Salvia yangii chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
LSC
IR
SSC
IR
trnH-GUG · NC_050902.1 · 4–77 bp · −
psbA · NC_050902.1 · 401–1,459 bp · −
trnK-UUU · NC_050902.1 · 1,691–4,277 bp · −
matK · NC_050902.1 · 2,011–3,540 bp · −
rps16 · NC_050902.1 · 4,848–5,940 bp · −
trnQ-UUG · NC_050902.1 · 6,484–6,555 bp · −
trnS-GCU · NC_050902.1 · 7,770–7,857 bp · −
atpA · NC_050902.1 · 9,665–11,188 bp · −
atpF · NC_050902.1 · 11,285–12,537 bp · −
atpH · NC_050902.1 · 12,824–13,069 bp · −
atpI · NC_050902.1 · 14,086–14,829 bp · −
rps2 · NC_050902.1 · 15,054–15,764 bp · −
rpoC2 · NC_050902.1 · 15,976–20,163 bp · −
rpoC1 · NC_050902.1 · 20,323–23,155 bp · −
rpoB · NC_050902.1 · 23,161–26,373 bp · −
psbM · NC_050902.1 · 28,870–28,974 bp · −
trnD-GUC · NC_050902.1 · 29,493–29,566 bp · −
trnY-GUA · NC_050902.1 · 29,677–29,760 bp · −
trnE-UUC · NC_050902.1 · 29,832–29,904 bp · −
trnS-UGA · NC_050902.1 · 34,548–34,640 bp · −
trnfM-CAU · NC_050902.1 · 35,669–35,742 bp · −
rps14 · NC_050902.1 · 35,887–36,189 bp · −
psaB · NC_050902.1 · 36,312–38,516 bp · −
psaA · NC_050902.1 · 38,542–40,794 bp · −
ycf3 · NC_050902.1 · 41,598–43,547 bp · −
rps4 · NC_050902.1 · 44,720–45,325 bp · −
trnT-UGU · NC_050902.1 · 45,674–45,746 bp · −
ndhJ · NC_050902.1 · 48,023–48,499 bp · −
ndhK · NC_050902.1 · 48,610–49,287 bp · −
ndhC · NC_050902.1 · 49,339–49,701 bp · −
trnV-UAC · NC_050902.1 · 50,660–51,303 bp · −
atpE · NC_050902.1 · 51,767–52,168 bp · −
atpB · NC_050902.1 · 52,165–53,661 bp · −
psbJ · NC_050902.1 · 63,145–63,267 bp · −
psbL · NC_050902.1 · 63,397–63,513 bp · −
psbF · NC_050902.1 · 63,537–63,656 bp · −
psbE · NC_050902.1 · 63,671–63,922 bp · −
trnW-CCA · NC_050902.1 · 65,324–65,397 bp · −
trnP-UGG · NC_050902.1 · 65,572–65,645 bp · −
rpl20 · NC_050902.1 · 67,418–67,804 bp · −
rps12 · NC_050902.1 · 68,602–68,715 bp · −
rps12 · NC_050902.1 · 95,991–96,784 bp · −
clpP · NC_050902.1 · 68,839–70,758 bp · −
psbN · NC_050902.1 · 73,088–73,219 bp · −
rpoA · NC_050902.1 · 76,589–77,596 bp · −
rps11 · NC_050902.1 · 77,667–78,083 bp · −
rpl36 · NC_050902.1 · 78,193–78,306 bp · −
infA · NC_050902.1 · 78,402–78,635 bp · −
rps8 · NC_050902.1 · 78,756–79,160 bp · −
rpl14 · NC_050902.1 · 79,343–79,711 bp · −
rpl16 · NC_050902.1 · 79,844–81,116 bp · −
rps3 · NC_050902.1 · 81,275–81,937 bp · −
rpl22 · NC_050902.1 · 81,922–82,389 bp · −
rps19 · NC_050902.1 · 82,459–82,737 bp · −
rpl2 · NC_050902.1 · 82,807–84,294 bp · −
rpl23 · NC_050902.1 · 84,313–84,594 bp · −
trnI-CAU · NC_050902.1 · 84,760–84,833 bp · −
trnL-CAA · NC_050902.1 · 92,356–92,436 bp · −
ndhB · NC_050902.1 · 92,988–95,195 bp · −
rps7 · NC_050902.1 · 95,470–95,937 bp · −
trnN-GUU · NC_050902.1 · 106,841–106,912 bp · −
ndhF · NC_050902.1 · 108,266–110,497 bp · −
ndhD · NC_050902.1 · 113,249–114,790 bp · −
psaC · NC_050902.1 · 114,883–115,128 bp · −
ndhE · NC_050902.1 · 115,379–115,684 bp · −
ndhG · NC_050902.1 · 115,898–116,428 bp · −
ndhI · NC_050902.1 · 116,821–117,327 bp · −
ndhA · NC_050902.1 · 117,408–119,507 bp · −
ndhH · NC_050902.1 · 119,509–120,690 bp · −
rps15 · NC_050902.1 · 120,790–121,062 bp · −
ycf1 · NC_050902.1 · 121,442–126,919 bp · −
trnR-ACG · NC_050902.1 · 127,845–127,918 bp · −
rrn5 · NC_050902.1 · 128,162–128,282 bp · −
rrn4.5 · NC_050902.1 · 128,538–128,640 bp · −
rrn23 · NC_050902.1 · 128,739–131,549 bp · −
trnA-UGC · NC_050902.1 · 131,715–132,592 bp · −
trnI-GAU · NC_050902.1 · 132,657–133,675 bp · −
rrn16 · NC_050902.1 · 133,974–135,464 bp · −
trnV-GAC · NC_050902.1 · 135,691–135,762 bp · −
ycf15 · NC_050902.1 · 142,061–142,324 bp · −
ycf2 · NC_050902.1 · 142,400–149,239 bp · −
psbK · NC_050902.1 · 6,938–7,123 bp · +
psbI · NC_050902.1 · 7,515–7,625 bp · +
trnG-UCC · NC_050902.1 · 8,551–9,306 bp · +
trnR-UCU · NC_050902.1 · 9,487–9,558 bp · +
trnC-GCA · NC_050902.1 · 27,536–27,606 bp · +
petN · NC_050902.1 · 27,770–27,859 bp · +
trnT-GGU · NC_050902.1 · 30,454–30,525 bp · +
psbD · NC_050902.1 · 31,873–32,934 bp · +
psbC · NC_050902.1 · 32,882–34,303 bp · +
psbZ · NC_050902.1 · 34,975–35,163 bp · +
trnG-GCC · NC_050902.1 · 35,442–35,511 bp · +
trnS-GGA · NC_050902.1 · 44,356–44,442 bp · +
trnL-UAA · NC_050902.1 · 46,443–47,017 bp · +
trnF-GAA · NC_050902.1 · 47,303–47,375 bp · +
trnM-CAU · NC_050902.1 · 51,484–51,556 bp · +
rbcL · NC_050902.1 · 54,460–55,893 bp · +
accD · NC_050902.1 · 56,525–58,057 bp · +
psaI · NC_050902.1 · 58,512–58,622 bp · +
ycf4 · NC_050902.1 · 59,068–59,622 bp · +
cemA · NC_050902.1 · 60,282–60,971 bp · +
petA · NC_050902.1 · 61,186–62,148 bp · +
petL · NC_050902.1 · 64,821–64,916 bp · +
petG · NC_050902.1 · 65,095–65,208 bp · +
psaJ · NC_050902.1 · 65,930–66,064 bp · +
rpl33 · NC_050902.1 · 66,509–66,709 bp · +
rps18 · NC_050902.1 · 66,880–67,185 bp · +
rps12 · NC_050902.1 · 137,377–138,170 bp · +
psbB · NC_050902.1 · 71,207–72,733 bp · +
psbT · NC_050902.1 · 72,920–73,027 bp · +
psbH · NC_050902.1 · 73,307–73,546 bp · +
petB · NC_050902.1 · 73,672–75,039 bp · +
petD · NC_050902.1 · 75,227–76,417 bp · +
ycf2 · NC_050902.1 · 84,922–91,761 bp · +
ycf15 · NC_050902.1 · 91,837–92,100 bp · +
trnV-GAC · NC_050902.1 · 98,399–98,470 bp · +
rrn16 · NC_050902.1 · 98,697–100,187 bp · +
trnI-GAU · NC_050902.1 · 100,486–101,504 bp · +
trnA-UGC · NC_050902.1 · 101,569–102,446 bp · +
rrn23 · NC_050902.1 · 102,612–105,422 bp · +
rrn4.5 · NC_050902.1 · 105,521–105,623 bp · +
rrn5 · NC_050902.1 · 105,879–105,999 bp · +
trnR-ACG · NC_050902.1 · 106,243–106,316 bp · +
ycf1 · NC_050902.1 · 107,242–108,399 bp · +
rpl32 · NC_050902.1 · 110,957–111,127 bp · +
trnL-UAG · NC_050902.1 · 111,866–111,945 bp · +
ccsA · NC_050902.1 · 112,043–113,014 bp · +
trnN-GUU · NC_050902.1 · 127,249–127,320 bp · +
rps7 · NC_050902.1 · 138,224–138,691 bp · +
ndhB · NC_050902.1 · 138,966–141,173 bp · +
trnL-CAA · NC_050902.1 · 141,725–141,805 bp · +
trnI-CAU · NC_050902.1 · 149,328–149,401 bp · +
rpl23 · NC_050902.1 · 149,567–149,848 bp · +
rpl2 · NC_050902.1 · 149,867–151,354 bp · +
rps19 · NC_050902.1 · 151,424–151,459 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Salvia yangii
ANNOTATED PLASTOME
NC_050902.1
151,466 bp · 134 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37866 75733 113600 151466 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG ycf1 rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2 rps19
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
135 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 4 77 74 Locate
psbA gene − 401 1459 1059 Locate
trnK-UUU gene − 1691 4277 2587 Locate
matK gene − 2011 3540 1530 Locate
rps16 gene − 4848 5940 1093 Locate
trnQ-UUG gene − 6484 6555 72 Locate
psbK gene + 6938 7123 186 Locate
psbI gene + 7515 7625 111 Locate
trnS-GCU gene − 7770 7857 88 Locate
trnG-UCC gene + 8551 9306 756 Locate
trnR-UCU gene + 9487 9558 72 Locate
atpA gene − 9665 11188 1524 Locate
atpF gene − 11285 12537 1253 Locate
atpH gene − 12824 13069 246 Locate
atpI gene − 14086 14829 744 Locate
rps2 gene − 15054 15764 711 Locate
rpoC2 gene − 15976 20163 4188 Locate
rpoC1 gene − 20323 23155 2833 Locate
rpoB gene − 23161 26373 3213 Locate
trnC-GCA gene + 27536 27606 71 Locate
petN gene + 27770 27859 90 Locate
psbM gene − 28870 28974 105 Locate
trnD-GUC gene − 29493 29566 74 Locate
trnY-GUA gene − 29677 29760 84 Locate
trnE-UUC gene − 29832 29904 73 Locate
trnT-GGU gene + 30454 30525 72 Locate
psbD gene + 31873 32934 1062 Locate
psbC gene + 32882 34303 1422 Locate
trnS-UGA gene − 34548 34640 93 Locate
psbZ gene + 34975 35163 189 Locate
trnG-GCC gene + 35442 35511 70 Locate
trnfM-CAU gene − 35669 35742 74 Locate
rps14 gene − 35887 36189 303 Locate
psaB gene − 36312 38516 2205 Locate
psaA gene − 38542 40794 2253 Locate
ycf3 gene − 41598 43547 1950 Locate
trnS-GGA gene + 44356 44442 87 Locate
rps4 gene − 44720 45325 606 Locate
trnT-UGU gene − 45674 45746 73 Locate
trnL-UAA gene + 46443 47017 575 Locate
trnF-GAA gene + 47303 47375 73 Locate
ndhJ gene − 48023 48499 477 Locate
ndhK gene − 48610 49287 678 Locate
ndhC gene − 49339 49701 363 Locate
trnV-UAC gene − 50660 51303 644 Locate
trnM-CAU gene + 51484 51556 73 Locate
atpE gene − 51767 52168 402 Locate
atpB gene − 52165 53661 1497 Locate
rbcL gene + 54460 55893 1434 Locate
accD gene + 56525 58057 1533 Locate
psaI gene + 58512 58622 111 Locate
ycf4 gene + 59068 59622 555 Locate
cemA gene + 60282 60971 690 Locate
petA gene + 61186 62148 963 Locate
psbJ gene − 63145 63267 123 Locate
psbL gene − 63397 63513 117 Locate
psbF gene − 63537 63656 120 Locate
psbE gene − 63671 63922 252 Locate
petL gene + 64821 64916 96 Locate
petG gene + 65095 65208 114 Locate
trnW-CCA gene − 65324 65397 74 Locate
trnP-UGG gene − 65572 65645 74 Locate
psaJ gene + 65930 66064 135 Locate
rpl33 gene + 66509 66709 201 Locate
rps18 gene + 66880 67185 306 Locate
rpl20 gene − 67418 67804 387 Locate
rps12 gene − 68602 68715 114 Locate
clpP gene − 68839 70758 1920 Locate
psbB gene + 71207 72733 1527 Locate
psbT gene + 72920 73027 108 Locate
psbN gene − 73088 73219 132 Locate
psbH gene + 73307 73546 240 Locate
petB gene + 73672 75039 1368 Locate
petD gene + 75227 76417 1191 Locate
rpoA gene − 76589 77596 1008 Locate
rps11 gene − 77667 78083 417 Locate
rpl36 gene − 78193 78306 114 Locate
infA gene − 78402 78635 234 Locate
rps8 gene − 78756 79160 405 Locate
rpl14 gene − 79343 79711 369 Locate
rpl16 gene − 79844 81116 1273 Locate
rps3 gene − 81275 81937 663 Locate
rpl22 gene − 81922 82389 468 Locate
rps19 gene − 82459 82737 279 Locate
rpl2 gene − 82807 84294 1488 Locate
rpl23 gene − 84313 84594 282 Locate
trnI-CAU gene − 84760 84833 74 Locate
ycf2 gene + 84922 91761 6840 Locate
ycf15 gene + 91837 92100 264 Locate
trnL-CAA gene − 92356 92436 81 Locate
ndhB gene − 92988 95195 2208 Locate
rps7 gene − 95470 95937 468 Locate
rps12 gene − 95991 96784 794 Locate
trnV-GAC gene + 98399 98470 72 Locate
rrn16 gene + 98697 100187 1491 Locate
trnI-GAU gene + 100486 101504 1019 Locate
trnA-UGC gene + 101569 102446 878 Locate
rrn23 gene + 102612 105422 2811 Locate
rrn4.5 gene + 105521 105623 103 Locate
rrn5 gene + 105879 105999 121 Locate
trnR-ACG gene + 106243 106316 74 Locate
trnN-GUU gene − 106841 106912 72 Locate
ycf1 gene + 107242 108399 1158 Locate
ndhF gene − 108266 110497 2232 Locate
rpl32 gene + 110957 111127 171 Locate
trnL-UAG gene + 111866 111945 80 Locate
ccsA gene + 112043 113014 972 Locate
ndhD gene − 113249 114790 1542 Locate
psaC gene − 114883 115128 246 Locate
ndhE gene − 115379 115684 306 Locate
ndhG gene − 115898 116428 531 Locate
ndhI gene − 116821 117327 507 Locate
ndhA gene − 117408 119507 2100 Locate
ndhH gene − 119509 120690 1182 Locate
rps15 gene − 120790 121062 273 Locate
ycf1 gene − 121442 126919 5478 Locate
trnN-GUU gene + 127249 127320 72 Locate
trnR-ACG gene − 127845 127918 74 Locate
rrn5 gene − 128162 128282 121 Locate
rrn4.5 gene − 128538 128640 103 Locate
rrn23 gene − 128739 131549 2811 Locate
trnA-UGC gene − 131715 132592 878 Locate
trnI-GAU gene − 132657 133675 1019 Locate
rrn16 gene − 133974 135464 1491 Locate
trnV-GAC gene − 135691 135762 72 Locate
rps12 gene + 137377 138170 794 Locate
rps7 gene + 138224 138691 468 Locate
ndhB gene + 138966 141173 2208 Locate
trnL-CAA gene + 141725 141805 81 Locate
ycf15 gene − 142061 142324 264 Locate
ycf2 gene − 142400 149239 6840 Locate
trnI-CAU gene + 149328 149401 74 Locate
rpl23 gene + 149567 149848 282 Locate
rpl2 gene + 149867 151354 1488 Locate
rps19 gene + 151424 151459 36 Locate
Status Available
Accession NC_050902.1
Length 151,466 bp
GC content 38.1%
Annotated genes 134
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 27 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources