Scutellaria altaica chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ075892.1 · 4–77 bp · −
psbA · PQ075892.1 · 374–1,432 bp · −
trnK-UUU · PQ075892.1 · 1,674–4,255 bp · −
matK · PQ075892.1 · 1,964–3,490 bp · −
rps16 · PQ075892.1 · 5,146–6,303 bp · −
trnQ-UUG · PQ075892.1 · 7,048–7,119 bp · −
trnS-GCU · PQ075892.1 · 8,250–8,337 bp · −
atpA · PQ075892.1 · 10,133–11,656 bp · −
atpF · PQ075892.1 · 11,738–12,966 bp · −
atpH · PQ075892.1 · 13,324–13,569 bp · −
atpI · PQ075892.1 · 14,557–15,300 bp · −
rps2 · PQ075892.1 · 15,646–16,356 bp · −
rpoC2 · PQ075892.1 · 16,571–20,776 bp · −
rpoC1 · PQ075892.1 · 20,931–23,767 bp · −
rpoB · PQ075892.1 · 23,794–27,006 bp · −
psbM · PQ075892.1 · 30,023–30,127 bp · −
trnD-GUC · PQ075892.1 · 30,653–30,726 bp · −
trnY-GUA · PQ075892.1 · 30,840–30,923 bp · −
trnE-UUC · PQ075892.1 · 30,983–31,055 bp · −
trnS-UGA · PQ075892.1 · 35,673–35,764 bp · −
trnfM-CAU · PQ075892.1 · 36,758–36,831 bp · −
rps14 · PQ075892.1 · 36,986–37,288 bp · −
psaB · PQ075892.1 · 37,417–39,621 bp · −
psaA · PQ075892.1 · 39,647–41,899 bp · −
ycf3 · PQ075892.1 · 42,586–44,508 bp · −
rps4 · PQ075892.1 · 45,754–46,359 bp · −
trnT-UGU · PQ075892.1 · 46,704–46,776 bp · −
ndhJ · PQ075892.1 · 49,032–49,508 bp · −
ndhK · PQ075892.1 · 49,617–50,294 bp · −
ndhC · PQ075892.1 · 50,348–50,710 bp · −
trnV-UAC · PQ075892.1 · 51,692–52,344 bp · −
atpE · PQ075892.1 · 52,799–53,200 bp · −
atpB · PQ075892.1 · 53,197–54,693 bp · −
psbJ · PQ075892.1 · 64,429–64,551 bp · −
psbL · PQ075892.1 · 64,685–64,906 bp · −
psbF · PQ075892.1 · 64,825–64,944 bp · −
psbE · PQ075892.1 · 64,959–65,210 bp · −
trnW-CCA · PQ075892.1 · 66,591–66,664 bp · −
trnP-UGG · PQ075892.1 · 66,834–66,907 bp · −
rpl20 · PQ075892.1 · 68,704–69,090 bp · −
rps12 · PQ075892.1 · 69,874–69,999 bp · −
rps12 · PQ075892.1 · 97,145–97,935 bp · −
clpP · PQ075892.1 · 70,141–72,069 bp · −
psbN · PQ075892.1 · 74,407–74,538 bp · −
rpoA · PQ075892.1 · 78,099–78,899 bp · −
rps11 · PQ075892.1 · 78,971–79,387 bp · −
rpl36 · PQ075892.1 · 79,489–79,602 bp · −
infA · PQ075892.1 · 79,697–79,930 bp · −
rps8 · PQ075892.1 · 80,054–80,464 bp · −
rpl14 · PQ075892.1 · 80,617–80,985 bp · −
rpl16 · PQ075892.1 · 81,112–82,345 bp · −
rps3 · PQ075892.1 · 82,501–83,163 bp · −
rpl22 · PQ075892.1 · 83,165–83,620 bp · −
rps19 · PQ075892.1 · 83,680–83,958 bp · −
rpl2 · PQ075892.1 · 84,013–85,494 bp · −
rpl23 · PQ075892.1 · 85,513–85,794 bp · −
trnI-CAU · PQ075892.1 · 85,954–86,027 bp · −
trnL-CAA · PQ075892.1 · 93,515–93,595 bp · −
ndhB · PQ075892.1 · 94,138–96,295 bp · −
rps7 · PQ075892.1 · 96,624–97,091 bp · −
trnN-GUU · PQ075892.1 · 107,973–108,044 bp · −
ndhF · PQ075892.1 · 109,101–111,362 bp · −
ndhD · PQ075892.1 · 113,723–115,252 bp · −
psaC · PQ075892.1 · 115,353–115,598 bp · −
ndhE · PQ075892.1 · 115,854–116,159 bp · −
ndhG · PQ075892.1 · 116,376–116,906 bp · −
ndhI · PQ075892.1 · 117,273–117,773 bp · −
ndhA · PQ075892.1 · 117,859–119,980 bp · −
ndhH · PQ075892.1 · 119,982–121,193 bp · −
rps15 · PQ075892.1 · 121,260–121,532 bp · −
ycf1 · PQ075892.1 · 121,730–127,366 bp · −
trnR-ACG · PQ075892.1 · 128,205–128,278 bp · −
rrn5 · PQ075892.1 · 128,513–128,633 bp · −
rrn4.5 · PQ075892.1 · 128,881–128,983 bp · −
rrn23 · PQ075892.1 · 129,082–131,893 bp · −
trnA-UGC · PQ075892.1 · 132,063–132,950 bp · −
trnI-GAU · PQ075892.1 · 133,015–134,035 bp · −
ycf68 · PQ075892.1 · 133,587–133,880 bp · −
rrn16 · PQ075892.1 · 134,334–135,824 bp · −
trnV-GAC · PQ075892.1 · 136,051–136,122 bp · −
ycf15 · PQ075892.1 · 142,374–142,571 bp · −
ycf2 · PQ075892.1 · 142,713–149,513 bp · −
psbK · PQ075892.1 · 7,444–7,629 bp · +
psbI · PQ075892.1 · 8,019–8,129 bp · +
trnG-UCC · PQ075892.1 · 9,034–9,790 bp · +
trnR-UCU · PQ075892.1 · 9,965–10,036 bp · +
trnC-GCA · PQ075892.1 · 28,167–28,237 bp · +
petN · PQ075892.1 · 28,956–29,045 bp · +
trnT-GGU · PQ075892.1 · 31,631–31,702 bp · +
psbD · PQ075892.1 · 33,007–34,068 bp · +
psbC · PQ075892.1 · 34,016–35,437 bp · +
psbZ · PQ075892.1 · 36,080–36,268 bp · +
trnG-GCC · PQ075892.1 · 36,543–36,613 bp · +
trnS-GGA · PQ075892.1 · 45,392–45,478 bp · +
trnL-UAA · PQ075892.1 · 47,452–48,011 bp · +
trnF-GAA · PQ075892.1 · 48,312–48,384 bp · +
trnM-CAU · PQ075892.1 · 52,533–52,605 bp · +
rbcL · PQ075892.1 · 55,444–56,907 bp · +
accD · PQ075892.1 · 57,621–59,099 bp · +
psaI · PQ075892.1 · 59,806–59,916 bp · +
ycf4 · PQ075892.1 · 60,350–60,904 bp · +
cemA · PQ075892.1 · 61,653–62,252 bp · +
petA · PQ075892.1 · 62,459–63,421 bp · +
petL · PQ075892.1 · 66,088–66,183 bp · +
petG · PQ075892.1 · 66,359–66,472 bp · +
psaJ · PQ075892.1 · 67,179–67,313 bp · +
rpl33 · PQ075892.1 · 67,789–67,989 bp · +
rps18 · PQ075892.1 · 68,164–68,469 bp · +
rps12 · PQ075892.1 · 137,694–138,484 bp · +
psbB · PQ075892.1 · 72,521–74,047 bp · +
psbT · PQ075892.1 · 74,239–74,346 bp · +
psbH · PQ075892.1 · 74,642–74,863 bp · +
petB · PQ075892.1 · 74,988–76,355 bp · +
petD · PQ075892.1 · 76,538–77,744 bp · +
ycf2 · PQ075892.1 · 86,116–92,916 bp · +
ycf15 · PQ075892.1 · 93,058–93,255 bp · +
trnV-GAC · PQ075892.1 · 99,507–99,578 bp · +
rrn16 · PQ075892.1 · 99,805–101,295 bp · +
trnI-GAU · PQ075892.1 · 101,594–102,614 bp · +
trnA-UGC · PQ075892.1 · 102,679–103,566 bp · +
rrn23 · PQ075892.1 · 103,736–106,547 bp · +
rrn4.5 · PQ075892.1 · 106,646–106,748 bp · +
rrn5 · PQ075892.1 · 106,996–107,116 bp · +
trnR-ACG · PQ075892.1 · 107,351–107,424 bp · +
rpl32 · PQ075892.1 · 111,689–111,865 bp · +
trnL-UAG · PQ075892.1 · 112,312–112,391 bp · +
ccsA · PQ075892.1 · 112,492–113,466 bp · +
trnN-GUU · PQ075892.1 · 127,585–127,656 bp · +
rps7 · PQ075892.1 · 138,538–139,005 bp · +
ndhB · PQ075892.1 · 139,334–141,491 bp · +
trnL-CAA · PQ075892.1 · 142,034–142,114 bp · +
trnI-CAU · PQ075892.1 · 149,602–149,675 bp · +
rpl23 · PQ075892.1 · 149,835–150,116 bp · +
rpl2 · PQ075892.1 · 150,135–151,616 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria altaica
ANNOTATED PLASTOME
PQ075892.1
151,716 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37929 75858 113787 151716 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU ycf68 rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 4 77 74 Locate
psbA gene − 374 1432 1059 Locate
trnK-UUU gene − 1674 4255 2582 Locate
matK gene − 1964 3490 1527 Locate
rps16 gene − 5146 6303 1158 Locate
trnQ-UUG gene − 7048 7119 72 Locate
psbK gene + 7444 7629 186 Locate
psbI gene + 8019 8129 111 Locate
trnS-GCU gene − 8250 8337 88 Locate
trnG-UCC gene + 9034 9790 757 Locate
trnR-UCU gene + 9965 10036 72 Locate
atpA gene − 10133 11656 1524 Locate
atpF gene − 11738 12966 1229 Locate
atpH gene − 13324 13569 246 Locate
atpI gene − 14557 15300 744 Locate
rps2 gene − 15646 16356 711 Locate
rpoC2 gene − 16571 20776 4206 Locate
rpoC1 gene − 20931 23767 2837 Locate
rpoB gene − 23794 27006 3213 Locate
trnC-GCA gene + 28167 28237 71 Locate
petN gene + 28956 29045 90 Locate
psbM gene − 30023 30127 105 Locate
trnD-GUC gene − 30653 30726 74 Locate
trnY-GUA gene − 30840 30923 84 Locate
trnE-UUC gene − 30983 31055 73 Locate
trnT-GGU gene + 31631 31702 72 Locate
psbD gene + 33007 34068 1062 Locate
psbC gene + 34016 35437 1422 Locate
trnS-UGA gene − 35673 35764 92 Locate
psbZ gene + 36080 36268 189 Locate
trnG-GCC gene + 36543 36613 71 Locate
trnfM-CAU gene − 36758 36831 74 Locate
rps14 gene − 36986 37288 303 Locate
psaB gene − 37417 39621 2205 Locate
psaA gene − 39647 41899 2253 Locate
ycf3 gene − 42586 44508 1923 Locate
trnS-GGA gene + 45392 45478 87 Locate
rps4 gene − 45754 46359 606 Locate
trnT-UGU gene − 46704 46776 73 Locate
trnL-UAA gene + 47452 48011 560 Locate
trnF-GAA gene + 48312 48384 73 Locate
ndhJ gene − 49032 49508 477 Locate
ndhK gene − 49617 50294 678 Locate
ndhC gene − 50348 50710 363 Locate
trnV-UAC gene − 51692 52344 653 Locate
trnM-CAU gene + 52533 52605 73 Locate
atpE gene − 52799 53200 402 Locate
atpB gene − 53197 54693 1497 Locate
rbcL gene + 55444 56907 1464 Locate
accD gene + 57621 59099 1479 Locate
psaI gene + 59806 59916 111 Locate
ycf4 gene + 60350 60904 555 Locate
cemA gene + 61653 62252 600 Locate
petA gene + 62459 63421 963 Locate
psbJ gene − 64429 64551 123 Locate
psbL gene − 64685 64906 222 Locate
psbF gene − 64825 64944 120 Locate
psbE gene − 64959 65210 252 Locate
petL gene + 66088 66183 96 Locate
petG gene + 66359 66472 114 Locate
trnW-CCA gene − 66591 66664 74 Locate
trnP-UGG gene − 66834 66907 74 Locate
psaJ gene + 67179 67313 135 Locate
rpl33 gene + 67789 67989 201 Locate
rps18 gene + 68164 68469 306 Locate
rpl20 gene − 68704 69090 387 Locate
rps12 gene − 69874 69999 126 Locate
clpP gene − 70141 72069 1929 Locate
psbB gene + 72521 74047 1527 Locate
psbT gene + 74239 74346 108 Locate
psbN gene − 74407 74538 132 Locate
psbH gene + 74642 74863 222 Locate
petB gene + 74988 76355 1368 Locate
petD gene + 76538 77744 1207 Locate
rpoA gene − 78099 78899 801 Locate
rps11 gene − 78971 79387 417 Locate
rpl36 gene − 79489 79602 114 Locate
infA gene − 79697 79930 234 Locate
rps8 gene − 80054 80464 411 Locate
rpl14 gene − 80617 80985 369 Locate
rpl16 gene − 81112 82345 1234 Locate
rps3 gene − 82501 83163 663 Locate
rpl22 gene − 83165 83620 456 Locate
rps19 gene − 83680 83958 279 Locate
rpl2 gene − 84013 85494 1482 Locate
rpl23 gene − 85513 85794 282 Locate
trnI-CAU gene − 85954 86027 74 Locate
ycf2 gene + 86116 92916 6801 Locate
ycf15 gene + 93058 93255 198 Locate
trnL-CAA gene − 93515 93595 81 Locate
ndhB gene − 94138 96295 2158 Locate
rps7 gene − 96624 97091 468 Locate
rps12 gene − 97145 97935 791 Locate
trnV-GAC gene + 99507 99578 72 Locate
rrn16 gene + 99805 101295 1491 Locate
trnI-GAU gene + 101594 102614 1021 Locate
trnA-UGC gene + 102679 103566 888 Locate
rrn23 gene + 103736 106547 2812 Locate
rrn4.5 gene + 106646 106748 103 Locate
rrn5 gene + 106996 107116 121 Locate
trnR-ACG gene + 107351 107424 74 Locate
trnN-GUU gene − 107973 108044 72 Locate
ndhF gene − 109101 111362 2262 Locate
rpl32 gene + 111689 111865 177 Locate
trnL-UAG gene + 112312 112391 80 Locate
ccsA gene + 112492 113466 975 Locate
ndhD gene − 113723 115252 1530 Locate
psaC gene − 115353 115598 246 Locate
ndhE gene − 115854 116159 306 Locate
ndhG gene − 116376 116906 531 Locate
ndhI gene − 117273 117773 501 Locate
ndhA gene − 117859 119980 2122 Locate
ndhH gene − 119982 121193 1212 Locate
rps15 gene − 121260 121532 273 Locate
ycf1 gene − 121730 127366 5637 Locate
trnN-GUU gene + 127585 127656 72 Locate
trnR-ACG gene − 128205 128278 74 Locate
rrn5 gene − 128513 128633 121 Locate
rrn4.5 gene − 128881 128983 103 Locate
rrn23 gene − 129082 131893 2812 Locate
trnA-UGC gene − 132063 132950 888 Locate
trnI-GAU gene − 133015 134035 1021 Locate
ycf68 gene − 133587 133880 294 Locate
rrn16 gene − 134334 135824 1491 Locate
trnV-GAC gene − 136051 136122 72 Locate
rps12 gene + 137694 138484 791 Locate
rps7 gene + 138538 139005 468 Locate
ndhB gene + 139334 141491 2158 Locate
trnL-CAA gene + 142034 142114 81 Locate
ycf15 gene − 142374 142571 198 Locate
ycf2 gene − 142713 149513 6801 Locate
trnI-CAU gene + 149602 149675 74 Locate
rpl23 gene + 149835 150116 282 Locate
rpl2 gene + 150135 151616 1482 Locate
Status Available
Accession PQ075892.1
Length 151,716 bp
GC content 38.3%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources