Scutellaria agrestis chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ058275.1 · 3–76 bp · −
psbA · PQ058275.1 · 377–1,435 bp · −
trnK-UUU · PQ058275.1 · 1,676–4,274 bp · −
matK · PQ058275.1 · 1,944–3,515 bp · −
rps16 · PQ058275.1 · 5,184–6,311 bp · −
trnQ-UUG · PQ058275.1 · 7,455–7,526 bp · −
trnS-GCU · PQ058275.1 · 8,652–8,739 bp · −
atpA · PQ058275.1 · 10,548–12,071 bp · −
atpF · PQ058275.1 · 12,155–13,389 bp · −
atpH · PQ058275.1 · 13,753–13,998 bp · −
atpI · PQ058275.1 · 14,981–15,724 bp · −
rps2 · PQ058275.1 · 16,067–16,777 bp · −
rpoC2 · PQ058275.1 · 16,994–21,202 bp · −
rpoC1 · PQ058275.1 · 21,348–24,183 bp · −
rpoB · PQ058275.1 · 24,210–27,422 bp · −
psbM · PQ058275.1 · 30,249–30,362 bp · −
trnD-GUC · PQ058275.1 · 30,890–30,963 bp · −
trnY-GUA · PQ058275.1 · 31,077–31,160 bp · −
trnE-UUC · PQ058275.1 · 31,220–31,292 bp · −
trnS-UGA · PQ058275.1 · 35,914–36,005 bp · −
trnfM-CAU · PQ058275.1 · 37,009–37,082 bp · −
rps14 · PQ058275.1 · 37,232–37,534 bp · −
psaB · PQ058275.1 · 37,662–39,866 bp · −
psaA · PQ058275.1 · 39,892–42,144 bp · −
ycf3 · PQ058275.1 · 42,834–44,760 bp · −
rps4 · PQ058275.1 · 46,012–46,617 bp · −
trnT-UGU · PQ058275.1 · 46,957–47,029 bp · −
ndhJ · PQ058275.1 · 49,304–49,780 bp · −
ndhK · PQ058275.1 · 49,888–50,565 bp · −
ndhC · PQ058275.1 · 50,619–50,981 bp · −
trnV-UAC · PQ058275.1 · 51,438–52,091 bp · −
atpE · PQ058275.1 · 52,553–52,954 bp · −
atpB · PQ058275.1 · 52,951–54,447 bp · −
psbJ · PQ058275.1 · 64,205–64,327 bp · −
psbL · PQ058275.1 · 64,461–64,682 bp · −
psbF · PQ058275.1 · 64,601–64,720 bp · −
psbE · PQ058275.1 · 64,735–64,986 bp · −
trnW-CCA · PQ058275.1 · 66,396–66,469 bp · −
trnP-UGG · PQ058275.1 · 66,639–66,712 bp · −
rpl20 · PQ058275.1 · 68,527–68,913 bp · −
rps12 · PQ058275.1 · 69,710–69,823 bp · −
rps12 · PQ058275.1 · 97,028–97,818 bp · −
clpP · PQ058275.1 · 69,966–71,907 bp · −
psbN · PQ058275.1 · 74,260–74,391 bp · −
rpoA · PQ058275.1 · 77,775–78,782 bp · −
rps11 · PQ058275.1 · 78,854–79,270 bp · −
rpl36 · PQ058275.1 · 79,371–79,484 bp · −
infA · PQ058275.1 · 79,580–79,813 bp · −
rps8 · PQ058275.1 · 79,931–80,329 bp · −
rpl14 · PQ058275.1 · 80,495–80,863 bp · −
rpl16 · PQ058275.1 · 80,975–82,239 bp · −
rps3 · PQ058275.1 · 82,395–83,057 bp · −
rpl22 · PQ058275.1 · 83,084–83,515 bp · −
rps19 · PQ058275.1 · 83,575–83,853 bp · −
rpl2 · PQ058275.1 · 83,908–85,390 bp · −
rpl23 · PQ058275.1 · 85,409–85,690 bp · −
trnI-CAU · PQ058275.1 · 85,841–85,914 bp · −
trnL-CAA · PQ058275.1 · 93,407–93,487 bp · −
ndhB · PQ058275.1 · 94,021–96,178 bp · −
rps7 · PQ058275.1 · 96,507–96,974 bp · −
trnN-GUU · PQ058275.1 · 107,857–107,928 bp · −
ndhF · PQ058275.1 · 109,005–111,230 bp · −
ndhD · PQ058275.1 · 113,749–115,278 bp · −
psaC · PQ058275.1 · 115,378–115,623 bp · −
ndhE · PQ058275.1 · 115,862–116,167 bp · −
ndhG · PQ058275.1 · 116,389–116,919 bp · −
ndhI · PQ058275.1 · 117,283–117,783 bp · −
ndhA · PQ058275.1 · 117,864–119,961 bp · −
ndhH · PQ058275.1 · 119,963–121,144 bp · −
rps15 · PQ058275.1 · 121,233–121,505 bp · −
ycf1 · PQ058275.1 · 121,802–127,336 bp · −
trnR-ACG · PQ058275.1 · 128,183–128,256 bp · −
rrn5 · PQ058275.1 · 128,491–128,611 bp · −
rrn4.5 · PQ058275.1 · 128,859–128,961 bp · −
rrn23 · PQ058275.1 · 129,060–131,872 bp · −
trnA-UGC · PQ058275.1 · 132,042–132,929 bp · −
trnI-GAU · PQ058275.1 · 132,994–134,013 bp · −
ycf68 · PQ058275.1 · 133,565–133,858 bp · −
rrn16 · PQ058275.1 · 134,312–135,802 bp · −
trnV-GAC · PQ058275.1 · 136,030–136,101 bp · −
ycf15 · PQ058275.1 · 142,332–142,580 bp · −
ycf2 · PQ058275.1 · 142,671–149,480 bp · −
psbK · PQ058275.1 · 7,852–8,037 bp · +
psbI · PQ058275.1 · 8,431–8,541 bp · +
trnG-UCC · PQ058275.1 · 9,446–10,205 bp · +
trnR-UCU · PQ058275.1 · 10,380–10,451 bp · +
trnC-GCA · PQ058275.1 · 28,380–28,450 bp · +
petN · PQ058275.1 · 29,163–29,252 bp · +
trnT-GGU · PQ058275.1 · 31,856–31,927 bp · +
psbD · PQ058275.1 · 33,240–34,301 bp · +
psbC · PQ058275.1 · 34,249–35,670 bp · +
psbZ · PQ058275.1 · 36,325–36,513 bp · +
trnG-GCC · PQ058275.1 · 36,791–36,861 bp · +
trnS-GGA · PQ058275.1 · 45,641–45,727 bp · +
trnL-UAA · PQ058275.1 · 47,717–48,284 bp · +
trnF-GAA · PQ058275.1 · 48,584–48,656 bp · +
trnM-CAU · PQ058275.1 · 52,272–52,344 bp · +
rbcL · PQ058275.1 · 55,199–56,659 bp · +
accD · PQ058275.1 · 57,360–58,838 bp · +
psaI · PQ058275.1 · 59,573–59,683 bp · +
ycf4 · PQ058275.1 · 60,117–60,671 bp · +
cemA · PQ058275.1 · 61,412–62,011 bp · +
petA · PQ058275.1 · 62,218–63,180 bp · +
petL · PQ058275.1 · 65,893–65,988 bp · +
petG · PQ058275.1 · 66,164–66,277 bp · +
psaJ · PQ058275.1 · 66,985–67,119 bp · +
rpl33 · PQ058275.1 · 67,605–67,805 bp · +
rps18 · PQ058275.1 · 67,982–68,287 bp · +
rps12 · PQ058275.1 · 137,665–138,455 bp · +
psbB · PQ058275.1 · 72,371–73,897 bp · +
psbT · PQ058275.1 · 74,092–74,199 bp · +
psbH · PQ058275.1 · 74,495–74,716 bp · +
petB · PQ058275.1 · 74,842–76,212 bp · +
petD · PQ058275.1 · 76,401–77,612 bp · +
ycf2 · PQ058275.1 · 86,003–92,812 bp · +
ycf15 · PQ058275.1 · 92,903–93,151 bp · +
trnV-GAC · PQ058275.1 · 99,382–99,453 bp · +
rrn16 · PQ058275.1 · 99,681–101,171 bp · +
trnI-GAU · PQ058275.1 · 101,470–102,489 bp · +
trnA-UGC · PQ058275.1 · 102,554–103,441 bp · +
rrn23 · PQ058275.1 · 103,611–106,423 bp · +
rrn4.5 · PQ058275.1 · 106,522–106,624 bp · +
rrn5 · PQ058275.1 · 106,872–106,992 bp · +
trnR-ACG · PQ058275.1 · 107,227–107,300 bp · +
rpl32 · PQ058275.1 · 111,749–111,925 bp · +
trnL-UAG · PQ058275.1 · 112,355–112,434 bp · +
ccsA · PQ058275.1 · 112,540–113,514 bp · +
trnN-GUU · PQ058275.1 · 127,555–127,626 bp · +
rps7 · PQ058275.1 · 138,509–138,976 bp · +
ndhB · PQ058275.1 · 139,305–141,462 bp · +
trnL-CAA · PQ058275.1 · 141,996–142,076 bp · +
trnI-CAU · PQ058275.1 · 149,569–149,642 bp · +
rpl23 · PQ058275.1 · 149,793–150,074 bp · +
rpl2 · PQ058275.1 · 150,093–151,575 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria agrestis
ANNOTATED PLASTOME
PQ058275.1
151,670 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37918 75835 113752 151670 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU ycf68 rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 3 76 74 Locate
psbA gene − 377 1435 1059 Locate
trnK-UUU gene − 1676 4274 2599 Locate
matK gene − 1944 3515 1572 Locate
rps16 gene − 5184 6311 1128 Locate
trnQ-UUG gene − 7455 7526 72 Locate
psbK gene + 7852 8037 186 Locate
psbI gene + 8431 8541 111 Locate
trnS-GCU gene − 8652 8739 88 Locate
trnG-UCC gene + 9446 10205 760 Locate
trnR-UCU gene + 10380 10451 72 Locate
atpA gene − 10548 12071 1524 Locate
atpF gene − 12155 13389 1235 Locate
atpH gene − 13753 13998 246 Locate
atpI gene − 14981 15724 744 Locate
rps2 gene − 16067 16777 711 Locate
rpoC2 gene − 16994 21202 4209 Locate
rpoC1 gene − 21348 24183 2836 Locate
rpoB gene − 24210 27422 3213 Locate
trnC-GCA gene + 28380 28450 71 Locate
petN gene + 29163 29252 90 Locate
psbM gene − 30249 30362 114 Locate
trnD-GUC gene − 30890 30963 74 Locate
trnY-GUA gene − 31077 31160 84 Locate
trnE-UUC gene − 31220 31292 73 Locate
trnT-GGU gene + 31856 31927 72 Locate
psbD gene + 33240 34301 1062 Locate
psbC gene + 34249 35670 1422 Locate
trnS-UGA gene − 35914 36005 92 Locate
psbZ gene + 36325 36513 189 Locate
trnG-GCC gene + 36791 36861 71 Locate
trnfM-CAU gene − 37009 37082 74 Locate
rps14 gene − 37232 37534 303 Locate
psaB gene − 37662 39866 2205 Locate
psaA gene − 39892 42144 2253 Locate
ycf3 gene − 42834 44760 1927 Locate
trnS-GGA gene + 45641 45727 87 Locate
rps4 gene − 46012 46617 606 Locate
trnT-UGU gene − 46957 47029 73 Locate
trnL-UAA gene + 47717 48284 568 Locate
trnF-GAA gene + 48584 48656 73 Locate
ndhJ gene − 49304 49780 477 Locate
ndhK gene − 49888 50565 678 Locate
ndhC gene − 50619 50981 363 Locate
trnV-UAC gene − 51438 52091 654 Locate
trnM-CAU gene + 52272 52344 73 Locate
atpE gene − 52553 52954 402 Locate
atpB gene − 52951 54447 1497 Locate
rbcL gene + 55199 56659 1461 Locate
accD gene + 57360 58838 1479 Locate
psaI gene + 59573 59683 111 Locate
ycf4 gene + 60117 60671 555 Locate
cemA gene + 61412 62011 600 Locate
petA gene + 62218 63180 963 Locate
psbJ gene − 64205 64327 123 Locate
psbL gene − 64461 64682 222 Locate
psbF gene − 64601 64720 120 Locate
psbE gene − 64735 64986 252 Locate
petL gene + 65893 65988 96 Locate
petG gene + 66164 66277 114 Locate
trnW-CCA gene − 66396 66469 74 Locate
trnP-UGG gene − 66639 66712 74 Locate
psaJ gene + 66985 67119 135 Locate
rpl33 gene + 67605 67805 201 Locate
rps18 gene + 67982 68287 306 Locate
rpl20 gene − 68527 68913 387 Locate
rps12 gene − 69710 69823 114 Locate
clpP gene − 69966 71907 1942 Locate
psbB gene + 72371 73897 1527 Locate
psbT gene + 74092 74199 108 Locate
psbN gene − 74260 74391 132 Locate
psbH gene + 74495 74716 222 Locate
petB gene + 74842 76212 1371 Locate
petD gene + 76401 77612 1212 Locate
rpoA gene − 77775 78782 1008 Locate
rps11 gene − 78854 79270 417 Locate
rpl36 gene − 79371 79484 114 Locate
infA gene − 79580 79813 234 Locate
rps8 gene − 79931 80329 399 Locate
rpl14 gene − 80495 80863 369 Locate
rpl16 gene − 80975 82239 1265 Locate
rps3 gene − 82395 83057 663 Locate
rpl22 gene − 83084 83515 432 Locate
rps19 gene − 83575 83853 279 Locate
rpl2 gene − 83908 85390 1483 Locate
rpl23 gene − 85409 85690 282 Locate
trnI-CAU gene − 85841 85914 74 Locate
ycf2 gene + 86003 92812 6810 Locate
ycf15 gene + 92903 93151 249 Locate
trnL-CAA gene − 93407 93487 81 Locate
ndhB gene − 94021 96178 2158 Locate
rps7 gene − 96507 96974 468 Locate
rps12 gene − 97028 97818 791 Locate
trnV-GAC gene + 99382 99453 72 Locate
rrn16 gene + 99681 101171 1491 Locate
trnI-GAU gene + 101470 102489 1020 Locate
trnA-UGC gene + 102554 103441 888 Locate
rrn23 gene + 103611 106423 2813 Locate
rrn4.5 gene + 106522 106624 103 Locate
rrn5 gene + 106872 106992 121 Locate
trnR-ACG gene + 107227 107300 74 Locate
trnN-GUU gene − 107857 107928 72 Locate
ndhF gene − 109005 111230 2226 Locate
rpl32 gene + 111749 111925 177 Locate
trnL-UAG gene + 112355 112434 80 Locate
ccsA gene + 112540 113514 975 Locate
ndhD gene − 113749 115278 1530 Locate
psaC gene − 115378 115623 246 Locate
ndhE gene − 115862 116167 306 Locate
ndhG gene − 116389 116919 531 Locate
ndhI gene − 117283 117783 501 Locate
ndhA gene − 117864 119961 2098 Locate
ndhH gene − 119963 121144 1182 Locate
rps15 gene − 121233 121505 273 Locate
ycf1 gene − 121802 127336 5535 Locate
trnN-GUU gene + 127555 127626 72 Locate
trnR-ACG gene − 128183 128256 74 Locate
rrn5 gene − 128491 128611 121 Locate
rrn4.5 gene − 128859 128961 103 Locate
rrn23 gene − 129060 131872 2813 Locate
trnA-UGC gene − 132042 132929 888 Locate
trnI-GAU gene − 132994 134013 1020 Locate
ycf68 gene − 133565 133858 294 Locate
rrn16 gene − 134312 135802 1491 Locate
trnV-GAC gene − 136030 136101 72 Locate
rps12 gene + 137665 138455 791 Locate
rps7 gene + 138509 138976 468 Locate
ndhB gene + 139305 141462 2158 Locate
trnL-CAA gene + 141996 142076 81 Locate
ycf15 gene − 142332 142580 249 Locate
ycf2 gene − 142671 149480 6810 Locate
trnI-CAU gene + 149569 149642 74 Locate
rpl23 gene + 149793 150074 282 Locate
rpl2 gene + 150093 151575 1483 Locate
Status Available
Accession PQ058275.1
Length 151,670 bp
GC content 38.4%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources