Salvia submutica chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PV601299.1 · 2–76 bp · −
psbA · PV601299.1 · 371–1,429 bp · −
trnK-UUU · PV601299.1 · 1,657–4,242 bp · −
matK · PV601299.1 · 1,978–3,507 bp · −
rps16 · PV601299.1 · 4,817–5,920 bp · −
trnQ-UUG · PV601299.1 · 6,861–6,932 bp · −
trnS-GCU · PV601299.1 · 8,149–8,236 bp · −
atpA · PV601299.1 · 10,036–11,559 bp · −
atpF · PV601299.1 · 11,654–12,904 bp · −
atpH · PV601299.1 · 13,161–13,406 bp · −
atpI · PV601299.1 · 14,422–15,165 bp · −
rps2 · PV601299.1 · 15,392–16,102 bp · −
rpoC2 · PV601299.1 · 16,314–20,501 bp · −
rpoC1 · PV601299.1 · 20,668–23,491 bp · −
rpoB · PV601299.1 · 23,518–26,730 bp · −
psbM · PV601299.1 · 29,190–29,294 bp · −
trnD-GUC · PV601299.1 · 29,803–29,876 bp · −
trnY-GUA · PV601299.1 · 29,993–30,076 bp · −
trnE-UUC · PV601299.1 · 30,142–30,214 bp · −
trnS-UGA · PV601299.1 · 34,897–34,989 bp · −
trnfM-CAU · PV601299.1 · 36,030–36,103 bp · −
rps14 · PV601299.1 · 36,254–36,556 bp · −
psaB · PV601299.1 · 36,674–38,878 bp · −
psaA · PV601299.1 · 38,904–41,156 bp · −
ycf3 · PV601299.1 · 41,906–43,834 bp · −
rps4 · PV601299.1 · 45,021–45,626 bp · −
trnT-UGU · PV601299.1 · 45,976–46,048 bp · −
ndhJ · PV601299.1 · 48,228–48,722 bp · −
ndhK · PV601299.1 · 48,815–49,492 bp · −
ndhC · PV601299.1 · 49,544–49,906 bp · −
trnV-UAC · PV601299.1 · 50,866–51,522 bp · −
atpE · PV601299.1 · 51,971–52,372 bp · −
atpB · PV601299.1 · 52,369–53,865 bp · −
psbJ · PV601299.1 · 63,297–63,419 bp · −
psbL · PV601299.1 · 63,554–63,670 bp · −
psbF · PV601299.1 · 63,694–63,813 bp · −
psbE · PV601299.1 · 63,828–64,079 bp · −
trnW-CCA · PV601299.1 · 65,465–65,538 bp · −
trnP-UGG · PV601299.1 · 65,704–65,777 bp · −
rpl20 · PV601299.1 · 67,544–67,930 bp · −
rps12 · PV601299.1 · 68,719–68,832 bp · −
rps12 · PV601299.1 · 96,089–96,882 bp · −
clpP · PV601299.1 · 68,960–70,869 bp · −
psbN · PV601299.1 · 73,186–73,317 bp · −
rpoA · PV601299.1 · 76,704–77,711 bp · −
rps11 · PV601299.1 · 77,787–78,191 bp · −
rpl36 · PV601299.1 · 78,301–78,414 bp · −
infA · PV601299.1 · 78,510–78,743 bp · −
rps8 · PV601299.1 · 78,876–79,280 bp · −
rpl14 · PV601299.1 · 79,450–79,818 bp · −
rpl16 · PV601299.1 · 79,949–81,202 bp · −
rps3 · PV601299.1 · 81,338–82,000 bp · −
rpl22 · PV601299.1 · 81,985–82,452 bp · −
rps19 · PV601299.1 · 82,522–82,800 bp · −
rpl2 · PV601299.1 · 82,860–84,344 bp · −
rpl23 · PV601299.1 · 84,363–84,644 bp · −
trnI-CAU · PV601299.1 · 84,810–84,883 bp · −
trnL-CAA · PV601299.1 · 92,435–92,515 bp · −
ndhB · PV601299.1 · 93,074–95,239 bp · −
rps7 · PV601299.1 · 95,568–96,035 bp · −
trnN-GUU · PV601299.1 · 106,940–107,011 bp · −
ndhF · PV601299.1 · 108,067–110,304 bp · −
ndhD · PV601299.1 · 113,009–114,505 bp · −
psaC · PV601299.1 · 114,632–114,877 bp · −
ndhE · PV601299.1 · 115,128–115,433 bp · −
ndhG · PV601299.1 · 115,647–116,177 bp · −
ndhI · PV601299.1 · 116,548–117,054 bp · −
ndhA · PV601299.1 · 117,135–119,232 bp · −
ndhH · PV601299.1 · 119,234–120,415 bp · −
rps15 · PV601299.1 · 120,519–120,791 bp · −
ycf1 · PV601299.1 · 121,205–126,835 bp · −
trnR-ACG · PV601299.1 · 127,648–127,721 bp · −
rrn5 · PV601299.1 · 127,966–128,086 bp · −
rrn4.5 · PV601299.1 · 128,342–128,444 bp · −
rrn23 · PV601299.1 · 128,543–131,352 bp · −
trnA-UGC · PV601299.1 · 131,505–132,376 bp · −
trnI-GAU · PV601299.1 · 132,441–133,459 bp · −
rrn16 · PV601299.1 · 133,758–135,248 bp · −
trnV-GAC · PV601299.1 · 135,475–135,546 bp · −
ycf15 · PV601299.1 · 141,890–142,153 bp · −
ycf2 · PV601299.1 · 142,229–149,092 bp · −
psbK · PV601299.1 · 7,306–7,500 bp · +
psbI · PV601299.1 · 7,878–7,988 bp · +
trnG-UCC · PV601299.1 · 8,937–9,686 bp · +
trnR-UCU · PV601299.1 · 9,858–9,929 bp · +
trnC-GCA · PV601299.1 · 27,889–27,959 bp · +
petN · PV601299.1 · 28,123–28,212 bp · +
trnT-GGU · PV601299.1 · 30,783–30,854 bp · +
psbD · PV601299.1 · 32,220–33,281 bp · +
psbC · PV601299.1 · 33,229–34,650 bp · +
psbZ · PV601299.1 · 35,243–35,506 bp · +
trnG-GCC · PV601299.1 · 35,777–35,847 bp · +
trnS-GGA · PV601299.1 · 44,653–44,739 bp · +
trnL-UAA · PV601299.1 · 46,752–47,324 bp · +
trnF-GAA · PV601299.1 · 47,623–47,695 bp · +
trnM-CAU · PV601299.1 · 51,703–51,775 bp · +
rbcL · PV601299.1 · 54,638–56,092 bp · +
accD · PV601299.1 · 56,726–58,165 bp · +
psaI · PV601299.1 · 58,629–58,739 bp · +
ycf4 · PV601299.1 · 59,182–59,736 bp · +
cemA · PV601299.1 · 60,388–61,077 bp · +
petA · PV601299.1 · 61,299–62,261 bp · +
petL · PV601299.1 · 64,974–65,069 bp · +
petG · PV601299.1 · 65,248–65,361 bp · +
psaJ · PV601299.1 · 66,048–66,182 bp · +
rpl33 · PV601299.1 · 66,630–66,830 bp · +
rps18 · PV601299.1 · 67,005–67,310 bp · +
rps12 · PV601299.1 · 137,182–137,975 bp · +
psbB · PV601299.1 · 71,308–72,834 bp · +
psbT · PV601299.1 · 73,022–73,129 bp · +
psbH · PV601299.1 · 73,405–73,644 bp · +
petB · PV601299.1 · 73,770–75,157 bp · +
petD · PV601299.1 · 75,345–76,527 bp · +
ycf2 · PV601299.1 · 84,972–91,835 bp · +
ycf15 · PV601299.1 · 91,911–92,174 bp · +
trnV-GAC · PV601299.1 · 98,518–98,589 bp · +
rrn16 · PV601299.1 · 98,816–100,306 bp · +
trnI-GAU · PV601299.1 · 100,605–101,623 bp · +
trnA-UGC · PV601299.1 · 101,688–102,559 bp · +
rrn23 · PV601299.1 · 102,712–105,521 bp · +
rrn4.5 · PV601299.1 · 105,620–105,722 bp · +
rrn5 · PV601299.1 · 105,978–106,098 bp · +
trnR-ACG · PV601299.1 · 106,343–106,416 bp · +
ycf1 · PV601299.1 · 107,340–108,206 bp · +
rpl32 · PV601299.1 · 110,744–110,923 bp · +
trnL-UAG · PV601299.1 · 111,628–111,707 bp · +
ccsA · PV601299.1 · 111,805–112,782 bp · +
trnN-GUU · PV601299.1 · 127,053–127,124 bp · +
rps7 · PV601299.1 · 138,029–138,496 bp · +
ndhB · PV601299.1 · 138,825–140,990 bp · +
trnL-CAA · PV601299.1 · 141,549–141,629 bp · +
trnI-CAU · PV601299.1 · 149,181–149,254 bp · +
rpl23 · PV601299.1 · 149,420–149,701 bp · +
rpl2 · PV601299.1 · 149,720–151,204 bp · +
rps19 · PV601299.1 · 151,264–151,319 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Salvia submutica
ANNOTATED PLASTOME
PV601299.1
151,319 bp · 134 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37830 75660 113489 151319 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2 rps19
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
135 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 2 76 75 Locate
psbA gene − 371 1429 1059 Locate
trnK-UUU gene − 1657 4242 2586 Locate
matK gene − 1978 3507 1530 Locate
rps16 gene − 4817 5920 1104 Locate
trnQ-UUG gene − 6861 6932 72 Locate
psbK gene + 7306 7500 195 Locate
psbI gene + 7878 7988 111 Locate
trnS-GCU gene − 8149 8236 88 Locate
trnG-UCC gene + 8937 9686 750 Locate
trnR-UCU gene + 9858 9929 72 Locate
atpA gene − 10036 11559 1524 Locate
atpF gene − 11654 12904 1251 Locate
atpH gene − 13161 13406 246 Locate
atpI gene − 14422 15165 744 Locate
rps2 gene − 15392 16102 711 Locate
rpoC2 gene − 16314 20501 4188 Locate
rpoC1 gene − 20668 23491 2824 Locate
rpoB gene − 23518 26730 3213 Locate
trnC-GCA gene + 27889 27959 71 Locate
petN gene + 28123 28212 90 Locate
psbM gene − 29190 29294 105 Locate
trnD-GUC gene − 29803 29876 74 Locate
trnY-GUA gene − 29993 30076 84 Locate
trnE-UUC gene − 30142 30214 73 Locate
trnT-GGU gene + 30783 30854 72 Locate
psbD gene + 32220 33281 1062 Locate
psbC gene + 33229 34650 1422 Locate
trnS-UGA gene − 34897 34989 93 Locate
psbZ gene + 35243 35506 264 Locate
trnG-GCC gene + 35777 35847 71 Locate
trnfM-CAU gene − 36030 36103 74 Locate
rps14 gene − 36254 36556 303 Locate
psaB gene − 36674 38878 2205 Locate
psaA gene − 38904 41156 2253 Locate
ycf3 gene − 41906 43834 1929 Locate
trnS-GGA gene + 44653 44739 87 Locate
rps4 gene − 45021 45626 606 Locate
trnT-UGU gene − 45976 46048 73 Locate
trnL-UAA gene + 46752 47324 573 Locate
trnF-GAA gene + 47623 47695 73 Locate
ndhJ gene − 48228 48722 495 Locate
ndhK gene − 48815 49492 678 Locate
ndhC gene − 49544 49906 363 Locate
trnV-UAC gene − 50866 51522 657 Locate
trnM-CAU gene + 51703 51775 73 Locate
atpE gene − 51971 52372 402 Locate
atpB gene − 52369 53865 1497 Locate
rbcL gene + 54638 56092 1455 Locate
accD gene + 56726 58165 1440 Locate
psaI gene + 58629 58739 111 Locate
ycf4 gene + 59182 59736 555 Locate
cemA gene + 60388 61077 690 Locate
petA gene + 61299 62261 963 Locate
psbJ gene − 63297 63419 123 Locate
psbL gene − 63554 63670 117 Locate
psbF gene − 63694 63813 120 Locate
psbE gene − 63828 64079 252 Locate
petL gene + 64974 65069 96 Locate
petG gene + 65248 65361 114 Locate
trnW-CCA gene − 65465 65538 74 Locate
trnP-UGG gene − 65704 65777 74 Locate
psaJ gene + 66048 66182 135 Locate
rpl33 gene + 66630 66830 201 Locate
rps18 gene + 67005 67310 306 Locate
rpl20 gene − 67544 67930 387 Locate
rps12 gene − 68719 68832 114 Locate
clpP gene − 68960 70869 1910 Locate
psbB gene + 71308 72834 1527 Locate
psbT gene + 73022 73129 108 Locate
psbN gene − 73186 73317 132 Locate
psbH gene + 73405 73644 240 Locate
petB gene + 73770 75157 1388 Locate
petD gene + 75345 76527 1183 Locate
rpoA gene − 76704 77711 1008 Locate
rps11 gene − 77787 78191 405 Locate
rpl36 gene − 78301 78414 114 Locate
infA gene − 78510 78743 234 Locate
rps8 gene − 78876 79280 405 Locate
rpl14 gene − 79450 79818 369 Locate
rpl16 gene − 79949 81202 1254 Locate
rps3 gene − 81338 82000 663 Locate
rpl22 gene − 81985 82452 468 Locate
rps19 gene − 82522 82800 279 Locate
rpl2 gene − 82860 84344 1485 Locate
rpl23 gene − 84363 84644 282 Locate
trnI-CAU gene − 84810 84883 74 Locate
ycf2 gene + 84972 91835 6864 Locate
ycf15 gene + 91911 92174 264 Locate
trnL-CAA gene − 92435 92515 81 Locate
ndhB gene − 93074 95239 2166 Locate
rps7 gene − 95568 96035 468 Locate
rps12 gene − 96089 96882 794 Locate
trnV-GAC gene + 98518 98589 72 Locate
rrn16 gene + 98816 100306 1491 Locate
trnI-GAU gene + 100605 101623 1019 Locate
trnA-UGC gene + 101688 102559 872 Locate
rrn23 gene + 102712 105521 2810 Locate
rrn4.5 gene + 105620 105722 103 Locate
rrn5 gene + 105978 106098 121 Locate
trnR-ACG gene + 106343 106416 74 Locate
trnN-GUU gene − 106940 107011 72 Locate
ycf1 gene + 107340 108206 867 Locate
ndhF gene − 108067 110304 2238 Locate
rpl32 gene + 110744 110923 180 Locate
trnL-UAG gene + 111628 111707 80 Locate
ccsA gene + 111805 112782 978 Locate
ndhD gene − 113009 114505 1497 Locate
psaC gene − 114632 114877 246 Locate
ndhE gene − 115128 115433 306 Locate
ndhG gene − 115647 116177 531 Locate
ndhI gene − 116548 117054 507 Locate
ndhA gene − 117135 119232 2098 Locate
ndhH gene − 119234 120415 1182 Locate
rps15 gene − 120519 120791 273 Locate
ycf1 gene − 121205 126835 5631 Locate
trnN-GUU gene + 127053 127124 72 Locate
trnR-ACG gene − 127648 127721 74 Locate
rrn5 gene − 127966 128086 121 Locate
rrn4.5 gene − 128342 128444 103 Locate
rrn23 gene − 128543 131352 2810 Locate
trnA-UGC gene − 131505 132376 872 Locate
trnI-GAU gene − 132441 133459 1019 Locate
rrn16 gene − 133758 135248 1491 Locate
trnV-GAC gene − 135475 135546 72 Locate
rps12 gene + 137182 137975 794 Locate
rps7 gene + 138029 138496 468 Locate
ndhB gene + 138825 140990 2166 Locate
trnL-CAA gene + 141549 141629 81 Locate
ycf15 gene − 141890 142153 264 Locate
ycf2 gene − 142229 149092 6864 Locate
trnI-CAU gene + 149181 149254 74 Locate
rpl23 gene + 149420 149701 282 Locate
rpl2 gene + 149720 151204 1485 Locate
rps19 gene + 151264 151319 56 Locate
Status Available
Accession PV601299.1
Length 151,319 bp
GC content 38.0%
Annotated genes 134
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 27 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources