Salvia substolonifera chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · NC_061230.1 · 12–85 bp · −
psbA · NC_061230.1 · 394–1,452 bp · −
trnK-UUU · NC_061230.1 · 1,684–4,286 bp · −
matK · NC_061230.1 · 1,992–3,554 bp · −
rps16 · NC_061230.1 · 4,852–5,964 bp · −
trnQ-UUG · NC_061230.1 · 6,974–7,045 bp · −
trnS-GCU · NC_061230.1 · 8,258–8,345 bp · −
atpA · NC_061230.1 · 10,141–11,664 bp · −
atpF · NC_061230.1 · 11,768–13,011 bp · −
atpH · NC_061230.1 · 13,281–13,526 bp · −
atpI · NC_061230.1 · 14,526–15,269 bp · −
rps2 · NC_061230.1 · 15,495–16,205 bp · −
rpoC2 · NC_061230.1 · 16,415–20,593 bp · −
rpoC1 · NC_061230.1 · 20,745–23,565 bp · −
rpoB · NC_061230.1 · 23,592–26,804 bp · −
psbM · NC_061230.1 · 29,266–29,370 bp · −
trnD-GUC · NC_061230.1 · 29,887–29,960 bp · −
trnY-GUA · NC_061230.1 · 30,071–30,154 bp · −
trnE-UUC · NC_061230.1 · 30,221–30,293 bp · −
trnS-UGA · NC_061230.1 · 34,834–34,926 bp · −
trnfM-CAU · NC_061230.1 · 35,953–36,026 bp · −
rps14 · NC_061230.1 · 36,176–36,478 bp · −
psaB · NC_061230.1 · 36,601–38,805 bp · −
psaA · NC_061230.1 · 38,831–41,083 bp · −
ycf3 · NC_061230.1 · 41,837–43,763 bp · −
rps4 · NC_061230.1 · 44,942–45,547 bp · −
trnT-UGU · NC_061230.1 · 45,918–45,990 bp · −
ndhJ · NC_061230.1 · 48,127–48,603 bp · −
ndhK · NC_061230.1 · 48,714–49,391 bp · −
ndhC · NC_061230.1 · 49,443–49,805 bp · −
trnV-UAC · NC_061230.1 · 50,756–51,404 bp · −
atpE · NC_061230.1 · 51,853–52,254 bp · −
atpB · NC_061230.1 · 52,251–53,747 bp · −
psbJ · NC_061230.1 · 63,194–63,316 bp · −
psbL · NC_061230.1 · 63,446–63,562 bp · −
psbF · NC_061230.1 · 63,586–63,705 bp · −
psbE · NC_061230.1 · 63,720–63,971 bp · −
trnW-CCA · NC_061230.1 · 65,279–65,352 bp · −
trnP-UGG · NC_061230.1 · 65,531–65,604 bp · −
rpl20 · NC_061230.1 · 67,390–67,776 bp · −
rps12 · NC_061230.1 · 68,595–68,708 bp · −
rps12 · NC_061230.1 · 95,917–96,710 bp · −
clpP · NC_061230.1 · 68,832–70,730 bp · −
psbN · NC_061230.1 · 73,042–73,173 bp · −
rpoA · NC_061230.1 · 76,535–77,542 bp · −
rps11 · NC_061230.1 · 77,615–78,031 bp · −
rpl36 · NC_061230.1 · 78,141–78,254 bp · −
infA · NC_061230.1 · 78,350–78,583 bp · −
rps8 · NC_061230.1 · 78,711–79,115 bp · −
rpl14 · NC_061230.1 · 79,300–79,668 bp · −
rpl16 · NC_061230.1 · 79,800–81,074 bp · −
rps3 · NC_061230.1 · 81,210–81,872 bp · −
rpl22 · NC_061230.1 · 81,857–82,324 bp · −
rps19 · NC_061230.1 · 82,399–82,677 bp · −
rpl2 · NC_061230.1 · 82,737–84,219 bp · −
rpl23 · NC_061230.1 · 84,238–84,519 bp · −
trnI-CAU · NC_061230.1 · 84,689–84,762 bp · −
trnL-CAA · NC_061230.1 · 92,284–92,364 bp · −
ndhB · NC_061230.1 · 92,924–95,077 bp · −
rps7 · NC_061230.1 · 95,396–95,863 bp · −
trnN-GUU · NC_061230.1 · 106,773–106,844 bp · −
ndhF · NC_061230.1 · 108,198–110,414 bp · −
ndhD · NC_061230.1 · 113,090–114,631 bp · −
psaC · NC_061230.1 · 114,731–114,976 bp · −
ndhE · NC_061230.1 · 115,227–115,532 bp · −
ndhG · NC_061230.1 · 115,749–116,279 bp · −
ndhI · NC_061230.1 · 116,662–117,168 bp · −
ndhA · NC_061230.1 · 117,250–119,343 bp · −
ndhH · NC_061230.1 · 119,345–120,526 bp · −
rps15 · NC_061230.1 · 120,626–120,898 bp · −
ycf1 · NC_061230.1 · 121,306–126,951 bp · −
trnR-ACG · NC_061230.1 · 127,761–127,834 bp · −
rrn5 · NC_061230.1 · 128,078–128,198 bp · −
rrn4.5 · NC_061230.1 · 128,475–128,577 bp · −
rrn23 · NC_061230.1 · 128,676–131,487 bp · −
trnA-UGC · NC_061230.1 · 131,653–132,530 bp · −
trnI-GAU · NC_061230.1 · 132,595–133,607 bp · −
rrn16 · NC_061230.1 · 133,906–135,396 bp · −
trnV-GAC · NC_061230.1 · 135,623–135,694 bp · −
ycf15 · NC_061230.1 · 141,991–142,239 bp · −
ycf2 · NC_061230.1 · 142,330–149,163 bp · −
psbK · NC_061230.1 · 7,432–7,611 bp · +
psbI · NC_061230.1 · 8,005–8,115 bp · +
trnG-UCC · NC_061230.1 · 9,029–9,781 bp · +
trnR-UCU · NC_061230.1 · 9,963–10,034 bp · +
trnC-GCA · NC_061230.1 · 27,967–28,037 bp · +
petN · NC_061230.1 · 28,201–28,290 bp · +
trnT-GGU · NC_061230.1 · 30,832–30,903 bp · +
psbD · NC_061230.1 · 32,152–33,213 bp · +
psbC · NC_061230.1 · 33,161–34,582 bp · +
psbZ · NC_061230.1 · 35,253–35,441 bp · +
trnG-GCC · NC_061230.1 · 35,719–35,789 bp · +
trnS-GGA · NC_061230.1 · 44,579–44,665 bp · +
trnL-UAA · NC_061230.1 · 46,661–47,201 bp · +
trnF-GAA · NC_061230.1 · 47,521–47,593 bp · +
trnM-CAU · NC_061230.1 · 51,585–51,657 bp · +
rbcL · NC_061230.1 · 54,521–55,954 bp · +
accD · NC_061230.1 · 56,676–58,193 bp · +
psaI · NC_061230.1 · 58,539–58,649 bp · +
ycf4 · NC_061230.1 · 59,096–59,650 bp · +
cemA · NC_061230.1 · 60,258–60,947 bp · +
petA · NC_061230.1 · 61,174–62,136 bp · +
petL · NC_061230.1 · 64,777–64,872 bp · +
petG · NC_061230.1 · 65,051–65,164 bp · +
psaJ · NC_061230.1 · 65,896–66,030 bp · +
rpl33 · NC_061230.1 · 66,486–66,686 bp · +
rps18 · NC_061230.1 · 66,853–67,158 bp · +
rps12 · NC_061230.1 · 137,304–138,097 bp · +
psbB · NC_061230.1 · 71,172–72,698 bp · +
psbT · NC_061230.1 · 72,874–72,981 bp · +
psbH · NC_061230.1 · 73,279–73,500 bp · +
petB · NC_061230.1 · 73,626–74,982 bp · +
petD · NC_061230.1 · 75,176–76,372 bp · +
ycf2 · NC_061230.1 · 84,851–91,684 bp · +
ycf15 · NC_061230.1 · 91,775–92,023 bp · +
trnV-GAC · NC_061230.1 · 98,320–98,391 bp · +
rrn16 · NC_061230.1 · 98,618–100,108 bp · +
trnI-GAU · NC_061230.1 · 100,407–101,419 bp · +
trnA-UGC · NC_061230.1 · 101,484–102,361 bp · +
rrn23 · NC_061230.1 · 102,527–105,338 bp · +
rrn4.5 · NC_061230.1 · 105,437–105,539 bp · +
rrn5 · NC_061230.1 · 105,816–105,936 bp · +
trnR-ACG · NC_061230.1 · 106,180–106,253 bp · +
rpl32 · NC_061230.1 · 110,870–111,040 bp · +
trnL-UAG · NC_061230.1 · 111,710–111,789 bp · +
ccsA · NC_061230.1 · 111,882–112,859 bp · +
trnN-GUU · NC_061230.1 · 127,170–127,241 bp · +
rps7 · NC_061230.1 · 138,151–138,618 bp · +
ndhB · NC_061230.1 · 138,937–141,090 bp · +
trnL-CAA · NC_061230.1 · 141,650–141,730 bp · +
trnI-CAU · NC_061230.1 · 149,252–149,325 bp · +
rpl23 · NC_061230.1 · 149,495–149,776 bp · +
rpl2 · NC_061230.1 · 149,795–151,277 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Salvia substolonifera
ANNOTATED PLASTOME
NC_061230.1
151,378 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37844 75689 113534 151378 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 12 85 74 Locate
psbA gene − 394 1452 1059 Locate
trnK-UUU gene − 1684 4286 2603 Locate
matK gene − 1992 3554 1563 Locate
rps16 gene − 4852 5964 1113 Locate
trnQ-UUG gene − 6974 7045 72 Locate
psbK gene + 7432 7611 180 Locate
psbI gene + 8005 8115 111 Locate
trnS-GCU gene − 8258 8345 88 Locate
trnG-UCC gene + 9029 9781 753 Locate
trnR-UCU gene + 9963 10034 72 Locate
atpA gene − 10141 11664 1524 Locate
atpF gene − 11768 13011 1244 Locate
atpH gene − 13281 13526 246 Locate
atpI gene − 14526 15269 744 Locate
rps2 gene − 15495 16205 711 Locate
rpoC2 gene − 16415 20593 4179 Locate
rpoC1 gene − 20745 23565 2821 Locate
rpoB gene − 23592 26804 3213 Locate
trnC-GCA gene + 27967 28037 71 Locate
petN gene + 28201 28290 90 Locate
psbM gene − 29266 29370 105 Locate
trnD-GUC gene − 29887 29960 74 Locate
trnY-GUA gene − 30071 30154 84 Locate
trnE-UUC gene − 30221 30293 73 Locate
trnT-GGU gene + 30832 30903 72 Locate
psbD gene + 32152 33213 1062 Locate
psbC gene + 33161 34582 1422 Locate
trnS-UGA gene − 34834 34926 93 Locate
psbZ gene + 35253 35441 189 Locate
trnG-GCC gene + 35719 35789 71 Locate
trnfM-CAU gene − 35953 36026 74 Locate
rps14 gene − 36176 36478 303 Locate
psaB gene − 36601 38805 2205 Locate
psaA gene − 38831 41083 2253 Locate
ycf3 gene − 41837 43763 1927 Locate
trnS-GGA gene + 44579 44665 87 Locate
rps4 gene − 44942 45547 606 Locate
trnT-UGU gene − 45918 45990 73 Locate
trnL-UAA gene + 46661 47201 541 Locate
trnF-GAA gene + 47521 47593 73 Locate
ndhJ gene − 48127 48603 477 Locate
ndhK gene − 48714 49391 678 Locate
ndhC gene − 49443 49805 363 Locate
trnV-UAC gene − 50756 51404 649 Locate
trnM-CAU gene + 51585 51657 73 Locate
atpE gene − 51853 52254 402 Locate
atpB gene − 52251 53747 1497 Locate
rbcL gene + 54521 55954 1434 Locate
accD gene + 56676 58193 1518 Locate
psaI gene + 58539 58649 111 Locate
ycf4 gene + 59096 59650 555 Locate
cemA gene + 60258 60947 690 Locate
petA gene + 61174 62136 963 Locate
psbJ gene − 63194 63316 123 Locate
psbL gene − 63446 63562 117 Locate
psbF gene − 63586 63705 120 Locate
psbE gene − 63720 63971 252 Locate
petL gene + 64777 64872 96 Locate
petG gene + 65051 65164 114 Locate
trnW-CCA gene − 65279 65352 74 Locate
trnP-UGG gene − 65531 65604 74 Locate
psaJ gene + 65896 66030 135 Locate
rpl33 gene + 66486 66686 201 Locate
rps18 gene + 66853 67158 306 Locate
rpl20 gene − 67390 67776 387 Locate
rps12 gene − 68595 68708 114 Locate
clpP gene − 68832 70730 1899 Locate
psbB gene + 71172 72698 1527 Locate
psbT gene + 72874 72981 108 Locate
psbN gene − 73042 73173 132 Locate
psbH gene + 73279 73500 222 Locate
petB gene + 73626 74982 1357 Locate
petD gene + 75176 76372 1197 Locate
rpoA gene − 76535 77542 1008 Locate
rps11 gene − 77615 78031 417 Locate
rpl36 gene − 78141 78254 114 Locate
infA gene − 78350 78583 234 Locate
rps8 gene − 78711 79115 405 Locate
rpl14 gene − 79300 79668 369 Locate
rpl16 gene − 79800 81074 1275 Locate
rps3 gene − 81210 81872 663 Locate
rpl22 gene − 81857 82324 468 Locate
rps19 gene − 82399 82677 279 Locate
rpl2 gene − 82737 84219 1483 Locate
rpl23 gene − 84238 84519 282 Locate
trnI-CAU gene − 84689 84762 74 Locate
ycf2 gene + 84851 91684 6834 Locate
ycf15 gene + 91775 92023 249 Locate
trnL-CAA gene − 92284 92364 81 Locate
ndhB gene − 92924 95077 2154 Locate
rps7 gene − 95396 95863 468 Locate
rps12 gene − 95917 96710 794 Locate
trnV-GAC gene + 98320 98391 72 Locate
rrn16 gene + 98618 100108 1491 Locate
trnI-GAU gene + 100407 101419 1013 Locate
trnA-UGC gene + 101484 102361 878 Locate
rrn23 gene + 102527 105338 2812 Locate
rrn4.5 gene + 105437 105539 103 Locate
rrn5 gene + 105816 105936 121 Locate
trnR-ACG gene + 106180 106253 74 Locate
trnN-GUU gene − 106773 106844 72 Locate
ndhF gene − 108198 110414 2217 Locate
rpl32 gene + 110870 111040 171 Locate
trnL-UAG gene + 111710 111789 80 Locate
ccsA gene + 111882 112859 978 Locate
ndhD gene − 113090 114631 1542 Locate
psaC gene − 114731 114976 246 Locate
ndhE gene − 115227 115532 306 Locate
ndhG gene − 115749 116279 531 Locate
ndhI gene − 116662 117168 507 Locate
ndhA gene − 117250 119343 2094 Locate
ndhH gene − 119345 120526 1182 Locate
rps15 gene − 120626 120898 273 Locate
ycf1 gene − 121306 126951 5646 Locate
trnN-GUU gene + 127170 127241 72 Locate
trnR-ACG gene − 127761 127834 74 Locate
rrn5 gene − 128078 128198 121 Locate
rrn4.5 gene − 128475 128577 103 Locate
rrn23 gene − 128676 131487 2812 Locate
trnA-UGC gene − 131653 132530 878 Locate
trnI-GAU gene − 132595 133607 1013 Locate
rrn16 gene − 133906 135396 1491 Locate
trnV-GAC gene − 135623 135694 72 Locate
rps12 gene + 137304 138097 794 Locate
rps7 gene + 138151 138618 468 Locate
ndhB gene + 138937 141090 2154 Locate
trnL-CAA gene + 141650 141730 81 Locate
ycf15 gene − 141991 142239 249 Locate
ycf2 gene − 142330 149163 6834 Locate
trnI-CAU gene + 149252 149325 74 Locate
rpl23 gene + 149495 149776 282 Locate
rpl2 gene + 149795 151277 1483 Locate
Status Available
Accession NC_061230.1
Length 151,378 bp
GC content 38.0%
Annotated genes 132
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 14 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources