1928 Locate
trnS-GGA gene + 44485 44571 87 Locate
rps4 gene − 44848 45453 606 Locate
trnT-UGU gene − 45784 45856 73 Locate
trnL-UAA gene + 46527 47066 540 Locate
trnF-GAA gene + 47365 47437 73 Locate
ndhJ gene − 47971 48447 477 Locate
ndhK gene − 48558 49235 678 Locate
ndhC gene − 49287 49649 363 Locate
trnV-UAC gene − 50594 51242 649 Locate
trnM-CAU gene + 51431 51503 73 Locate
atpE gene − 51715 52116 402 Locate
atpB gene − 52113 53609 1497 Locate
rbcL gene + 54395 55828 1434 Locate
accD gene + 56502 57983 1482 Locate
psaI gene + 58433 58543 111 Locate
ycf4 gene + 58982 59536 555 Locate
cemA gene + 60190 60879 690 Locate
petA gene + 61112 62074 963 Locate
psbJ gene − 63033 63155 123 Locate
psbL gene − 63285 63401 117 Locate
psbF gene − 63425 63544 120 Locate
psbE gene − 63559 63810 252 Locate
petL gene + 64617 64712 96 Locate
petG gene + 64876 64989 114 Locate
trnW-CCA gene − 65104 65177 74 Locate
trnP-UGG gene − 65359 65432 74 Locate
psaJ gene + 65694 65828 135 Locate
rpl33 gene + 66226 66426 201 Locate
rps18 gene + 66599 66904 306 Locate
rpl20 gene − 67109 67495 387 Locate
rps12 gene − 68273 68386 114 Locate
clpP gene − 68515 70413 1899 Locate
psbB gene + 70856 72382 1527 Locate
psbT gene + 72563 72670 108 Locate
psbN gene − 72731 72862 132 Locate
psbH gene + 72976 73197 222 Locate
petB gene + 73330 74689 1360 Locate
petD gene + 74877 76073 1197 Locate
rpoA gene − 76250 77257 1008 Locate
rps11 gene − 77332 77748 417 Locate
rpl36 gene − 77858 77971 114 Locate
infA gene − 78067 78300 234 Locate
rps8 gene − 78428 78832 405 Locate
rpl14 gene − 79019 79387 369 Locate
rpl16 gene − 79519 80796 1278 Locate
rps3 gene − 80941 81603 663 Locate
rpl22 gene − 81588 82055 468 Locate
rps19 gene − 82130 82408 279 Locate
rpl2 gene − 82470 83952 1483 Locate
rpl23 gene − 83971 84252 282 Locate
trnI-CAU gene − 84418 84491 74 Locate
ycf2 gene + 84580 91422 6843 Locate
ycf15 gene + 91513 91761 249 Locate
trnL-CAA gene − 92022 92102 81 Locate
ndhB gene − 92675 94828 2154 Locate
rps7 gene − 95157 95624 468 Locate
rps12 gene − 95678 96461 784 Locate
trnV-GAC gene + 98071 98142 72 Locate
rrn16 gene + 98369 99859 1491 Locate
trnI-GAU gene + 100158 101170 1013 Locate
trnA-UGC gene + 101235 102111 877 Locate
rrn23 gene + 102277 105087 2811 Locate
rrn4.5 gene + 105186 105288 103 Locate
rrn5 gene + 105544 105664 121 Locate
trnR-ACG gene + 105908 105981 74 Locate
trnN-GUU gene − 106501 106572 72 Locate
ycf1 gene + 106902 108059 1158 Locate
ndhF gene − 107926 110142 2217 Locate
rpl32 gene + 110579 110749 171 Locate
trnL-UAG gene + 111457 111536 80 Locate
ccsA gene + 111629 112606 978 Locate
ndhD gene − 112838 114238 1401 Locate
psaC gene − 114474 114719 246 Locate
ndhE gene − 114970 115275 306 Locate
ndhG gene − 115490 116020 531 Locate
ndhI gene − 116403 116909 507 Locate
ndhA gene − 116990 119084 2095 Locate
ndhH gene − 119086 120267 1182 Locate
rps15 gene − 120367 120639 273 Locate
ycf1 gene − 121047 126572 5526 Locate
trnN-GUU gene + 126902 126973 72 Locate
trnR-ACG gene − 127493 127566 74 Locate
rrn5 gene − 127810 127930 121 Locate
rrn4.5 gene − 128186 128288 103 Locate
rrn23 gene − 128387 131197 2811 Locate
trnA-UGC gene − 131363 132239 877 Locate
trnI-GAU gene − 132304 133316 1013 Locate
rrn16 gene − 133615 135105 1491 Locate
trnV-GAC gene − 135332 135403 72 Locate
rps12 gene + 137013 137796 784 Locate
rps7 gene + 137850 138317 468 Locate
ndhB gene + 138646 140799 2154 Locate
trnL-CAA gene + 141372 141452 81 Locate
ycf15 gene − 141713 141961 249 Locate
ycf2 gene − 142052 148894 6843 Locate
trnI-CAU gene + 148983 149056 74 Locate
rpl23 gene + 149222 149503 282 Locate
rpl2 gene + 149522 151004 1483 Locate
Status Available
Accession NC_071851.1
Length 151,104 bp
GC content 38.0%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 0
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources