Scutellaria adsurgens chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ058240.1 · 4–77 bp · −
psbA · PQ058240.1 · 374–1,432 bp · −
trnK-UUU · PQ058240.1 · 1,674–4,255 bp · −
matK · PQ058240.1 · 1,964–3,490 bp · −
rps16 · PQ058240.1 · 5,157–6,315 bp · −
trnQ-UUG · PQ058240.1 · 7,061–7,132 bp · −
trnS-GCU · PQ058240.1 · 8,261–8,348 bp · −
atpA · PQ058240.1 · 10,148–11,671 bp · −
atpF · PQ058240.1 · 11,753–12,983 bp · −
atpH · PQ058240.1 · 13,344–13,589 bp · −
atpI · PQ058240.1 · 14,577–15,320 bp · −
rps2 · PQ058240.1 · 15,666–16,376 bp · −
rpoC2 · PQ058240.1 · 16,591–20,796 bp · −
rpoC1 · PQ058240.1 · 20,951–23,787 bp · −
rpoB · PQ058240.1 · 23,814–27,026 bp · −
psbM · PQ058240.1 · 30,129–30,233 bp · −
trnD-GUC · PQ058240.1 · 30,759–30,832 bp · −
trnY-GUA · PQ058240.1 · 30,946–31,029 bp · −
trnE-UUC · PQ058240.1 · 31,089–31,161 bp · −
trnS-UGA · PQ058240.1 · 35,780–35,871 bp · −
trnfM-CAU · PQ058240.1 · 36,875–36,948 bp · −
rps14 · PQ058240.1 · 37,103–37,405 bp · −
psaB · PQ058240.1 · 37,533–39,737 bp · −
psaA · PQ058240.1 · 39,763–42,015 bp · −
ycf3 · PQ058240.1 · 42,707–44,627 bp · −
rps4 · PQ058240.1 · 45,872–46,477 bp · −
trnT-UGU · PQ058240.1 · 46,822–46,894 bp · −
ndhJ · PQ058240.1 · 49,155–49,631 bp · −
ndhK · PQ058240.1 · 49,740–50,501 bp · −
ndhC · PQ058240.1 · 50,471–50,833 bp · −
trnV-UAC · PQ058240.1 · 51,819–52,471 bp · −
atpE · PQ058240.1 · 52,926–53,327 bp · −
atpB · PQ058240.1 · 53,324–54,820 bp · −
psbJ · PQ058240.1 · 64,554–64,676 bp · −
psbL · PQ058240.1 · 64,810–65,031 bp · −
psbF · PQ058240.1 · 64,950–65,069 bp · −
psbE · PQ058240.1 · 65,084–65,335 bp · −
trnW-CCA · PQ058240.1 · 66,716–66,789 bp · −
trnP-UGG · PQ058240.1 · 66,959–67,032 bp · −
rpl20 · PQ058240.1 · 68,829–69,215 bp · −
rps12 · PQ058240.1 · 69,998–70,123 bp · −
rps12 · PQ058240.1 · 97,273–98,063 bp · −
clpP · PQ058240.1 · 70,265–72,193 bp · −
psbN · PQ058240.1 · 74,532–74,663 bp · −
rpoA · PQ058240.1 · 78,227–79,027 bp · −
rps11 · PQ058240.1 · 79,099–79,515 bp · −
rpl36 · PQ058240.1 · 79,617–79,730 bp · −
infA · PQ058240.1 · 79,825–80,058 bp · −
rps8 · PQ058240.1 · 80,182–80,592 bp · −
rpl14 · PQ058240.1 · 80,745–81,113 bp · −
rpl16 · PQ058240.1 · 81,240–82,473 bp · −
rps3 · PQ058240.1 · 82,629–83,291 bp · −
rpl22 · PQ058240.1 · 83,293–83,748 bp · −
rps19 · PQ058240.1 · 83,808–84,086 bp · −
rpl2 · PQ058240.1 · 84,141–85,622 bp · −
rpl23 · PQ058240.1 · 85,641–85,922 bp · −
trnI-CAU · PQ058240.1 · 86,082–86,155 bp · −
trnL-CAA · PQ058240.1 · 93,643–93,723 bp · −
ndhB · PQ058240.1 · 94,266–96,423 bp · −
rps7 · PQ058240.1 · 96,752–97,219 bp · −
trnN-GUU · PQ058240.1 · 108,101–108,172 bp · −
ndhF · PQ058240.1 · 109,229–111,490 bp · −
ndhD · PQ058240.1 · 113,853–115,382 bp · −
psaC · PQ058240.1 · 115,483–115,728 bp · −
ndhE · PQ058240.1 · 115,984–116,289 bp · −
ndhG · PQ058240.1 · 116,506–117,036 bp · −
ndhI · PQ058240.1 · 117,403–117,903 bp · −
ndhA · PQ058240.1 · 117,989–120,110 bp · −
ndhH · PQ058240.1 · 120,112–121,293 bp · −
rps15 · PQ058240.1 · 121,390–121,662 bp · −
ycf1 · PQ058240.1 · 121,858–127,494 bp · −
trnR-ACG · PQ058240.1 · 128,333–128,406 bp · −
rrn5 · PQ058240.1 · 128,641–128,761 bp · −
rrn4.5 · PQ058240.1 · 129,009–129,111 bp · −
rrn23 · PQ058240.1 · 129,210–132,021 bp · −
trnA-UGC · PQ058240.1 · 132,191–133,078 bp · −
trnI-GAU · PQ058240.1 · 133,143–134,163 bp · −
ycf68 · PQ058240.1 · 133,715–134,008 bp · −
rrn16 · PQ058240.1 · 134,462–135,952 bp · −
trnV-GAC · PQ058240.1 · 136,179–136,250 bp · −
ycf15 · PQ058240.1 · 142,502–142,750 bp · −
ycf2 · PQ058240.1 · 142,841–149,641 bp · −
psbK · PQ058240.1 · 7,457–7,642 bp · +
psbI · PQ058240.1 · 8,032–8,142 bp · +
trnG-UCC · PQ058240.1 · 9,049–9,805 bp · +
trnR-UCU · PQ058240.1 · 9,980–10,051 bp · +
trnC-GCA · PQ058240.1 · 28,187–28,257 bp · +
petN · PQ058240.1 · 28,971–29,060 bp · +
trnT-GGU · PQ058240.1 · 31,737–31,808 bp · +
psbD · PQ058240.1 · 33,114–34,175 bp · +
psbC · PQ058240.1 · 34,123–35,544 bp · +
psbZ · PQ058240.1 · 36,187–36,375 bp · +
trnG-GCC · PQ058240.1 · 36,654–36,724 bp · +
trnS-GGA · PQ058240.1 · 45,510–45,596 bp · +
trnL-UAA · PQ058240.1 · 47,575–48,134 bp · +
trnF-GAA · PQ058240.1 · 48,435–48,507 bp · +
trnM-CAU · PQ058240.1 · 52,660–52,732 bp · +
rbcL · PQ058240.1 · 55,571–57,034 bp · +
accD · PQ058240.1 · 57,748–59,226 bp · +
psaI · PQ058240.1 · 59,933–60,043 bp · +
ycf4 · PQ058240.1 · 60,477–61,031 bp · +
cemA · PQ058240.1 · 61,780–62,379 bp · +
petA · PQ058240.1 · 62,586–63,548 bp · +
petL · PQ058240.1 · 66,213–66,308 bp · +
petG · PQ058240.1 · 66,484–66,597 bp · +
psaJ · PQ058240.1 · 67,241–67,438 bp · +
rpl33 · PQ058240.1 · 67,914–68,114 bp · +
rps18 · PQ058240.1 · 68,289–68,594 bp · +
rps12 · PQ058240.1 · 137,822–138,612 bp · +
psbB · PQ058240.1 · 72,645–74,171 bp · +
psbT · PQ058240.1 · 74,364–74,471 bp · +
psbH · PQ058240.1 · 74,767–74,988 bp · +
petB · PQ058240.1 · 75,113–76,483 bp · +
petD · PQ058240.1 · 76,666–77,872 bp · +
ycf2 · PQ058240.1 · 86,244–93,044 bp · +
ycf15 · PQ058240.1 · 93,135–93,383 bp · +
trnV-GAC · PQ058240.1 · 99,635–99,706 bp · +
rrn16 · PQ058240.1 · 99,933–101,423 bp · +
trnI-GAU · PQ058240.1 · 101,722–102,742 bp · +
trnA-UGC · PQ058240.1 · 102,807–103,694 bp · +
rrn23 · PQ058240.1 · 103,864–106,675 bp · +
rrn4.5 · PQ058240.1 · 106,774–106,876 bp · +
rrn5 · PQ058240.1 · 107,124–107,244 bp · +
trnR-ACG · PQ058240.1 · 107,479–107,552 bp · +
rpl32 · PQ058240.1 · 111,818–111,994 bp · +
trnL-UAG · PQ058240.1 · 112,441–112,520 bp · +
ccsA · PQ058240.1 · 112,622–113,596 bp · +
trnN-GUU · PQ058240.1 · 127,713–127,784 bp · +
rps7 · PQ058240.1 · 138,666–139,133 bp · +
ndhB · PQ058240.1 · 139,462–141,619 bp · +
trnL-CAA · PQ058240.1 · 142,162–142,242 bp · +
trnI-CAU · PQ058240.1 · 149,730–149,803 bp · +
rpl23 · PQ058240.1 · 149,963–150,244 bp · +
rpl2 · PQ058240.1 · 150,263–151,744 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria adsurgens
ANNOTATED PLASTOME
PQ058240.1
151,844 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37961 75922 113883 151844 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU ycf68 rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 4 77 74 Locate
psbA gene − 374 1432 1059 Locate
trnK-UUU gene − 1674 4255 2582 Locate
matK gene − 1964 3490 1527 Locate
rps16 gene − 5157 6315 1159 Locate
trnQ-UUG gene − 7061 7132 72 Locate
psbK gene + 7457 7642 186 Locate
psbI gene + 8032 8142 111 Locate
trnS-GCU gene − 8261 8348 88 Locate
trnG-UCC gene + 9049 9805 757 Locate
trnR-UCU gene + 9980 10051 72 Locate
atpA gene − 10148 11671 1524 Locate
atpF gene − 11753 12983 1231 Locate
atpH gene − 13344 13589 246 Locate
atpI gene − 14577 15320 744 Locate
rps2 gene − 15666 16376 711 Locate
rpoC2 gene − 16591 20796 4206 Locate
rpoC1 gene − 20951 23787 2837 Locate
rpoB gene − 23814 27026 3213 Locate
trnC-GCA gene + 28187 28257 71 Locate
petN gene + 28971 29060 90 Locate
psbM gene − 30129 30233 105 Locate
trnD-GUC gene − 30759 30832 74 Locate
trnY-GUA gene − 30946 31029 84 Locate
trnE-UUC gene − 31089 31161 73 Locate
trnT-GGU gene + 31737 31808 72 Locate
psbD gene + 33114 34175 1062 Locate
psbC gene + 34123 35544 1422 Locate
trnS-UGA gene − 35780 35871 92 Locate
psbZ gene + 36187 36375 189 Locate
trnG-GCC gene + 36654 36724 71 Locate
trnfM-CAU gene − 36875 36948 74 Locate
rps14 gene − 37103 37405 303 Locate
psaB gene − 37533 39737 2205 Locate
psaA gene − 39763 42015 2253 Locate
ycf3 gene − 42707 44627 1921 Locate
trnS-GGA gene + 45510 45596 87 Locate
rps4 gene − 45872 46477 606 Locate
trnT-UGU gene − 46822 46894 73 Locate
trnL-UAA gene + 47575 48134 560 Locate
trnF-GAA gene + 48435 48507 73 Locate
ndhJ gene − 49155 49631 477 Locate
ndhK gene − 49740 50501 762 Locate
ndhC gene − 50471 50833 363 Locate
trnV-UAC gene − 51819 52471 653 Locate
trnM-CAU gene + 52660 52732 73 Locate
atpE gene − 52926 53327 402 Locate
atpB gene − 53324 54820 1497 Locate
rbcL gene + 55571 57034 1464 Locate
accD gene + 57748 59226 1479 Locate
psaI gene + 59933 60043 111 Locate
ycf4 gene + 60477 61031 555 Locate
cemA gene + 61780 62379 600 Locate
petA gene + 62586 63548 963 Locate
psbJ gene − 64554 64676 123 Locate
psbL gene − 64810 65031 222 Locate
psbF gene − 64950 65069 120 Locate
psbE gene − 65084 65335 252 Locate
petL gene + 66213 66308 96 Locate
petG gene + 66484 66597 114 Locate
trnW-CCA gene − 66716 66789 74 Locate
trnP-UGG gene − 66959 67032 74 Locate
psaJ gene + 67241 67438 198 Locate
rpl33 gene + 67914 68114 201 Locate
rps18 gene + 68289 68594 306 Locate
rpl20 gene − 68829 69215 387 Locate
rps12 gene − 69998 70123 126 Locate
clpP gene − 70265 72193 1929 Locate
psbB gene + 72645 74171 1527 Locate
psbT gene + 74364 74471 108 Locate
psbN gene − 74532 74663 132 Locate
psbH gene + 74767 74988 222 Locate
petB gene + 75113 76483 1371 Locate
petD gene + 76666 77872 1207 Locate
rpoA gene − 78227 79027 801 Locate
rps11 gene − 79099 79515 417 Locate
rpl36 gene − 79617 79730 114 Locate
infA gene − 79825 80058 234 Locate
rps8 gene − 80182 80592 411 Locate
rpl14 gene − 80745 81113 369 Locate
rpl16 gene − 81240 82473 1234 Locate
rps3 gene − 82629 83291 663 Locate
rpl22 gene − 83293 83748 456 Locate
rps19 gene − 83808 84086 279 Locate
rpl2 gene − 84141 85622 1482 Locate
rpl23 gene − 85641 85922 282 Locate
trnI-CAU gene − 86082 86155 74 Locate
ycf2 gene + 86244 93044 6801 Locate
ycf15 gene + 93135 93383 249 Locate
trnL-CAA gene − 93643 93723 81 Locate
ndhB gene − 94266 96423 2158 Locate
rps7 gene − 96752 97219 468 Locate
rps12 gene − 97273 98063 791 Locate
trnV-GAC gene + 99635 99706 72 Locate
rrn16 gene + 99933 101423 1491 Locate
trnI-GAU gene + 101722 102742 1021 Locate
trnA-UGC gene + 102807 103694 888 Locate
rrn23 gene + 103864 106675 2812 Locate
rrn4.5 gene + 106774 106876 103 Locate
rrn5 gene + 107124 107244 121 Locate
trnR-ACG gene + 107479 107552 74 Locate
trnN-GUU gene − 108101 108172 72 Locate
ndhF gene − 109229 111490 2262 Locate
rpl32 gene + 111818 111994 177 Locate
trnL-UAG gene + 112441 112520 80 Locate
ccsA gene + 112622 113596 975 Locate
ndhD gene − 113853 115382 1530 Locate
psaC gene − 115483 115728 246 Locate
ndhE gene − 115984 116289 306 Locate
ndhG gene − 116506 117036 531 Locate
ndhI gene − 117403 117903 501 Locate
ndhA gene − 117989 120110 2122 Locate
ndhH gene − 120112 121293 1182 Locate
rps15 gene − 121390 121662 273 Locate
ycf1 gene − 121858 127494 5637 Locate
trnN-GUU gene + 127713 127784 72 Locate
trnR-ACG gene − 128333 128406 74 Locate
rrn5 gene − 128641 128761 121 Locate
rrn4.5 gene − 129009 129111 103 Locate
rrn23 gene − 129210 132021 2812 Locate
trnA-UGC gene − 132191 133078 888 Locate
trnI-GAU gene − 133143 134163 1021 Locate
ycf68 gene − 133715 134008 294 Locate
rrn16 gene − 134462 135952 1491 Locate
trnV-GAC gene − 136179 136250 72 Locate
rps12 gene + 137822 138612 791 Locate
rps7 gene + 138666 139133 468 Locate
ndhB gene + 139462 141619 2158 Locate
trnL-CAA gene + 142162 142242 81 Locate
ycf15 gene − 142502 142750 249 Locate
ycf2 gene − 142841 149641 6801 Locate
trnI-CAU gene + 149730 149803 74 Locate
rpl23 gene + 149963 150244 282 Locate
rpl2 gene + 150263 151744 1482 Locate
Status Available
Accession PQ058240.1
Length 151,844 bp
GC content 38.3%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources