Scutellaria albida subsp. velenovskyi chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ059241.1 · 4–77 bp · −
psbA · PQ059241.1 · 378–1,436 bp · −
trnK-UUU · PQ059241.1 · 1,678–4,271 bp · −
matK · PQ059241.1 · 1,967–3,511 bp · −
rps16 · PQ059241.1 · 5,177–6,348 bp · −
trnQ-UUG · PQ059241.1 · 7,460–7,531 bp · −
trnS-GCU · PQ059241.1 · 8,648–8,735 bp · −
atpA · PQ059241.1 · 10,513–12,036 bp · −
atpF · PQ059241.1 · 12,121–13,349 bp · −
atpH · PQ059241.1 · 13,718–13,963 bp · −
atpI · PQ059241.1 · 14,957–15,700 bp · −
rps2 · PQ059241.1 · 16,048–16,758 bp · −
rpoC2 · PQ059241.1 · 16,976–21,175 bp · −
rpoC1 · PQ059241.1 · 21,330–24,148 bp · −
rpoB · PQ059241.1 · 24,175–27,387 bp · −
psbM · PQ059241.1 · 30,473–30,577 bp · −
trnD-GUC · PQ059241.1 · 31,109–31,182 bp · −
trnY-GUA · PQ059241.1 · 31,296–31,379 bp · −
trnE-UUC · PQ059241.1 · 31,439–31,511 bp · −
trnS-UGA · PQ059241.1 · 36,135–36,226 bp · −
trnfM-CAU · PQ059241.1 · 37,222–37,295 bp · −
rps14 · PQ059241.1 · 37,445–37,747 bp · −
psaB · PQ059241.1 · 37,877–40,081 bp · −
psaA · PQ059241.1 · 40,107–42,359 bp · −
ycf3 · PQ059241.1 · 43,062–44,988 bp · −
rps4 · PQ059241.1 · 46,233–46,838 bp · −
trnT-UGU · PQ059241.1 · 47,179–47,251 bp · −
ndhJ · PQ059241.1 · 49,505–49,981 bp · −
ndhK · PQ059241.1 · 50,086–50,763 bp · −
ndhC · PQ059241.1 · 50,816–51,178 bp · −
trnV-UAC · PQ059241.1 · 52,171–52,829 bp · −
atpE · PQ059241.1 · 53,291–53,692 bp · −
atpB · PQ059241.1 · 53,689–55,185 bp · −
psbJ · PQ059241.1 · 64,353–64,475 bp · −
psbL · PQ059241.1 · 64,609–64,725 bp · −
psbF · PQ059241.1 · 64,749–64,868 bp · −
psbE · PQ059241.1 · 64,883–65,134 bp · −
trnW-CCA · PQ059241.1 · 66,548–66,621 bp · −
trnP-UGG · PQ059241.1 · 66,791–66,864 bp · −
rpl20 · PQ059241.1 · 68,666–69,052 bp · −
rps12 · PQ059241.1 · 69,847–69,960 bp · −
rps12 · PQ059241.1 · 97,151–97,941 bp · −
clpP · PQ059241.1 · 70,102–72,037 bp · −
psbN · PQ059241.1 · 74,365–74,496 bp · −
rpoA · PQ059241.1 · 77,877–78,890 bp · −
rps11 · PQ059241.1 · 78,962–79,378 bp · −
rpl36 · PQ059241.1 · 79,480–79,593 bp · −
infA · PQ059241.1 · 79,689–79,922 bp · −
rps8 · PQ059241.1 · 80,046–80,456 bp · −
rpl14 · PQ059241.1 · 80,620–80,988 bp · −
rpl16 · PQ059241.1 · 81,115–82,345 bp · −
rps3 · PQ059241.1 · 82,500–83,162 bp · −
rpl22 · PQ059241.1 · 83,164–83,619 bp · −
rps19 · PQ059241.1 · 83,679–83,957 bp · −
rpl2 · PQ059241.1 · 84,013–85,495 bp · −
rpl23 · PQ059241.1 · 85,514–85,795 bp · −
trnI-CAU · PQ059241.1 · 85,955–86,028 bp · −
trnL-CAA · PQ059241.1 · 93,521–93,601 bp · −
ndhB · PQ059241.1 · 94,144–96,355 bp · −
rps7 · PQ059241.1 · 96,630–97,097 bp · −
trnN-GUU · PQ059241.1 · 107,979–108,050 bp · −
ndhF · PQ059241.1 · 109,127–111,367 bp · −
ndhD · PQ059241.1 · 113,802–115,304 bp · −
psaC · PQ059241.1 · 115,434–115,679 bp · −
ndhE · PQ059241.1 · 115,935–116,240 bp · −
ndhG · PQ059241.1 · 116,464–116,994 bp · −
ndhI · PQ059241.1 · 117,343–117,843 bp · −
ndhA · PQ059241.1 · 117,924–120,034 bp · −
ndhH · PQ059241.1 · 120,036–121,247 bp · −
rps15 · PQ059241.1 · 121,314–121,586 bp · −
ycf1 · PQ059241.1 · 121,855–127,530 bp · −
trnR-ACG · PQ059241.1 · 128,376–128,449 bp · −
rrn5 · PQ059241.1 · 128,684–128,804 bp · −
rrn4.5 · PQ059241.1 · 129,052–129,154 bp · −
rrn23 · PQ059241.1 · 129,253–132,064 bp · −
trnA-UGC · PQ059241.1 · 132,234–133,119 bp · −
trnI-GAU · PQ059241.1 · 133,184–134,202 bp · −
ycf68 · PQ059241.1 · 133,754–134,047 bp · −
rrn16 · PQ059241.1 · 134,501–135,991 bp · −
trnV-GAC · PQ059241.1 · 136,214–136,285 bp · −
ycf2 · PQ059241.1 · 142,873–149,682 bp · −
psbK · PQ059241.1 · 7,856–8,041 bp · +
psbI · PQ059241.1 · 8,439–8,549 bp · +
trnG-UCC · PQ059241.1 · 9,426–10,179 bp · +
trnR-UCU · PQ059241.1 · 10,345–10,416 bp · +
trnC-GCA · PQ059241.1 · 28,564–28,634 bp · +
petN · PQ059241.1 · 29,388–29,477 bp · +
trnT-GGU · PQ059241.1 · 32,083–32,154 bp · +
psbD · PQ059241.1 · 33,470–34,531 bp · +
psbC · PQ059241.1 · 34,479–35,900 bp · +
psbZ · PQ059241.1 · 36,546–36,734 bp · +
trnG-GCC · PQ059241.1 · 37,007–37,077 bp · +
trnS-GGA · PQ059241.1 · 45,863–45,949 bp · +
trnL-UAA · PQ059241.1 · 47,911–48,477 bp · +
trnF-GAA · PQ059241.1 · 48,783–48,855 bp · +
trnM-CAU · PQ059241.1 · 53,010–53,082 bp · +
rbcL · PQ059241.1 · 55,933–57,396 bp · +
accD · PQ059241.1 · 58,122–59,612 bp · +
psaI · PQ059241.1 · 59,851–59,961 bp · +
ycf4 · PQ059241.1 · 60,395–60,949 bp · +
cemA · PQ059241.1 · 61,563–62,162 bp · +
petA · PQ059241.1 · 62,369–63,331 bp · +
petL · PQ059241.1 · 66,055–66,150 bp · +
petG · PQ059241.1 · 66,326–66,439 bp · +
psaJ · PQ059241.1 · 67,137–67,271 bp · +
rpl33 · PQ059241.1 · 67,745–67,945 bp · +
rps18 · PQ059241.1 · 68,120–68,425 bp · +
rps12 · PQ059241.1 · 137,858–138,648 bp · +
psbB · PQ059241.1 · 72,491–74,017 bp · +
psbT · PQ059241.1 · 74,197–74,304 bp · +
psbH · PQ059241.1 · 74,600–74,821 bp · +
petB · PQ059241.1 · 74,946–76,314 bp · +
petD · PQ059241.1 · 76,503–77,714 bp · +
ycf2 · PQ059241.1 · 86,117–92,926 bp · +
trnV-GAC · PQ059241.1 · 99,514–99,585 bp · +
rrn16 · PQ059241.1 · 99,808–101,298 bp · +
trnI-GAU · PQ059241.1 · 101,597–102,615 bp · +
trnA-UGC · PQ059241.1 · 102,680–103,565 bp · +
rrn23 · PQ059241.1 · 103,735–106,546 bp · +
rrn4.5 · PQ059241.1 · 106,645–106,747 bp · +
rrn5 · PQ059241.1 · 106,995–107,115 bp · +
trnR-ACG · PQ059241.1 · 107,350–107,423 bp · +
rpl32 · PQ059241.1 · 111,815–111,991 bp · +
trnL-UAG · PQ059241.1 · 112,427–112,506 bp · +
ccsA · PQ059241.1 · 112,590–113,564 bp · +
trnN-GUU · PQ059241.1 · 127,749–127,820 bp · +
rps7 · PQ059241.1 · 138,702–139,169 bp · +
ndhB · PQ059241.1 · 139,444–141,655 bp · +
trnL-CAA · PQ059241.1 · 142,198–142,278 bp · +
trnI-CAU · PQ059241.1 · 149,771–149,844 bp · +
rpl23 · PQ059241.1 · 150,004–150,285 bp · +
rpl2 · PQ059241.1 · 150,304–151,786 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria albida subsp. velenovskyi
ANNOTATED PLASTOME
PQ059241.1
151,882 bp · 131 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37970 75941 113912 151882 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU ycf68 rrn16 trnV-GAC ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
132 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 4 77 74 Locate
psbA gene − 378 1436 1059 Locate
trnK-UUU gene − 1678 4271 2594 Locate
matK gene − 1967 3511 1545 Locate
rps16 gene − 5177 6348 1172 Locate
trnQ-UUG gene − 7460 7531 72 Locate
psbK gene + 7856 8041 186 Locate
psbI gene + 8439 8549 111 Locate
trnS-GCU gene − 8648 8735 88 Locate
trnG-UCC gene + 9426 10179 754 Locate
trnR-UCU gene + 10345 10416 72 Locate
atpA gene − 10513 12036 1524 Locate
atpF gene − 12121 13349 1229 Locate
atpH gene − 13718 13963 246 Locate
atpI gene − 14957 15700 744 Locate
rps2 gene − 16048 16758 711 Locate
rpoC2 gene − 16976 21175 4200 Locate
rpoC1 gene − 21330 24148 2819 Locate
rpoB gene − 24175 27387 3213 Locate
trnC-GCA gene + 28564 28634 71 Locate
petN gene + 29388 29477 90 Locate
psbM gene − 30473 30577 105 Locate
trnD-GUC gene − 31109 31182 74 Locate
trnY-GUA gene − 31296 31379 84 Locate
trnE-UUC gene − 31439 31511 73 Locate
trnT-GGU gene + 32083 32154 72 Locate
psbD gene + 33470 34531 1062 Locate
psbC gene + 34479 35900 1422 Locate
trnS-UGA gene − 36135 36226 92 Locate
psbZ gene + 36546 36734 189 Locate
trnG-GCC gene + 37007 37077 71 Locate
trnfM-CAU gene − 37222 37295 74 Locate
rps14 gene − 37445 37747 303 Locate
psaB gene − 37877 40081 2205 Locate
psaA gene − 40107 42359 2253 Locate
ycf3 gene − 43062 44988 1927 Locate
trnS-GGA gene + 45863 45949 87 Locate
rps4 gene − 46233 46838 606 Locate
trnT-UGU gene − 47179 47251 73 Locate
trnL-UAA gene + 47911 48477 567 Locate
trnF-GAA gene + 48783 48855 73 Locate
ndhJ gene − 49505 49981 477 Locate
ndhK gene − 50086 50763 678 Locate
ndhC gene − 50816 51178 363 Locate
trnV-UAC gene − 52171 52829 659 Locate
trnM-CAU gene + 53010 53082 73 Locate
atpE gene − 53291 53692 402 Locate
atpB gene − 53689 55185 1497 Locate
rbcL gene + 55933 57396 1464 Locate
accD gene + 58122 59612 1491 Locate
psaI gene + 59851 59961 111 Locate
ycf4 gene + 60395 60949 555 Locate
cemA gene + 61563 62162 600 Locate
petA gene + 62369 63331 963 Locate
psbJ gene − 64353 64475 123 Locate
psbL gene − 64609 64725 117 Locate
psbF gene − 64749 64868 120 Locate
psbE gene − 64883 65134 252 Locate
petL gene + 66055 66150 96 Locate
petG gene + 66326 66439 114 Locate
trnW-CCA gene − 66548 66621 74 Locate
trnP-UGG gene − 66791 66864 74 Locate
psaJ gene + 67137 67271 135 Locate
rpl33 gene + 67745 67945 201 Locate
rps18 gene + 68120 68425 306 Locate
rpl20 gene − 68666 69052 387 Locate
rps12 gene − 69847 69960 114 Locate
clpP gene − 70102 72037 1936 Locate
psbB gene + 72491 74017 1527 Locate
psbT gene + 74197 74304 108 Locate
psbN gene − 74365 74496 132 Locate
psbH gene + 74600 74821 222 Locate
petB gene + 74946 76314 1369 Locate
petD gene + 76503 77714 1212 Locate
rpoA gene − 77877 78890 1014 Locate
rps11 gene − 78962 79378 417 Locate
rpl36 gene − 79480 79593 114 Locate
infA gene − 79689 79922 234 Locate
rps8 gene − 80046 80456 411 Locate
rpl14 gene − 80620 80988 369 Locate
rpl16 gene − 81115 82345 1231 Locate
rps3 gene − 82500 83162 663 Locate
rpl22 gene − 83164 83619 456 Locate
rps19 gene − 83679 83957 279 Locate
rpl2 gene − 84013 85495 1483 Locate
rpl23 gene − 85514 85795 282 Locate
trnI-CAU gene − 85955 86028 74 Locate
ycf2 gene + 86117 92926 6810 Locate
trnL-CAA gene − 93521 93601 81 Locate
ndhB gene − 94144 96355 2212 Locate
rps7 gene − 96630 97097 468 Locate
rps12 gene − 97151 97941 791 Locate
trnV-GAC gene + 99514 99585 72 Locate
rrn16 gene + 99808 101298 1491 Locate
trnI-GAU gene + 101597 102615 1019 Locate
trnA-UGC gene + 102680 103565 886 Locate
rrn23 gene + 103735 106546 2812 Locate
rrn4.5 gene + 106645 106747 103 Locate
rrn5 gene + 106995 107115 121 Locate
trnR-ACG gene + 107350 107423 74 Locate
trnN-GUU gene − 107979 108050 72 Locate
ndhF gene − 109127 111367 2241 Locate
rpl32 gene + 111815 111991 177 Locate
trnL-UAG gene + 112427 112506 80 Locate
ccsA gene + 112590 113564 975 Locate
ndhD gene − 113802 115304 1503 Locate
psaC gene − 115434 115679 246 Locate
ndhE gene − 115935 116240 306 Locate
ndhG gene − 116464 116994 531 Locate
ndhI gene − 117343 117843 501 Locate
ndhA gene − 117924 120034 2111 Locate
ndhH gene − 120036 121247 1212 Locate
rps15 gene − 121314 121586 273 Locate
ycf1 gene − 121855 127530 5676 Locate
trnN-GUU gene + 127749 127820 72 Locate
trnR-ACG gene − 128376 128449 74 Locate
rrn5 gene − 128684 128804 121 Locate
rrn4.5 gene − 129052 129154 103 Locate
rrn23 gene − 129253 132064 2812 Locate
trnA-UGC gene − 132234 133119 886 Locate
trnI-GAU gene − 133184 134202 1019 Locate
ycf68 gene − 133754 134047 294 Locate
rrn16 gene − 134501 135991 1491 Locate
trnV-GAC gene − 136214 136285 72 Locate
rps12 gene + 137858 138648 791 Locate
rps7 gene + 138702 139169 468 Locate
ndhB gene + 139444 141655 2212 Locate
trnL-CAA gene + 142198 142278 81 Locate
ycf2 gene − 142873 149682 6810 Locate
trnI-CAU gene + 149771 149844 74 Locate
rpl23 gene + 150004 150285 282 Locate
rpl2 gene + 150304 151786 1483 Locate
Status Available
Accession PQ059241.1
Length 151,882 bp
GC content 38.3%
Annotated genes 131
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 13 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources