Salvia verticillata subsp. verticillata chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PP272177.1 · 9–82 bp · −
psbA · PP272177.1 · 381–1,439 bp · −
trnK-UUU · PP272177.1 · 1,667–4,254 bp · −
matK · PP272177.1 · 1,986–3,515 bp · −
rps16 · PP272177.1 · 4,808–5,907 bp · −
trnQ-UUG · PP272177.1 · 6,472–6,543 bp · −
trnS-GCU · PP272177.1 · 7,766–7,853 bp · −
atpA · PP272177.1 · 9,676–11,199 bp · −
atpF · PP272177.1 · 11,302–12,562 bp · −
atpH · PP272177.1 · 12,838–13,083 bp · −
atpI · PP272177.1 · 14,133–14,876 bp · −
rps2 · PP272177.1 · 15,109–15,819 bp · −
rpoC2 · PP272177.1 · 16,036–20,223 bp · −
rpoC1 · PP272177.1 · 20,388–23,210 bp · −
rpoB · PP272177.1 · 23,237–26,449 bp · −
psbM · PP272177.1 · 28,888–28,992 bp · −
trnD-GUC · PP272177.1 · 29,502–29,575 bp · −
trnY-GUA · PP272177.1 · 29,685–29,768 bp · −
trnE-UUC · PP272177.1 · 29,838–29,910 bp · −
trnS-UGA · PP272177.1 · 34,578–34,670 bp · −
trnfM-CAU · PP272177.1 · 35,718–35,791 bp · −
rps14 · PP272177.1 · 35,936–36,238 bp · −
psaB · PP272177.1 · 36,361–38,565 bp · −
psaA · PP272177.1 · 38,591–40,843 bp · −
ycf3 · PP272177.1 · 41,630–43,580 bp · −
rps4 · PP272177.1 · 44,755–45,360 bp · −
trnT-UGU · PP272177.1 · 45,709–45,781 bp · −
ndhJ · PP272177.1 · 48,051–48,527 bp · −
ndhK · PP272177.1 · 48,638–49,315 bp · −
ndhC · PP272177.1 · 49,367–49,729 bp · −
trnV-UAC · PP272177.1 · 50,686–51,337 bp · −
atpE · PP272177.1 · 51,801–52,202 bp · −
atpB · PP272177.1 · 52,199–53,695 bp · −
psbJ · PP272177.1 · 63,210–63,332 bp · −
psbL · PP272177.1 · 63,462–63,578 bp · −
psbF · PP272177.1 · 63,602–63,721 bp · −
psbE · PP272177.1 · 63,736–63,987 bp · −
trnW-CCA · PP272177.1 · 65,404–65,477 bp · −
trnP-UGG · PP272177.1 · 65,651–65,724 bp · −
rpl20 · PP272177.1 · 67,495–67,881 bp · −
rps12 · PP272177.1 · 68,683–68,796 bp · −
rps12 · PP272177.1 · 96,035–96,828 bp · −
clpP · PP272177.1 · 68,916–70,811 bp · −
psbN · PP272177.1 · 73,139–73,270 bp · −
rpoA · PP272177.1 · 76,663–77,670 bp · −
rps11 · PP272177.1 · 77,741–78,157 bp · −
rpl36 · PP272177.1 · 78,267–78,380 bp · −
infA · PP272177.1 · 78,476–78,709 bp · −
rps8 · PP272177.1 · 78,830–79,234 bp · −
rpl14 · PP272177.1 · 79,414–79,782 bp · −
rpl16 · PP272177.1 · 79,911–81,180 bp · −
rps3 · PP272177.1 · 81,334–81,996 bp · −
rpl22 · PP272177.1 · 81,981–82,448 bp · −
rps19 · PP272177.1 · 82,518–82,796 bp · −
rpl2 · PP272177.1 · 82,856–84,343 bp · −
rpl23 · PP272177.1 · 84,362–84,643 bp · −
trnI-CAU · PP272177.1 · 84,809–84,882 bp · −
trnL-CAA · PP272177.1 · 92,400–92,480 bp · −
ndhB · PP272177.1 · 93,032–95,185 bp · −
rps7 · PP272177.1 · 95,514–95,981 bp · −
trnN-GUU · PP272177.1 · 106,870–106,941 bp · −
ndhF · PP272177.1 · 108,295–110,532 bp · −
ndhD · PP272177.1 · 113,200–114,741 bp · −
psaC · PP272177.1 · 114,837–115,082 bp · −
ndhE · PP272177.1 · 115,333–115,635 bp · −
ndhG · PP272177.1 · 115,862–116,392 bp · −
ndhI · PP272177.1 · 116,771–117,277 bp · −
ndhA · PP272177.1 · 117,358–119,460 bp · −
ndhH · PP272177.1 · 119,462–120,643 bp · −
rps15 · PP272177.1 · 120,743–121,015 bp · −
ycf1 · PP272177.1 · 121,416–126,959 bp · −
trnR-ACG · PP272177.1 · 127,768–127,841 bp · −
rrn5 · PP272177.1 · 128,091–128,211 bp · −
rrn4.5 · PP272177.1 · 128,461–128,563 bp · −
rrn23 · PP272177.1 · 128,664–131,472 bp · −
trnA-UGC · PP272177.1 · 131,633–132,510 bp · −
trnI-GAU · PP272177.1 · 132,583–133,603 bp · −
rrn16 · PP272177.1 · 133,902–135,392 bp · −
trnV-GAC · PP272177.1 · 135,619–135,690 bp · −
ycf15 · PP272177.1 · 142,030–142,167 bp · −
ycf2 · PP272177.1 · 142,309–149,148 bp · −
psbK · PP272177.1 · 6,929–7,108 bp · +
psbI · PP272177.1 · 7,500–7,610 bp · +
trnG-UCC · PP272177.1 · 8,565–9,318 bp · +
trnR-UCU · PP272177.1 · 9,499–9,570 bp · +
trnC-GCA · PP272177.1 · 27,604–27,674 bp · +
petN · PP272177.1 · 27,838–27,927 bp · +
trnT-GGU · PP272177.1 · 30,478–30,547 bp · +
psbD · PP272177.1 · 31,903–32,964 bp · +
psbC · PP272177.1 · 32,912–34,333 bp · +
psbZ · PP272177.1 · 35,010–35,198 bp · +
trnG-GCC · PP272177.1 · 35,474–35,544 bp · +
trnS-GGA · PP272177.1 · 44,405–44,491 bp · +
trnL-UAA · PP272177.1 · 46,474–47,049 bp · +
trnF-GAA · PP272177.1 · 47,337–47,409 bp · +
trnM-CAU · PP272177.1 · 51,518–51,590 bp · +
rbcL · PP272177.1 · 54,473–55,927 bp · +
accD · PP272177.1 · 56,623–58,104 bp · +
psaI · PP272177.1 · 58,574–58,684 bp · +
ycf4 · PP272177.1 · 59,134–59,688 bp · +
cemA · PP272177.1 · 60,351–61,040 bp · +
petA · PP272177.1 · 61,253–62,215 bp · +
petL · PP272177.1 · 64,899–64,994 bp · +
petG · PP272177.1 · 65,176–65,289 bp · +
psaJ · PP272177.1 · 65,999–66,133 bp · +
rpl33 · PP272177.1 · 66,578–66,778 bp · +
rps18 · PP272177.1 · 66,954–67,259 bp · +
rps12 · PP272177.1 · 137,291–138,084 bp · +
psbB · PP272177.1 · 71,265–72,791 bp · +
psbT · PP272177.1 · 72,971–73,078 bp · +
psbH · PP272177.1 · 73,376–73,597 bp · +
petB · PP272177.1 · 73,723–75,098 bp · +
petD · PP272177.1 · 75,300–76,486 bp · +
ycf2 · PP272177.1 · 84,971–91,810 bp · +
ycf15 · PP272177.1 · 92,000–92,089 bp · +
trnV-GAC · PP272177.1 · 98,429–98,500 bp · +
rrn16 · PP272177.1 · 98,727–100,217 bp · +
trnI-GAU · PP272177.1 · 100,516–101,536 bp · +
trnA-UGC · PP272177.1 · 101,609–102,486 bp · +
rrn23 · PP272177.1 · 102,647–105,455 bp · +
rrn4.5 · PP272177.1 · 105,556–105,658 bp · +
rrn5 · PP272177.1 · 105,908–106,028 bp · +
trnR-ACG · PP272177.1 · 106,278–106,351 bp · +
ycf1 · PP272177.1 · 107,160–108,428 bp · +
rpl32 · PP272177.1 · 110,962–111,159 bp · +
trnL-UAG · PP272177.1 · 111,884–111,963 bp · +
ccsA · PP272177.1 · 112,061–113,032 bp · +
trnN-GUU · PP272177.1 · 127,178–127,249 bp · +
rps7 · PP272177.1 · 138,138–138,605 bp · +
ndhB · PP272177.1 · 138,934–141,087 bp · +
trnL-CAA · PP272177.1 · 141,639–141,719 bp · +
trnI-CAU · PP272177.1 · 149,237–149,310 bp · +
rpl23 · PP272177.1 · 149,476–149,757 bp · +
rpl2 · PP272177.1 · 149,776–151,263 bp · +
rps19 · PP272177.1 · 151,323–151,364 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Salvia verticillata subsp. verticillata
ANNOTATED PLASTOME
PP272177.1
151,367 bp · 134 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37842 75684 113525 151367 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2 rps19
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
135 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 9 82 74 Locate
psbA gene − 381 1439 1059 Locate
trnK-UUU gene − 1667 4254 2588 Locate
matK gene − 1986 3515 1530 Locate
rps16 gene − 4808 5907 1100 Locate
trnQ-UUG gene − 6472 6543 72 Locate
psbK gene + 6929 7108 180 Locate
psbI gene + 7500 7610 111 Locate
trnS-GCU gene − 7766 7853 88 Locate
trnG-UCC gene + 8565 9318 754 Locate
trnR-UCU gene + 9499 9570 72 Locate
atpA gene − 9676 11199 1524 Locate
atpF gene − 11302 12562 1261 Locate
atpH gene − 12838 13083 246 Locate
atpI gene − 14133 14876 744 Locate
rps2 gene − 15109 15819 711 Locate
rpoC2 gene − 16036 20223 4188 Locate
rpoC1 gene − 20388 23210 2823 Locate
rpoB gene − 23237 26449 3213 Locate
trnC-GCA gene + 27604 27674 71 Locate
petN gene + 27838 27927 90 Locate
psbM gene − 28888 28992 105 Locate
trnD-GUC gene − 29502 29575 74 Locate
trnY-GUA gene − 29685 29768 84 Locate
trnE-UUC gene − 29838 29910 73 Locate
trnT-GGU gene + 30478 30547 70 Locate
psbD gene + 31903 32964 1062 Locate
psbC gene + 32912 34333 1422 Locate
trnS-UGA gene − 34578 34670 93 Locate
psbZ gene + 35010 35198 189 Locate
trnG-GCC gene + 35474 35544 71 Locate
trnfM-CAU gene − 35718 35791 74 Locate
rps14 gene − 35936 36238 303 Locate
psaB gene − 36361 38565 2205 Locate
psaA gene − 38591 40843 2253 Locate
ycf3 gene − 41630 43580 1951 Locate
trnS-GGA gene + 44405 44491 87 Locate
rps4 gene − 44755 45360 606 Locate
trnT-UGU gene − 45709 45781 73 Locate
trnL-UAA gene + 46474 47049 576 Locate
trnF-GAA gene + 47337 47409 73 Locate
ndhJ gene − 48051 48527 477 Locate
ndhK gene − 48638 49315 678 Locate
ndhC gene − 49367 49729 363 Locate
trnV-UAC gene − 50686 51337 652 Locate
trnM-CAU gene + 51518 51590 73 Locate
atpE gene − 51801 52202 402 Locate
atpB gene − 52199 53695 1497 Locate
rbcL gene + 54473 55927 1455 Locate
accD gene + 56623 58104 1482 Locate
psaI gene + 58574 58684 111 Locate
ycf4 gene + 59134 59688 555 Locate
cemA gene + 60351 61040 690 Locate
petA gene + 61253 62215 963 Locate
psbJ gene − 63210 63332 123 Locate
psbL gene − 63462 63578 117 Locate
psbF gene − 63602 63721 120 Locate
psbE gene − 63736 63987 252 Locate
petL gene + 64899 64994 96 Locate
petG gene + 65176 65289 114 Locate
trnW-CCA gene − 65404 65477 74 Locate
trnP-UGG gene − 65651 65724 74 Locate
psaJ gene + 65999 66133 135 Locate
rpl33 gene + 66578 66778 201 Locate
rps18 gene + 66954 67259 306 Locate
rpl20 gene − 67495 67881 387 Locate
rps12 gene − 68683 68796 114 Locate
clpP gene − 68916 70811 1896 Locate
psbB gene + 71265 72791 1527 Locate
psbT gene + 72971 73078 108 Locate
psbN gene − 73139 73270 132 Locate
psbH gene + 73376 73597 222 Locate
petB gene + 73723 75098 1376 Locate
petD gene + 75300 76486 1187 Locate
rpoA gene − 76663 77670 1008 Locate
rps11 gene − 77741 78157 417 Locate
rpl36 gene − 78267 78380 114 Locate
infA gene − 78476 78709 234 Locate
rps8 gene − 78830 79234 405 Locate
rpl14 gene − 79414 79782 369 Locate
rpl16 gene − 79911 81180 1270 Locate
rps3 gene − 81334 81996 663 Locate
rpl22 gene − 81981 82448 468 Locate
rps19 gene − 82518 82796 279 Locate
rpl2 gene − 82856 84343 1488 Locate
rpl23 gene − 84362 84643 282 Locate
trnI-CAU gene − 84809 84882 74 Locate
ycf2 gene + 84971 91810 6840 Locate
ycf15 gene + 92000 92089 90 Locate
trnL-CAA gene − 92400 92480 81 Locate
ndhB gene − 93032 95185 2154 Locate
rps7 gene − 95514 95981 468 Locate
rps12 gene − 96035 96828 794 Locate
trnV-GAC gene + 98429 98500 72 Locate
rrn16 gene + 98727 100217 1491 Locate
trnI-GAU gene + 100516 101536 1021 Locate
trnA-UGC gene + 101609 102486 878 Locate
rrn23 gene + 102647 105455 2809 Locate
rrn4.5 gene + 105556 105658 103 Locate
rrn5 gene + 105908 106028 121 Locate
trnR-ACG gene + 106278 106351 74 Locate
trnN-GUU gene − 106870 106941 72 Locate
ycf1 gene + 107160 108428 1269 Locate
ndhF gene − 108295 110532 2238 Locate
rpl32 gene + 110962 111159 198 Locate
trnL-UAG gene + 111884 111963 80 Locate
ccsA gene + 112061 113032 972 Locate
ndhD gene − 113200 114741 1542 Locate
psaC gene − 114837 115082 246 Locate
ndhE gene − 115333 115635 303 Locate
ndhG gene − 115862 116392 531 Locate
ndhI gene − 116771 117277 507 Locate
ndhA gene − 117358 119460 2103 Locate
ndhH gene − 119462 120643 1182 Locate
rps15 gene − 120743 121015 273 Locate
ycf1 gene − 121416 126959 5544 Locate
trnN-GUU gene + 127178 127249 72 Locate
trnR-ACG gene − 127768 127841 74 Locate
rrn5 gene − 128091 128211 121 Locate
rrn4.5 gene − 128461 128563 103 Locate
rrn23 gene − 128664 131472 2809 Locate
trnA-UGC gene − 131633 132510 878 Locate
trnI-GAU gene − 132583 133603 1021 Locate
rrn16 gene − 133902 135392 1491 Locate
trnV-GAC gene − 135619 135690 72 Locate
rps12 gene + 137291 138084 794 Locate
rps7 gene + 138138 138605 468 Locate
ndhB gene + 138934 141087 2154 Locate
trnL-CAA gene + 141639 141719 81 Locate
ycf15 gene − 142030 142167 138 Locate
ycf2 gene − 142309 149148 6840 Locate
trnI-CAU gene + 149237 149310 74 Locate
rpl23 gene + 149476 149757 282 Locate
rpl2 gene + 149776 151263 1488 Locate
rps19 gene + 151323 151364 42 Locate
Status Available
Accession PP272177.1
Length 151,367 bp
GC content 38.0%
Annotated genes 134
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 27 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources