Salvia trijuga chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · NC_061229.1 · 12–85 bp · −
psbA · NC_061229.1 · 395–1,453 bp · −
trnK-UUU · NC_061229.1 · 1,685–4,278 bp · −
matK · NC_061229.1 · 1,984–3,546 bp · −
rps16 · NC_061229.1 · 4,843–5,961 bp · −
trnQ-UUG · NC_061229.1 · 6,951–7,022 bp · −
trnS-GCU · NC_061229.1 · 8,240–8,327 bp · −
atpA · NC_061229.1 · 10,123–11,646 bp · −
atpF · NC_061229.1 · 11,750–12,995 bp · −
atpH · NC_061229.1 · 13,261–13,506 bp · −
atpI · NC_061229.1 · 14,510–15,253 bp · −
rps2 · NC_061229.1 · 15,480–16,190 bp · −
rpoC2 · NC_061229.1 · 16,400–20,578 bp · −
rpoC1 · NC_061229.1 · 20,736–23,556 bp · −
rpoB · NC_061229.1 · 23,583–26,795 bp · −
psbM · NC_061229.1 · 29,256–29,360 bp · −
trnD-GUC · NC_061229.1 · 29,879–29,952 bp · −
trnY-GUA · NC_061229.1 · 30,063–30,146 bp · −
trnE-UUC · NC_061229.1 · 30,218–30,290 bp · −
trnS-UGA · NC_061229.1 · 34,829–34,921 bp · −
trnfM-CAU · NC_061229.1 · 35,981–36,054 bp · −
rps14 · NC_061229.1 · 36,199–36,501 bp · −
psaB · NC_061229.1 · 36,624–38,828 bp · −
psaA · NC_061229.1 · 38,854–41,106 bp · −
ycf3 · NC_061229.1 · 41,866–43,791 bp · −
rps4 · NC_061229.1 · 44,986–45,591 bp · −
trnT-UGU · NC_061229.1 · 45,987–46,059 bp · −
ndhJ · NC_061229.1 · 48,138–48,614 bp · −
ndhK · NC_061229.1 · 48,725–49,402 bp · −
ndhC · NC_061229.1 · 49,454–49,816 bp · −
trnV-UAC · NC_061229.1 · 50,760–51,408 bp · −
atpE · NC_061229.1 · 51,872–52,273 bp · −
atpB · NC_061229.1 · 52,270–53,766 bp · −
psbJ · NC_061229.1 · 63,200–63,322 bp · −
psbL · NC_061229.1 · 63,452–63,568 bp · −
psbF · NC_061229.1 · 63,592–63,711 bp · −
psbE · NC_061229.1 · 63,726–63,977 bp · −
trnW-CCA · NC_061229.1 · 65,260–65,333 bp · −
trnP-UGG · NC_061229.1 · 65,512–65,585 bp · −
rpl20 · NC_061229.1 · 67,372–67,758 bp · −
rps12 · NC_061229.1 · 68,568–68,681 bp · −
rps12 · NC_061229.1 · 95,914–96,697 bp · −
clpP · NC_061229.1 · 68,805–70,704 bp · −
psbN · NC_061229.1 · 73,013–73,144 bp · −
rpoA · NC_061229.1 · 76,514–77,521 bp · −
rps11 · NC_061229.1 · 77,592–78,008 bp · −
rpl36 · NC_061229.1 · 78,118–78,231 bp · −
infA · NC_061229.1 · 78,327–78,560 bp · −
rps8 · NC_061229.1 · 78,688–79,092 bp · −
rpl14 · NC_061229.1 · 79,282–79,650 bp · −
rpl16 · NC_061229.1 · 79,782–81,056 bp · −
rps3 · NC_061229.1 · 81,192–81,854 bp · −
rpl22 · NC_061229.1 · 81,839–82,306 bp · −
rps19 · NC_061229.1 · 82,381–82,659 bp · −
rpl2 · NC_061229.1 · 82,719–84,201 bp · −
rpl23 · NC_061229.1 · 84,220–84,501 bp · −
trnI-CAU · NC_061229.1 · 84,667–84,740 bp · −
trnL-CAA · NC_061229.1 · 92,271–92,351 bp · −
ndhB · NC_061229.1 · 92,911–95,064 bp · −
rps7 · NC_061229.1 · 95,393–95,860 bp · −
trnN-GUU · NC_061229.1 · 106,753–106,824 bp · −
ndhF · NC_061229.1 · 108,178–110,394 bp · −
ndhD · NC_061229.1 · 113,103–114,644 bp · −
psaC · NC_061229.1 · 114,738–114,983 bp · −
ndhE · NC_061229.1 · 115,234–115,539 bp · −
ndhG · NC_061229.1 · 115,756–116,286 bp · −
ndhI · NC_061229.1 · 116,671–117,177 bp · −
ndhA · NC_061229.1 · 117,258–119,358 bp · −
ndhH · NC_061229.1 · 119,360–120,541 bp · −
rps15 · NC_061229.1 · 120,641–120,913 bp · −
ycf1 · NC_061229.1 · 121,322–126,967 bp · −
trnR-ACG · NC_061229.1 · 127,777–127,850 bp · −
rrn5 · NC_061229.1 · 128,094–128,214 bp · −
rrn4.5 · NC_061229.1 · 128,470–128,572 bp · −
rrn23 · NC_061229.1 · 128,671–131,481 bp · −
trnA-UGC · NC_061229.1 · 131,657–132,533 bp · −
trnI-GAU · NC_061229.1 · 132,598–133,610 bp · −
rrn16 · NC_061229.1 · 133,909–135,399 bp · −
trnV-GAC · NC_061229.1 · 135,626–135,697 bp · −
ycf15 · NC_061229.1 · 142,000–142,248 bp · −
ycf2 · NC_061229.1 · 142,339–149,181 bp · −
psbK · NC_061229.1 · 7,409–7,588 bp · +
psbI · NC_061229.1 · 7,981–8,091 bp · +
trnG-UCC · NC_061229.1 · 9,010–9,764 bp · +
trnR-UCU · NC_061229.1 · 9,946–10,017 bp · +
trnC-GCA · NC_061229.1 · 27,965–28,035 bp · +
petN · NC_061229.1 · 28,191–28,280 bp · +
trnT-GGU · NC_061229.1 · 30,829–30,900 bp · +
psbD · NC_061229.1 · 32,153–33,214 bp · +
psbC · NC_061229.1 · 33,162–34,583 bp · +
psbZ · NC_061229.1 · 35,256–35,444 bp · +
trnG-GCC · NC_061229.1 · 35,733–35,803 bp · +
trnS-GGA · NC_061229.1 · 44,623–44,709 bp · +
trnL-UAA · NC_061229.1 · 46,698–47,239 bp · +
trnF-GAA · NC_061229.1 · 47,538–47,610 bp · +
trnM-CAU · NC_061229.1 · 51,589–51,661 bp · +
rbcL · NC_061229.1 · 54,551–55,984 bp · +
accD · NC_061229.1 · 56,692–58,197 bp · +
psaI · NC_061229.1 · 58,544–58,654 bp · +
ycf4 · NC_061229.1 · 59,100–59,654 bp · +
cemA · NC_061229.1 · 60,266–60,955 bp · +
petA · NC_061229.1 · 61,176–62,138 bp · +
petL · NC_061229.1 · 64,758–64,853 bp · +
petG · NC_061229.1 · 65,032–65,145 bp · +
psaJ · NC_061229.1 · 65,879–66,013 bp · +
rpl33 · NC_061229.1 · 66,469–66,669 bp · +
rps18 · NC_061229.1 · 66,835–67,140 bp · +
rps12 · NC_061229.1 · 137,313–138,096 bp · +
psbB · NC_061229.1 · 71,146–72,672 bp · +
psbT · NC_061229.1 · 72,845–72,952 bp · +
psbH · NC_061229.1 · 73,250–73,471 bp · +
petB · NC_061229.1 · 73,597–74,947 bp · +
petD · NC_061229.1 · 75,141–76,337 bp · +
ycf2 · NC_061229.1 · 84,829–91,671 bp · +
ycf15 · NC_061229.1 · 91,762–92,010 bp · +
trnV-GAC · NC_061229.1 · 98,313–98,384 bp · +
rrn16 · NC_061229.1 · 98,611–100,101 bp · +
trnI-GAU · NC_061229.1 · 100,400–101,412 bp · +
trnA-UGC · NC_061229.1 · 101,477–102,353 bp · +
rrn23 · NC_061229.1 · 102,529–105,339 bp · +
rrn4.5 · NC_061229.1 · 105,438–105,540 bp · +
rrn5 · NC_061229.1 · 105,796–105,916 bp · +
trnR-ACG · NC_061229.1 · 106,160–106,233 bp · +
rpl32 · NC_061229.1 · 110,841–111,020 bp · +
trnL-UAG · NC_061229.1 · 111,719–111,798 bp · +
ccsA · NC_061229.1 · 111,891–112,868 bp · +
trnN-GUU · NC_061229.1 · 127,186–127,257 bp · +
rps7 · NC_061229.1 · 138,150–138,617 bp · +
ndhB · NC_061229.1 · 138,946–141,099 bp · +
trnL-CAA · NC_061229.1 · 141,659–141,739 bp · +
trnI-CAU · NC_061229.1 · 149,270–149,343 bp · +
rpl23 · NC_061229.1 · 149,509–149,790 bp · +
rpl2 · NC_061229.1 · 149,809–151,291 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Salvia trijuga
ANNOTATED PLASTOME
NC_061229.1
151,392 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37848 75696 113544 151392 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 12 85 74 Locate
psbA gene − 395 1453 1059 Locate
trnK-UUU gene − 1685 4278 2594 Locate
matK gene − 1984 3546 1563 Locate
rps16 gene − 4843 5961 1119 Locate
trnQ-UUG gene − 6951 7022 72 Locate
psbK gene + 7409 7588 180 Locate
psbI gene + 7981 8091 111 Locate
trnS-GCU gene − 8240 8327 88 Locate
trnG-UCC gene + 9010 9764 755 Locate
trnR-UCU gene + 9946 10017 72 Locate
atpA gene − 10123 11646 1524 Locate
atpF gene − 11750 12995 1246 Locate
atpH gene − 13261 13506 246 Locate
atpI gene − 14510 15253 744 Locate
rps2 gene − 15480 16190 711 Locate
rpoC2 gene − 16400 20578 4179 Locate
rpoC1 gene − 20736 23556 2821 Locate
rpoB gene − 23583 26795 3213 Locate
trnC-GCA gene + 27965 28035 71 Locate
petN gene + 28191 28280 90 Locate
psbM gene − 29256 29360 105 Locate
trnD-GUC gene − 29879 29952 74 Locate
trnY-GUA gene − 30063 30146 84 Locate
trnE-UUC gene − 30218 30290 73 Locate
trnT-GGU gene + 30829 30900 72 Locate
psbD gene + 32153 33214 1062 Locate
psbC gene + 33162 34583 1422 Locate
trnS-UGA gene − 34829 34921 93 Locate
psbZ gene + 35256 35444 189 Locate
trnG-GCC gene + 35733 35803 71 Locate
trnfM-CAU gene − 35981 36054 74 Locate
rps14 gene − 36199 36501 303 Locate
psaB gene − 36624 38828 2205 Locate
psaA gene − 38854 41106 2253 Locate
ycf3 gene − 41866 43791 1926 Locate
trnS-GGA gene + 44623 44709 87 Locate
rps4 gene − 44986 45591 606 Locate
trnT-UGU gene − 45987 46059 73 Locate
trnL-UAA gene + 46698 47239 542 Locate
trnF-GAA gene + 47538 47610 73 Locate
ndhJ gene − 48138 48614 477 Locate
ndhK gene − 48725 49402 678 Locate
ndhC gene − 49454 49816 363 Locate
trnV-UAC gene − 50760 51408 649 Locate
trnM-CAU gene + 51589 51661 73 Locate
atpE gene − 51872 52273 402 Locate
atpB gene − 52270 53766 1497 Locate
rbcL gene + 54551 55984 1434 Locate
accD gene + 56692 58197 1506 Locate
psaI gene + 58544 58654 111 Locate
ycf4 gene + 59100 59654 555 Locate
cemA gene + 60266 60955 690 Locate
petA gene + 61176 62138 963 Locate
psbJ gene − 63200 63322 123 Locate
psbL gene − 63452 63568 117 Locate
psbF gene − 63592 63711 120 Locate
psbE gene − 63726 63977 252 Locate
petL gene + 64758 64853 96 Locate
petG gene + 65032 65145 114 Locate
trnW-CCA gene − 65260 65333 74 Locate
trnP-UGG gene − 65512 65585 74 Locate
psaJ gene + 65879 66013 135 Locate
rpl33 gene + 66469 66669 201 Locate
rps18 gene + 66835 67140 306 Locate
rpl20 gene − 67372 67758 387 Locate
rps12 gene − 68568 68681 114 Locate
clpP gene − 68805 70704 1900 Locate
psbB gene + 71146 72672 1527 Locate
psbT gene + 72845 72952 108 Locate
psbN gene − 73013 73144 132 Locate
psbH gene + 73250 73471 222 Locate
petB gene + 73597 74947 1351 Locate
petD gene + 75141 76337 1197 Locate
rpoA gene − 76514 77521 1008 Locate
rps11 gene − 77592 78008 417 Locate
rpl36 gene − 78118 78231 114 Locate
infA gene − 78327 78560 234 Locate
rps8 gene − 78688 79092 405 Locate
rpl14 gene − 79282 79650 369 Locate
rpl16 gene − 79782 81056 1275 Locate
rps3 gene − 81192 81854 663 Locate
rpl22 gene − 81839 82306 468 Locate
rps19 gene − 82381 82659 279 Locate
rpl2 gene − 82719 84201 1483 Locate
rpl23 gene − 84220 84501 282 Locate
trnI-CAU gene − 84667 84740 74 Locate
ycf2 gene + 84829 91671 6843 Locate
ycf15 gene + 91762 92010 249 Locate
trnL-CAA gene − 92271 92351 81 Locate
ndhB gene − 92911 95064 2154 Locate
rps7 gene − 95393 95860 468 Locate
rps12 gene − 95914 96697 784 Locate
trnV-GAC gene + 98313 98384 72 Locate
rrn16 gene + 98611 100101 1491 Locate
trnI-GAU gene + 100400 101412 1013 Locate
trnA-UGC gene + 101477 102353 877 Locate
rrn23 gene + 102529 105339 2811 Locate
rrn4.5 gene + 105438 105540 103 Locate
rrn5 gene + 105796 105916 121 Locate
trnR-ACG gene + 106160 106233 74 Locate
trnN-GUU gene − 106753 106824 72 Locate
ndhF gene − 108178 110394 2217 Locate
rpl32 gene + 110841 111020 180 Locate
trnL-UAG gene + 111719 111798 80 Locate
ccsA gene + 111891 112868 978 Locate
ndhD gene − 113103 114644 1542 Locate
psaC gene − 114738 114983 246 Locate
ndhE gene − 115234 115539 306 Locate
ndhG gene − 115756 116286 531 Locate
ndhI gene − 116671 117177 507 Locate
ndhA gene − 117258 119358 2101 Locate
ndhH gene − 119360 120541 1182 Locate
rps15 gene − 120641 120913 273 Locate
ycf1 gene − 121322 126967 5646 Locate
trnN-GUU gene + 127186 127257 72 Locate
trnR-ACG gene − 127777 127850 74 Locate
rrn5 gene − 128094 128214 121 Locate
rrn4.5 gene − 128470 128572 103 Locate
rrn23 gene − 128671 131481 2811 Locate
trnA-UGC gene − 131657 132533 877 Locate
trnI-GAU gene − 132598 133610 1013 Locate
rrn16 gene − 133909 135399 1491 Locate
trnV-GAC gene − 135626 135697 72 Locate
rps12 gene + 137313 138096 784 Locate
rps7 gene + 138150 138617 468 Locate
ndhB gene + 138946 141099 2154 Locate
trnL-CAA gene + 141659 141739 81 Locate
ycf15 gene − 142000 142248 249 Locate
ycf2 gene − 142339 149181 6843 Locate
trnI-CAU gene + 149270 149343 74 Locate
rpl23 gene + 149509 149790 282 Locate
rpl2 gene + 149809 151291 1483 Locate
Status Available
Accession NC_061229.1
Length 151,392 bp
GC content 37.9%
Annotated genes 132
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 14 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources