Scutellaria alpina chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ059196.1 · 4–77 bp · −
psbA · PQ059196.1 · 374–1,432 bp · −
trnK-UUU · PQ059196.1 · 1,674–4,255 bp · −
matK · PQ059196.1 · 1,964–3,490 bp · −
rps16 · PQ059196.1 · 5,157–6,316 bp · −
trnQ-UUG · PQ059196.1 · 7,061–7,132 bp · −
trnS-GCU · PQ059196.1 · 8,261–8,348 bp · −
atpA · PQ059196.1 · 10,152–11,675 bp · −
atpF · PQ059196.1 · 11,757–12,992 bp · −
atpH · PQ059196.1 · 13,353–13,598 bp · −
atpI · PQ059196.1 · 14,574–15,317 bp · −
rps2 · PQ059196.1 · 15,663–16,373 bp · −
rpoC2 · PQ059196.1 · 16,588–20,793 bp · −
rpoC1 · PQ059196.1 · 20,948–23,785 bp · −
rpoB · PQ059196.1 · 23,812–27,024 bp · −
psbM · PQ059196.1 · 30,117–30,221 bp · −
trnD-GUC · PQ059196.1 · 30,747–30,820 bp · −
trnY-GUA · PQ059196.1 · 30,934–31,017 bp · −
trnE-UUC · PQ059196.1 · 31,077–31,149 bp · −
trnS-UGA · PQ059196.1 · 35,768–35,859 bp · −
trnfM-CAU · PQ059196.1 · 36,865–36,938 bp · −
rps14 · PQ059196.1 · 37,093–37,395 bp · −
psaB · PQ059196.1 · 37,524–39,728 bp · −
psaA · PQ059196.1 · 39,754–42,006 bp · −
ycf3 · PQ059196.1 · 42,698–44,640 bp · −
rps4 · PQ059196.1 · 45,885–46,490 bp · −
trnT-UGU · PQ059196.1 · 46,830–46,902 bp · −
ndhJ · PQ059196.1 · 49,158–49,634 bp · −
ndhK · PQ059196.1 · 49,743–50,420 bp · −
ndhC · PQ059196.1 · 50,474–50,836 bp · −
trnV-UAC · PQ059196.1 · 51,822–52,474 bp · −
atpE · PQ059196.1 · 52,929–53,330 bp · −
atpB · PQ059196.1 · 53,327–54,823 bp · −
psbJ · PQ059196.1 · 64,558–64,680 bp · −
psbL · PQ059196.1 · 64,814–65,035 bp · −
psbF · PQ059196.1 · 64,954–65,073 bp · −
psbE · PQ059196.1 · 65,088–65,339 bp · −
trnW-CCA · PQ059196.1 · 66,720–66,793 bp · −
trnP-UGG · PQ059196.1 · 66,963–67,036 bp · −
rpl20 · PQ059196.1 · 68,833–69,219 bp · −
rps12 · PQ059196.1 · 70,001–70,126 bp · −
rps12 · PQ059196.1 · 97,271–98,061 bp · −
clpP · PQ059196.1 · 70,268–72,196 bp · −
psbN · PQ059196.1 · 74,534–74,665 bp · −
rpoA · PQ059196.1 · 78,226–79,026 bp · −
rps11 · PQ059196.1 · 79,098–79,514 bp · −
rpl36 · PQ059196.1 · 79,616–79,729 bp · −
infA · PQ059196.1 · 79,824–80,057 bp · −
rps8 · PQ059196.1 · 80,181–80,591 bp · −
rpl14 · PQ059196.1 · 80,743–81,111 bp · −
rpl16 · PQ059196.1 · 81,238–82,471 bp · −
rps3 · PQ059196.1 · 82,627–83,289 bp · −
rpl22 · PQ059196.1 · 83,291–83,746 bp · −
rps19 · PQ059196.1 · 83,806–84,084 bp · −
rpl2 · PQ059196.1 · 84,139–85,620 bp · −
rpl23 · PQ059196.1 · 85,639–85,920 bp · −
trnI-CAU · PQ059196.1 · 86,080–86,153 bp · −
trnL-CAA · PQ059196.1 · 93,641–93,721 bp · −
ndhB · PQ059196.1 · 94,264–96,421 bp · −
rps7 · PQ059196.1 · 96,750–97,217 bp · −
trnN-GUU · PQ059196.1 · 108,099–108,170 bp · −
ndhF · PQ059196.1 · 109,227–111,488 bp · −
ndhD · PQ059196.1 · 113,852–115,354 bp · −
psaC · PQ059196.1 · 115,482–115,727 bp · −
ndhE · PQ059196.1 · 115,983–116,288 bp · −
ndhG · PQ059196.1 · 116,505–117,035 bp · −
ndhI · PQ059196.1 · 117,402–117,902 bp · −
ndhA · PQ059196.1 · 117,988–120,108 bp · −
ndhH · PQ059196.1 · 120,110–121,291 bp · −
rps15 · PQ059196.1 · 121,388–121,660 bp · −
ycf1 · PQ059196.1 · 121,854–127,478 bp · −
trnR-ACG · PQ059196.1 · 128,317–128,390 bp · −
rrn5 · PQ059196.1 · 128,625–128,745 bp · −
rrn4.5 · PQ059196.1 · 128,993–129,095 bp · −
rrn23 · PQ059196.1 · 129,194–132,005 bp · −
trnA-UGC · PQ059196.1 · 132,175–133,062 bp · −
trnI-GAU · PQ059196.1 · 133,127–134,147 bp · −
ycf68 · PQ059196.1 · 133,699–133,992 bp · −
rrn16 · PQ059196.1 · 134,446–135,936 bp · −
trnV-GAC · PQ059196.1 · 136,163–136,234 bp · −
ycf15 · PQ059196.1 · 142,486–142,734 bp · −
ycf2 · PQ059196.1 · 142,825–149,625 bp · −
psbK · PQ059196.1 · 7,457–7,642 bp · +
psbI · PQ059196.1 · 8,032–8,142 bp · +
trnG-UCC · PQ059196.1 · 9,053–9,809 bp · +
trnR-UCU · PQ059196.1 · 9,984–10,055 bp · +
trnC-GCA · PQ059196.1 · 28,185–28,255 bp · +
petN · PQ059196.1 · 28,972–29,061 bp · +
trnT-GGU · PQ059196.1 · 31,725–31,796 bp · +
psbD · PQ059196.1 · 33,102–34,163 bp · +
psbC · PQ059196.1 · 34,111–35,532 bp · +
psbZ · PQ059196.1 · 36,175–36,363 bp · +
trnG-GCC · PQ059196.1 · 36,646–36,716 bp · +
trnS-GGA · PQ059196.1 · 45,523–45,609 bp · +
trnL-UAA · PQ059196.1 · 47,578–48,137 bp · +
trnF-GAA · PQ059196.1 · 48,437–48,509 bp · +
trnM-CAU · PQ059196.1 · 52,663–52,735 bp · +
rbcL · PQ059196.1 · 55,574–57,037 bp · +
accD · PQ059196.1 · 57,751–59,229 bp · +
psaI · PQ059196.1 · 59,936–60,046 bp · +
ycf4 · PQ059196.1 · 60,482–61,036 bp · +
cemA · PQ059196.1 · 61,786–62,385 bp · +
petA · PQ059196.1 · 62,592–63,554 bp · +
petL · PQ059196.1 · 66,217–66,312 bp · +
petG · PQ059196.1 · 66,488–66,601 bp · +
psaJ · PQ059196.1 · 67,245–67,442 bp · +
rpl33 · PQ059196.1 · 67,918–68,118 bp · +
rps18 · PQ059196.1 · 68,293–68,598 bp · +
rps12 · PQ059196.1 · 137,806–138,596 bp · +
psbB · PQ059196.1 · 72,648–74,174 bp · +
psbT · PQ059196.1 · 74,366–74,473 bp · +
psbH · PQ059196.1 · 74,769–74,990 bp · +
petB · PQ059196.1 · 75,115–76,482 bp · +
petD · PQ059196.1 · 76,665–77,871 bp · +
ycf2 · PQ059196.1 · 86,242–93,042 bp · +
ycf15 · PQ059196.1 · 93,133–93,381 bp · +
trnV-GAC · PQ059196.1 · 99,633–99,704 bp · +
rrn16 · PQ059196.1 · 99,931–101,421 bp · +
trnI-GAU · PQ059196.1 · 101,720–102,740 bp · +
trnA-UGC · PQ059196.1 · 102,805–103,692 bp · +
rrn23 · PQ059196.1 · 103,862–106,673 bp · +
rrn4.5 · PQ059196.1 · 106,772–106,874 bp · +
rrn5 · PQ059196.1 · 107,122–107,242 bp · +
trnR-ACG · PQ059196.1 · 107,477–107,550 bp · +
rpl32 · PQ059196.1 · 111,815–111,991 bp · +
trnL-UAG · PQ059196.1 · 112,441–112,520 bp · +
ccsA · PQ059196.1 · 112,622–113,596 bp · +
trnN-GUU · PQ059196.1 · 127,697–127,768 bp · +
rps7 · PQ059196.1 · 138,650–139,117 bp · +
ndhB · PQ059196.1 · 139,446–141,603 bp · +
trnL-CAA · PQ059196.1 · 142,146–142,226 bp · +
trnI-CAU · PQ059196.1 · 149,714–149,787 bp · +
rpl23 · PQ059196.1 · 149,947–150,228 bp · +
rpl2 · PQ059196.1 · 150,247–151,728 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria alpina
ANNOTATED PLASTOME
PQ059196.1
151,828 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37957 75914 113871 151828 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU ycf68 rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 4 77 74 Locate
psbA gene − 374 1432 1059 Locate
trnK-UUU gene − 1674 4255 2582 Locate
matK gene − 1964 3490 1527 Locate
rps16 gene − 5157 6316 1160 Locate
trnQ-UUG gene − 7061 7132 72 Locate
psbK gene + 7457 7642 186 Locate
psbI gene + 8032 8142 111 Locate
trnS-GCU gene − 8261 8348 88 Locate
trnG-UCC gene + 9053 9809 757 Locate
trnR-UCU gene + 9984 10055 72 Locate
atpA gene − 10152 11675 1524 Locate
atpF gene − 11757 12992 1236 Locate
atpH gene − 13353 13598 246 Locate
atpI gene − 14574 15317 744 Locate
rps2 gene − 15663 16373 711 Locate
rpoC2 gene − 16588 20793 4206 Locate
rpoC1 gene − 20948 23785 2838 Locate
rpoB gene − 23812 27024 3213 Locate
trnC-GCA gene + 28185 28255 71 Locate
petN gene + 28972 29061 90 Locate
psbM gene − 30117 30221 105 Locate
trnD-GUC gene − 30747 30820 74 Locate
trnY-GUA gene − 30934 31017 84 Locate
trnE-UUC gene − 31077 31149 73 Locate
trnT-GGU gene + 31725 31796 72 Locate
psbD gene + 33102 34163 1062 Locate
psbC gene + 34111 35532 1422 Locate
trnS-UGA gene − 35768 35859 92 Locate
psbZ gene + 36175 36363 189 Locate
trnG-GCC gene + 36646 36716 71 Locate
trnfM-CAU gene − 36865 36938 74 Locate
rps14 gene − 37093 37395 303 Locate
psaB gene − 37524 39728 2205 Locate
psaA gene − 39754 42006 2253 Locate
ycf3 gene − 42698 44640 1943 Locate
trnS-GGA gene + 45523 45609 87 Locate
rps4 gene − 45885 46490 606 Locate
trnT-UGU gene − 46830 46902 73 Locate
trnL-UAA gene + 47578 48137 560 Locate
trnF-GAA gene + 48437 48509 73 Locate
ndhJ gene − 49158 49634 477 Locate
ndhK gene − 49743 50420 678 Locate
ndhC gene − 50474 50836 363 Locate
trnV-UAC gene − 51822 52474 653 Locate
trnM-CAU gene + 52663 52735 73 Locate
atpE gene − 52929 53330 402 Locate
atpB gene − 53327 54823 1497 Locate
rbcL gene + 55574 57037 1464 Locate
accD gene + 57751 59229 1479 Locate
psaI gene + 59936 60046 111 Locate
ycf4 gene + 60482 61036 555 Locate
cemA gene + 61786 62385 600 Locate
petA gene + 62592 63554 963 Locate
psbJ gene − 64558 64680 123 Locate
psbL gene − 64814 65035 222 Locate
psbF gene − 64954 65073 120 Locate
psbE gene − 65088 65339 252 Locate
petL gene + 66217 66312 96 Locate
petG gene + 66488 66601 114 Locate
trnW-CCA gene − 66720 66793 74 Locate
trnP-UGG gene − 66963 67036 74 Locate
psaJ gene + 67245 67442 198 Locate
rpl33 gene + 67918 68118 201 Locate
rps18 gene + 68293 68598 306 Locate
rpl20 gene − 68833 69219 387 Locate
rps12 gene − 70001 70126 126 Locate
clpP gene − 70268 72196 1929 Locate
psbB gene + 72648 74174 1527 Locate
psbT gene + 74366 74473 108 Locate
psbN gene − 74534 74665 132 Locate
psbH gene + 74769 74990 222 Locate
petB gene + 75115 76482 1368 Locate
petD gene + 76665 77871 1207 Locate
rpoA gene − 78226 79026 801 Locate
rps11 gene − 79098 79514 417 Locate
rpl36 gene − 79616 79729 114 Locate
infA gene − 79824 80057 234 Locate
rps8 gene − 80181 80591 411 Locate
rpl14 gene − 80743 81111 369 Locate
rpl16 gene − 81238 82471 1234 Locate
rps3 gene − 82627 83289 663 Locate
rpl22 gene − 83291 83746 456 Locate
rps19 gene − 83806 84084 279 Locate
rpl2 gene − 84139 85620 1482 Locate
rpl23 gene − 85639 85920 282 Locate
trnI-CAU gene − 86080 86153 74 Locate
ycf2 gene + 86242 93042 6801 Locate
ycf15 gene + 93133 93381 249 Locate
trnL-CAA gene − 93641 93721 81 Locate
ndhB gene − 94264 96421 2158 Locate
rps7 gene − 96750 97217 468 Locate
rps12 gene − 97271 98061 791 Locate
trnV-GAC gene + 99633 99704 72 Locate
rrn16 gene + 99931 101421 1491 Locate
trnI-GAU gene + 101720 102740 1021 Locate
trnA-UGC gene + 102805 103692 888 Locate
rrn23 gene + 103862 106673 2812 Locate
rrn4.5 gene + 106772 106874 103 Locate
rrn5 gene + 107122 107242 121 Locate
trnR-ACG gene + 107477 107550 74 Locate
trnN-GUU gene − 108099 108170 72 Locate
ndhF gene − 109227 111488 2262 Locate
rpl32 gene + 111815 111991 177 Locate
trnL-UAG gene + 112441 112520 80 Locate
ccsA gene + 112622 113596 975 Locate
ndhD gene − 113852 115354 1503 Locate
psaC gene − 115482 115727 246 Locate
ndhE gene − 115983 116288 306 Locate
ndhG gene − 116505 117035 531 Locate
ndhI gene − 117402 117902 501 Locate
ndhA gene − 117988 120108 2121 Locate
ndhH gene − 120110 121291 1182 Locate
rps15 gene − 121388 121660 273 Locate
ycf1 gene − 121854 127478 5625 Locate
trnN-GUU gene + 127697 127768 72 Locate
trnR-ACG gene − 128317 128390 74 Locate
rrn5 gene − 128625 128745 121 Locate
rrn4.5 gene − 128993 129095 103 Locate
rrn23 gene − 129194 132005 2812 Locate
trnA-UGC gene − 132175 133062 888 Locate
trnI-GAU gene − 133127 134147 1021 Locate
ycf68 gene − 133699 133992 294 Locate
rrn16 gene − 134446 135936 1491 Locate
trnV-GAC gene − 136163 136234 72 Locate
rps12 gene + 137806 138596 791 Locate
rps7 gene + 138650 139117 468 Locate
ndhB gene + 139446 141603 2158 Locate
trnL-CAA gene + 142146 142226 81 Locate
ycf15 gene − 142486 142734 249 Locate
ycf2 gene − 142825 149625 6801 Locate
trnI-CAU gene + 149714 149787 74 Locate
rpl23 gene + 149947 150228 282 Locate
rpl2 gene + 150247 151728 1482 Locate
Status Available
Accession PQ059196.1
Length 151,828 bp
GC content 38.3%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources