Scutellaria altamaha chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
SSC
IR
trnH-GUG · MW420957.1 · 2–75 bp · −
psbA · MW420957.1 · 379–1,437 bp · −
trnK-UUU · MW420957.1 · 1,684–4,270 bp · −
matK · MW420957.1 · 1,981–3,516 bp · −
rps16 · MW420957.1 · 5,171–6,336 bp · −
trnQ-UUC · MW420957.1 · 7,429–7,500 bp · −
trnS-GCU · MW420957.1 · 8,623–8,710 bp · −
atpA · MW420957.1 · 10,494–12,017 bp · −
atpF · MW420957.1 · 12,090–13,323 bp · −
atpH · MW420957.1 · 13,686–13,931 bp · −
atpI · MW420957.1 · 14,919–15,662 bp · −
rps2 · MW420957.1 · 16,002–16,712 bp · −
rpoC2 · MW420957.1 · 16,935–21,128 bp · −
rpoC1 · MW420957.1 · 21,283–24,091 bp · −
rpoB · MW420957.1 · 24,118–27,330 bp · −
psbM · MW420957.1 · 30,359–30,463 bp · −
trnD-GUC · MW420957.1 · 30,993–31,066 bp · −
trnY-GUA · MW420957.1 · 31,186–31,269 bp · −
trnE-UUC · MW420957.1 · 31,329–31,401 bp · −
trnS-UCA · MW420957.1 · 36,018–36,110 bp · −
trnfM-CAU · MW420957.1 · 37,118–37,191 bp · −
rps14 · MW420957.1 · 37,341–37,643 bp · −
psaB · MW420957.1 · 37,771–39,975 bp · −
psaA · MW420957.1 · 40,000–42,252 bp · −
ycf3 · MW420957.1 · 42,948–44,859 bp · −
rps4 · MW420957.1 · 45,570–46,175 bp · −
trnT-UGU · MW420957.1 · 46,515–46,587 bp · −
ndhJ · MW420957.1 · 48,804–49,280 bp · −
ndhK · MW420957.1 · 49,388–50,065 bp · −
ndhC · MW420957.1 · 50,118–50,480 bp · −
trnV-UAC · MW420957.1 · 51,482–52,134 bp · −
atpE · MW420957.1 · 52,598–52,999 bp · −
atpB · MW420957.1 · 52,996–54,492 bp · −
pabJ · MW420957.1 · 64,231–64,353 bp · −
psbL · MW420957.1 · 64,488–64,604 bp · −
psbF · MW420957.1 · 64,628–64,747 bp · −
psbE · MW420957.1 · 64,762–65,013 bp · −
trnW-CCA · MW420957.1 · 66,424–66,497 bp · −
trnP-UGG · MW420957.1 · 66,661–66,734 bp · −
rpl20 · MW420957.1 · 68,524–68,910 bp · −
rps12 · MW420957.1 · 69,696–69,821 bp · −
rps12 · MW420957.1 · 97,008–97,798 bp · −
clpP · MW420957.1 · 69,963–71,892 bp · −
psbN · MW420957.1 · 74,237–74,368 bp · −
rpoA · MW420957.1 · 77,745–78,758 bp · −
rps11 · MW420957.1 · 78,830–79,246 bp · −
rpl36 · MW420957.1 · 79,348–79,461 bp · −
infA · MW420957.1 · 79,557–79,790 bp · −
rps8 · MW420957.1 · 79,911–80,321 bp · −
rpl14 · MW420957.1 · 80,480–80,848 bp · −
rpl16 · MW420957.1 · 80,975–82,218 bp · −
rps3 · MW420957.1 · 82,373–83,035 bp · −
rpl22 · MW420957.1 · 83,037–83,492 bp · −
rps19 · MW420957.1 · 83,557–83,835 bp · −
rpl2 · MW420957.1 · 83,892–85,374 bp · −
rpl23 · MW420957.1 · 85,393–85,674 bp · −
trnI-CAU · MW420957.1 · 85,834–85,907 bp · −
trnL-CAA · MW420957.1 · 93,387–93,467 bp · −
ndhB · MW420957.1 · 94,010–96,212 bp · −
rps7 · MW420957.1 · 96,487–96,954 bp · −
ndhF · MW420957.1 · 108,965–111,205 bp · −
ndhD · MW420957.1 · 113,720–115,240 bp · −
psaC · MW420957.1 · 115,349–115,594 bp · −
ndhE · MW420957.1 · 115,846–116,151 bp · −
ndhG · MW420957.1 · 116,382–116,912 bp · −
ndhI · MW420957.1 · 117,277–117,777 bp · −
ndhA · MW420957.1 · 117,858–119,955 bp · −
ndhH · MW420957.1 · 119,957–121,138 bp · −
rps15 · MW420957.1 · 121,235–121,507 bp · −
ycf1 · MW420957.1 · 121,782–127,097 bp · −
trnR-ACG · MW420957.1 · 128,046–128,119 bp · −
rrn5 · MW420957.1 · 128,344–128,464 bp · −
rrn4.5 · MW420957.1 · 128,712–128,814 bp · −
rrn23 · MW420957.1 · 128,913–131,725 bp · −
trnA-UGC · MW420957.1 · 131,888–132,774 bp · −
trnI-GAU · MW420957.1 · 132,840–133,859 bp · −
rrn16 · MW420957.1 · 134,158–135,648 bp · −
trnV-GAC · MW420957.1 · 135,876–135,947 bp · −
ycf15 · MW420957.1 · 142,189–142,386 bp · −
ycf2 · MW420957.1 · 142,528–149,319 bp · −
psbK · MW420957.1 · 7,833–8,018 bp · +
psbI · MW420957.1 · 8,403–8,513 bp · +
trnG-CGA · MW420957.1 · 9,384–10,145 bp · +
trnR-UCU · MW420957.1 · 10,320–10,391 bp · +
trnC-GCA · MW420957.1 · 28,487–28,557 bp · +
petN · MW420957.1 · 29,269–29,358 bp · +
trnT-GGU · MW420957.1 · 31,985–32,056 bp · +
psbD · MW420957.1 · 33,350–34,411 bp · +
psbC · MW420957.1 · 34,359–35,780 bp · +
psbZ · MW420957.1 · 36,430–36,618 bp · +
trnG-GCC · MW420957.1 · 36,894–36,964 bp · +
trnS-GGA · MW420957.1 · 45,200–45,286 bp · +
trnL-UAA · MW420957.1 · 47,219–47,784 bp · +
trnF-GAA · MW420957.1 · 48,080–48,152 bp · +
trnM-CAU · MW420957.1 · 52,315–52,387 bp · +
rbcL · MW420957.1 · 55,259–56,701 bp · +
accD · MW420957.1 · 57,421–58,893 bp · +
psaI · MW420957.1 · 59,588–59,698 bp · +
ycf4 · MW420957.1 · 60,125–60,679 bp · +
cemA · MW420957.1 · 61,360–62,019 bp · +
petA · MW420957.1 · 62,226–63,188 bp · +
petL · MW420957.1 · 65,921–66,016 bp · +
petG · MW420957.1 · 66,192–66,305 bp · +
psbJ · MW420957.1 · 67,003–67,137 bp · +
rpl33 · MW420957.1 · 67,609–67,809 bp · +
rps18 · MW420957.1 · 67,983–68,288 bp · +
rps12 · MW420957.1 · 137,517–138,307 bp · +
psbB · MW420957.1 · 72,344–73,870 bp · +
psbT · MW420957.1 · 74,062–74,163 bp · +
psbH · MW420957.1 · 74,472–74,693 bp · +
petB · MW420957.1 · 74,818–76,188 bp · +
petD · MW420957.1 · 76,377–77,582 bp · +
ycf2 · MW420957.1 · 85,996–92,787 bp · +
ycf15 · MW420957.1 · 92,929–93,126 bp · +
trnV-GAC · MW420957.1 · 99,368–99,439 bp · +
rrn16 · MW420957.1 · 99,667–101,157 bp · +
trnI-GAU · MW420957.1 · 101,456–102,475 bp · +
trnA-UGC · MW420957.1 · 102,541–103,427 bp · +
rrn23 · MW420957.1 · 103,590–106,402 bp · +
rrn4.5 · MW420957.1 · 106,501–106,603 bp · +
rrn5 · MW420957.1 · 106,851–106,971 bp · +
trnR-ACG · MW420957.1 · 107,196–107,269 bp · +
trnN-GUU · MW420957.1 · 107,817–107,888 bp · +
rpl32 · MW420957.1 · 111,728–111,904 bp · +
trnL-UAG · MW420957.1 · 112,338–112,417 bp · +
ccsA · MW420957.1 · 112,511–113,485 bp · +
trnN-GUU · MW420957.1 · 127,427–127,498 bp · +
rps7 · MW420957.1 · 138,361–138,828 bp · +
ndhB · MW420957.1 · 139,103–141,305 bp · +
trnL-CAA · MW420957.1 · 141,848–141,928 bp · +
trnI-CAU · MW420957.1 · 149,408–149,481 bp · +
rpl23 · MW420957.1 · 149,641–149,922 bp · +
rpl2 · MW420957.1 · 149,941–151,423 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria altamaha
ANNOTATED PLASTOME
MW420957.1
151,521 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37880 75760 113641 151521 bp
Forward strand 5′ → 3′
psbK psbI trnG-CGA trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psbJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG trnN-GUU rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUC trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UCA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB pabJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 2 75 74 Locate
psbA gene − 379 1437 1059 Locate
trnK-UUU gene − 1684 4270 2587 Locate
matK gene − 1981 3516 1536 Locate
rps16 gene − 5171 6336 1166 Locate
trnQ-UUC gene − 7429 7500 72 Locate
psbK gene + 7833 8018 186 Locate
psbI gene + 8403 8513 111 Locate
trnS-GCU gene − 8623 8710 88 Locate
trnG-CGA gene + 9384 10145 762 Locate
trnR-UCU gene + 10320 10391 72 Locate
atpA gene − 10494 12017 1524 Locate
atpF gene − 12090 13323 1234 Locate
atpH gene − 13686 13931 246 Locate
atpI gene − 14919 15662 744 Locate
rps2 gene − 16002 16712 711 Locate
rpoC2 gene − 16935 21128 4194 Locate
rpoC1 gene − 21283 24091 2809 Locate
rpoB gene − 24118 27330 3213 Locate
trnC-GCA gene + 28487 28557 71 Locate
petN gene + 29269 29358 90 Locate
psbM gene − 30359 30463 105 Locate
trnD-GUC gene − 30993 31066 74 Locate
trnY-GUA gene − 31186 31269 84 Locate
trnE-UUC gene − 31329 31401 73 Locate
trnT-GGU gene + 31985 32056 72 Locate
psbD gene + 33350 34411 1062 Locate
psbC gene + 34359 35780 1422 Locate
trnS-UCA gene − 36018 36110 93 Locate
psbZ gene + 36430 36618 189 Locate
trnG-GCC gene + 36894 36964 71 Locate
trnfM-CAU gene − 37118 37191 74 Locate
rps14 gene − 37341 37643 303 Locate
psaB gene − 37771 39975 2205 Locate
psaA gene − 40000 42252 2253 Locate
ycf3 gene − 42948 44859 1912 Locate
trnS-GGA gene + 45200 45286 87 Locate
rps4 gene − 45570 46175 606 Locate
trnT-UGU gene − 46515 46587 73 Locate
trnL-UAA gene + 47219 47784 566 Locate
trnF-GAA gene + 48080 48152 73 Locate
ndhJ gene − 48804 49280 477 Locate
ndhK gene − 49388 50065 678 Locate
ndhC gene − 50118 50480 363 Locate
trnV-UAC gene − 51482 52134 653 Locate
trnM-CAU gene + 52315 52387 73 Locate
atpE gene − 52598 52999 402 Locate
atpB gene − 52996 54492 1497 Locate
rbcL gene + 55259 56701 1443 Locate
accD gene + 57421 58893 1473 Locate
psaI gene + 59588 59698 111 Locate
ycf4 gene + 60125 60679 555 Locate
cemA gene + 61360 62019 660 Locate
petA gene + 62226 63188 963 Locate
pabJ gene − 64231 64353 123 Locate
psbL gene − 64488 64604 117 Locate
psbF gene − 64628 64747 120 Locate
psbE gene − 64762 65013 252 Locate
petL gene + 65921 66016 96 Locate
petG gene + 66192 66305 114 Locate
trnW-CCA gene − 66424 66497 74 Locate
trnP-UGG gene − 66661 66734 74 Locate
psbJ gene + 67003 67137 135 Locate
rpl33 gene + 67609 67809 201 Locate
rps18 gene + 67983 68288 306 Locate
rpl20 gene − 68524 68910 387 Locate
rps12 gene − 69696 69821 126 Locate
clpP gene − 69963 71892 1930 Locate
psbB gene + 72344 73870 1527 Locate
psbT gene + 74062 74163 102 Locate
psbN gene − 74237 74368 132 Locate
psbH gene + 74472 74693 222 Locate
petB gene + 74818 76188 1371 Locate
petD gene + 76377 77582 1206 Locate
rpoA gene − 77745 78758 1014 Locate
rps11 gene − 78830 79246 417 Locate
rpl36 gene − 79348 79461 114 Locate
infA gene − 79557 79790 234 Locate
rps8 gene − 79911 80321 411 Locate
rpl14 gene − 80480 80848 369 Locate
rpl16 gene − 80975 82218 1244 Locate
rps3 gene − 82373 83035 663 Locate
rpl22 gene − 83037 83492 456 Locate
rps19 gene − 83557 83835 279 Locate
rpl2 gene − 83892 85374 1483 Locate
rpl23 gene − 85393 85674 282 Locate
trnI-CAU gene − 85834 85907 74 Locate
ycf2 gene + 85996 92787 6792 Locate
ycf15 gene + 92929 93126 198 Locate
trnL-CAA gene − 93387 93467 81 Locate
ndhB gene − 94010 96212 2203 Locate
rps7 gene − 96487 96954 468 Locate
rps12 gene − 97008 97798 791 Locate
trnV-GAC gene + 99368 99439 72 Locate
rrn16 gene + 99667 101157 1491 Locate
trnI-GAU gene + 101456 102475 1020 Locate
trnA-UGC gene + 102541 103427 887 Locate
rrn23 gene + 103590 106402 2813 Locate
rrn4.5 gene + 106501 106603 103 Locate
rrn5 gene + 106851 106971 121 Locate
trnR-ACG gene + 107196 107269 74 Locate
trnN-GUU gene + 107817 107888 72 Locate
ndhF gene − 108965 111205 2241 Locate
rpl32 gene + 111728 111904 177 Locate
trnL-UAG gene + 112338 112417 80 Locate
ccsA gene + 112511 113485 975 Locate
ndhD gene − 113720 115240 1521 Locate
psaC gene − 115349 115594 246 Locate
ndhE gene − 115846 116151 306 Locate
ndhG gene − 116382 116912 531 Locate
ndhI gene − 117277 117777 501 Locate
ndhA gene − 117858 119955 2098 Locate
ndhH gene − 119957 121138 1182 Locate
rps15 gene − 121235 121507 273 Locate
ycf1 gene − 121782 127097 5316 Locate
trnN-GUU gene + 127427 127498 72 Locate
trnR-ACG gene − 128046 128119 74 Locate
rrn5 gene − 128344 128464 121 Locate
rrn4.5 gene − 128712 128814 103 Locate
rrn23 gene − 128913 131725 2813 Locate
trnA-UGC gene − 131888 132774 887 Locate
trnI-GAU gene − 132840 133859 1020 Locate
rrn16 gene − 134158 135648 1491 Locate
trnV-GAC gene − 135876 135947 72 Locate
rps12 gene + 137517 138307 791 Locate
rps7 gene + 138361 138828 468 Locate
ndhB gene + 139103 141305 2203 Locate
trnL-CAA gene + 141848 141928 81 Locate
ycf15 gene − 142189 142386 198 Locate
ycf2 gene − 142528 149319 6792 Locate
trnI-CAU gene + 149408 149481 74 Locate
rpl23 gene + 149641 149922 282 Locate
rpl2 gene + 149941 151423 1483 Locate
Status Available
Accession MW420957.1
Length 151,521 bp
GC content 38.3%
Annotated genes 132
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 4 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources