Scutellaria altissima chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ059199.1 · 5–78 bp · −
psbA · PQ059199.1 · 379–1,437 bp · −
trnK-UUU · PQ059199.1 · 1,678–4,272 bp · −
matK · PQ059199.1 · 1,967–3,511 bp · −
rps16 · PQ059199.1 · 5,177–6,364 bp · −
trnQ-UUG · PQ059199.1 · 7,476–7,547 bp · −
trnS-GCU · PQ059199.1 · 8,657–8,744 bp · −
atpA · PQ059199.1 · 10,525–12,048 bp · −
atpF · PQ059199.1 · 12,126–13,353 bp · −
atpH · PQ059199.1 · 13,728–13,973 bp · −
atpI · PQ059199.1 · 14,967–15,710 bp · −
rps2 · PQ059199.1 · 16,058–16,894 bp · −
rpoC2 · PQ059199.1 · 16,989–21,188 bp · −
rpoC1 · PQ059199.1 · 21,343–24,175 bp · −
rpoB · PQ059199.1 · 24,202–27,414 bp · −
psbM · PQ059199.1 · 30,463–30,576 bp · −
trnD-GUC · PQ059199.1 · 31,102–31,175 bp · −
trnY-GUA · PQ059199.1 · 31,289–31,372 bp · −
trnE-UUC · PQ059199.1 · 31,432–31,504 bp · −
trnS-UGA · PQ059199.1 · 36,121–36,212 bp · −
trnfM-CAU · PQ059199.1 · 37,207–37,280 bp · −
rps14 · PQ059199.1 · 37,430–37,732 bp · −
psaB · PQ059199.1 · 37,864–40,068 bp · −
psaA · PQ059199.1 · 40,094–42,346 bp · −
ycf3 · PQ059199.1 · 43,045–44,966 bp · −
rps4 · PQ059199.1 · 46,218–46,823 bp · −
trnT-UGU · PQ059199.1 · 47,165–47,237 bp · −
ndhJ · PQ059199.1 · 49,500–49,976 bp · −
ndhK · PQ059199.1 · 50,085–50,762 bp · −
ndhC · PQ059199.1 · 50,815–51,177 bp · −
trnV-UAC · PQ059199.1 · 52,166–52,824 bp · −
atpE · PQ059199.1 · 53,286–53,687 bp · −
atpB · PQ059199.1 · 53,684–55,180 bp · −
psbJ · PQ059199.1 · 64,377–64,499 bp · −
psbL · PQ059199.1 · 64,633–64,749 bp · −
psbF · PQ059199.1 · 64,773–64,892 bp · −
psbE · PQ059199.1 · 64,907–65,158 bp · −
trnW-CCA · PQ059199.1 · 66,568–66,641 bp · −
trnP-UGG · PQ059199.1 · 66,811–66,884 bp · −
rpl20 · PQ059199.1 · 68,692–69,078 bp · −
rps12 · PQ059199.1 · 69,859–69,984 bp · −
rps12 · PQ059199.1 · 97,180–97,970 bp · −
clpP · PQ059199.1 · 70,124–72,059 bp · −
psbN · PQ059199.1 · 74,387–74,518 bp · −
rpoA · PQ059199.1 · 77,899–78,912 bp · −
rps11 · PQ059199.1 · 78,984–79,400 bp · −
rpl36 · PQ059199.1 · 79,502–79,615 bp · −
infA · PQ059199.1 · 79,711–79,944 bp · −
rps8 · PQ059199.1 · 80,067–80,477 bp · −
rpl14 · PQ059199.1 · 80,644–81,012 bp · −
rpl16 · PQ059199.1 · 81,139–82,369 bp · −
rps3 · PQ059199.1 · 82,524–83,186 bp · −
rpl22 · PQ059199.1 · 83,188–83,643 bp · −
rps19 · PQ059199.1 · 83,703–83,981 bp · −
rpl2 · PQ059199.1 · 84,037–85,519 bp · −
rpl23 · PQ059199.1 · 85,538–85,819 bp · −
trnI-CAU · PQ059199.1 · 85,979–86,052 bp · −
trnL-CAA · PQ059199.1 · 93,550–93,630 bp · −
ndhB · PQ059199.1 · 94,173–96,330 bp · −
rps7 · PQ059199.1 · 96,659–97,126 bp · −
trnN-GUU · PQ059199.1 · 108,011–108,082 bp · −
ndhF · PQ059199.1 · 109,159–111,399 bp · −
ndhD · PQ059199.1 · 113,923–115,452 bp · −
psaC · PQ059199.1 · 115,560–115,805 bp · −
ndhE · PQ059199.1 · 116,061–116,366 bp · −
ndhG · PQ059199.1 · 116,590–117,120 bp · −
ndhI · PQ059199.1 · 117,470–117,970 bp · −
ndhA · PQ059199.1 · 118,051–120,159 bp · −
ndhH · PQ059199.1 · 120,161–121,342 bp · −
rps15 · PQ059199.1 · 121,439–121,711 bp · −
ycf1 · PQ059199.1 · 121,978–127,638 bp · −
trnR-ACG · PQ059199.1 · 128,484–128,557 bp · −
rrn5 · PQ059199.1 · 128,792–128,912 bp · −
rrn4.5 · PQ059199.1 · 129,160–129,262 bp · −
rrn23 · PQ059199.1 · 129,361–132,172 bp · −
trnA-UGC · PQ059199.1 · 132,342–133,229 bp · −
trnI-GAU · PQ059199.1 · 133,294–134,313 bp · −
ycf68 · PQ059199.1 · 133,865–134,158 bp · −
rrn16 · PQ059199.1 · 134,612–136,102 bp · −
trnV-GAC · PQ059199.1 · 136,325–136,396 bp · −
ycf15 · PQ059199.1 · 142,650–142,847 bp · −
ycf2 · PQ059199.1 · 142,989–149,798 bp · −
psbK · PQ059199.1 · 7,872–8,057 bp · +
psbI · PQ059199.1 · 8,448–8,558 bp · +
trnG-UCC · PQ059199.1 · 9,437–10,191 bp · +
trnR-UCU · PQ059199.1 · 10,357–10,428 bp · +
trnC-GCA · PQ059199.1 · 28,581–28,651 bp · +
petN · PQ059199.1 · 29,387–29,476 bp · +
trnT-GGU · PQ059199.1 · 32,076–32,147 bp · +
psbD · PQ059199.1 · 33,456–34,517 bp · +
psbC · PQ059199.1 · 34,465–35,886 bp · +
psbZ · PQ059199.1 · 36,532–36,720 bp · +
trnG-GCC · PQ059199.1 · 36,992–37,062 bp · +
trnS-GGA · PQ059199.1 · 45,849–45,935 bp · +
trnL-UAA · PQ059199.1 · 47,913–48,479 bp · +
trnF-GAA · PQ059199.1 · 48,778–48,850 bp · +
trnM-CAU · PQ059199.1 · 53,005–53,077 bp · +
rbcL · PQ059199.1 · 55,928–57,391 bp · +
accD · PQ059199.1 · 58,127–59,617 bp · +
psaI · PQ059199.1 · 59,855–59,965 bp · +
ycf4 · PQ059199.1 · 60,399–60,953 bp · +
cemA · PQ059199.1 · 61,577–62,176 bp · +
petA · PQ059199.1 · 62,383–63,345 bp · +
petL · PQ059199.1 · 66,075–66,170 bp · +
petG · PQ059199.1 · 66,346–66,459 bp · +
psaJ · PQ059199.1 · 67,157–67,291 bp · +
rpl33 · PQ059199.1 · 67,772–67,972 bp · +
rps18 · PQ059199.1 · 68,146–68,451 bp · +
rps12 · PQ059199.1 · 137,969–138,759 bp · +
psbB · PQ059199.1 · 72,513–74,039 bp · +
psbT · PQ059199.1 · 74,219–74,326 bp · +
psbH · PQ059199.1 · 74,622–74,843 bp · +
petB · PQ059199.1 · 74,968–76,336 bp · +
petD · PQ059199.1 · 76,525–77,736 bp · +
ycf2 · PQ059199.1 · 86,141–92,950 bp · +
ycf15 · PQ059199.1 · 93,092–93,289 bp · +
trnV-GAC · PQ059199.1 · 99,543–99,614 bp · +
rrn16 · PQ059199.1 · 99,837–101,327 bp · +
trnI-GAU · PQ059199.1 · 101,626–102,645 bp · +
trnA-UGC · PQ059199.1 · 102,710–103,597 bp · +
rrn23 · PQ059199.1 · 103,767–106,578 bp · +
rrn4.5 · PQ059199.1 · 106,677–106,779 bp · +
rrn5 · PQ059199.1 · 107,027–107,147 bp · +
trnR-ACG · PQ059199.1 · 107,382–107,455 bp · +
rpl32 · PQ059199.1 · 111,910–112,086 bp · +
trnL-UAG · PQ059199.1 · 112,521–112,600 bp · +
ccsA · PQ059199.1 · 112,600–113,685 bp · +
trnN-GUU · PQ059199.1 · 127,857–127,928 bp · +
rps7 · PQ059199.1 · 138,813–139,280 bp · +
ndhB · PQ059199.1 · 139,609–141,766 bp · +
trnL-CAA · PQ059199.1 · 142,309–142,389 bp · +
trnI-CAU · PQ059199.1 · 149,887–149,960 bp · +
rpl23 · PQ059199.1 · 150,120–150,401 bp · +
rpl2 · PQ059199.1 · 150,420–151,902 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria altissima
ANNOTATED PLASTOME
PQ059199.1
151,998 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38000 75999 113998 151998 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU ycf68 rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 5 78 74 Locate
psbA gene − 379 1437 1059 Locate
trnK-UUU gene − 1678 4272 2595 Locate
matK gene − 1967 3511 1545 Locate
rps16 gene − 5177 6364 1188 Locate
trnQ-UUG gene − 7476 7547 72 Locate
psbK gene + 7872 8057 186 Locate
psbI gene + 8448 8558 111 Locate
trnS-GCU gene − 8657 8744 88 Locate
trnG-UCC gene + 9437 10191 755 Locate
trnR-UCU gene + 10357 10428 72 Locate
atpA gene − 10525 12048 1524 Locate
atpF gene − 12126 13353 1228 Locate
atpH gene − 13728 13973 246 Locate
atpI gene − 14967 15710 744 Locate
rps2 gene − 16058 16894 837 Locate
rpoC2 gene − 16989 21188 4200 Locate
rpoC1 gene − 21343 24175 2833 Locate
rpoB gene − 24202 27414 3213 Locate
trnC-GCA gene + 28581 28651 71 Locate
petN gene + 29387 29476 90 Locate
psbM gene − 30463 30576 114 Locate
trnD-GUC gene − 31102 31175 74 Locate
trnY-GUA gene − 31289 31372 84 Locate
trnE-UUC gene − 31432 31504 73 Locate
trnT-GGU gene + 32076 32147 72 Locate
psbD gene + 33456 34517 1062 Locate
psbC gene + 34465 35886 1422 Locate
trnS-UGA gene − 36121 36212 92 Locate
psbZ gene + 36532 36720 189 Locate
trnG-GCC gene + 36992 37062 71 Locate
trnfM-CAU gene − 37207 37280 74 Locate
rps14 gene − 37430 37732 303 Locate
psaB gene − 37864 40068 2205 Locate
psaA gene − 40094 42346 2253 Locate
ycf3 gene − 43045 44966 1922 Locate
trnS-GGA gene + 45849 45935 87 Locate
rps4 gene − 46218 46823 606 Locate
trnT-UGU gene − 47165 47237 73 Locate
trnL-UAA gene + 47913 48479 567 Locate
trnF-GAA gene + 48778 48850 73 Locate
ndhJ gene − 49500 49976 477 Locate
ndhK gene − 50085 50762 678 Locate
ndhC gene − 50815 51177 363 Locate
trnV-UAC gene − 52166 52824 659 Locate
trnM-CAU gene + 53005 53077 73 Locate
atpE gene − 53286 53687 402 Locate
atpB gene − 53684 55180 1497 Locate
rbcL gene + 55928 57391 1464 Locate
accD gene + 58127 59617 1491 Locate
psaI gene + 59855 59965 111 Locate
ycf4 gene + 60399 60953 555 Locate
cemA gene + 61577 62176 600 Locate
petA gene + 62383 63345 963 Locate
psbJ gene − 64377 64499 123 Locate
psbL gene − 64633 64749 117 Locate
psbF gene − 64773 64892 120 Locate
psbE gene − 64907 65158 252 Locate
petL gene + 66075 66170 96 Locate
petG gene + 66346 66459 114 Locate
trnW-CCA gene − 66568 66641 74 Locate
trnP-UGG gene − 66811 66884 74 Locate
psaJ gene + 67157 67291 135 Locate
rpl33 gene + 67772 67972 201 Locate
rps18 gene + 68146 68451 306 Locate
rpl20 gene − 68692 69078 387 Locate
rps12 gene − 69859 69984 126 Locate
clpP gene − 70124 72059 1936 Locate
psbB gene + 72513 74039 1527 Locate
psbT gene + 74219 74326 108 Locate
psbN gene − 74387 74518 132 Locate
psbH gene + 74622 74843 222 Locate
petB gene + 74968 76336 1369 Locate
petD gene + 76525 77736 1212 Locate
rpoA gene − 77899 78912 1014 Locate
rps11 gene − 78984 79400 417 Locate
rpl36 gene − 79502 79615 114 Locate
infA gene − 79711 79944 234 Locate
rps8 gene − 80067 80477 411 Locate
rpl14 gene − 80644 81012 369 Locate
rpl16 gene − 81139 82369 1231 Locate
rps3 gene − 82524 83186 663 Locate
rpl22 gene − 83188 83643 456 Locate
rps19 gene − 83703 83981 279 Locate
rpl2 gene − 84037 85519 1483 Locate
rpl23 gene − 85538 85819 282 Locate
trnI-CAU gene − 85979 86052 74 Locate
ycf2 gene + 86141 92950 6810 Locate
ycf15 gene + 93092 93289 198 Locate
trnL-CAA gene − 93550 93630 81 Locate
ndhB gene − 94173 96330 2158 Locate
rps7 gene − 96659 97126 468 Locate
rps12 gene − 97180 97970 791 Locate
trnV-GAC gene + 99543 99614 72 Locate
rrn16 gene + 99837 101327 1491 Locate
trnI-GAU gene + 101626 102645 1020 Locate
trnA-UGC gene + 102710 103597 888 Locate
rrn23 gene + 103767 106578 2812 Locate
rrn4.5 gene + 106677 106779 103 Locate
rrn5 gene + 107027 107147 121 Locate
trnR-ACG gene + 107382 107455 74 Locate
trnN-GUU gene − 108011 108082 72 Locate
ndhF gene − 109159 111399 2241 Locate
rpl32 gene + 111910 112086 177 Locate
trnL-UAG gene + 112521 112600 80 Locate
ccsA gene + 112600 113685 1086 Locate
ndhD gene − 113923 115452 1530 Locate
psaC gene − 115560 115805 246 Locate
ndhE gene − 116061 116366 306 Locate
ndhG gene − 116590 117120 531 Locate
ndhI gene − 117470 117970 501 Locate
ndhA gene − 118051 120159 2109 Locate
ndhH gene − 120161 121342 1182 Locate
rps15 gene − 121439 121711 273 Locate
ycf1 gene − 121978 127638 5661 Locate
trnN-GUU gene + 127857 127928 72 Locate
trnR-ACG gene − 128484 128557 74 Locate
rrn5 gene − 128792 128912 121 Locate
rrn4.5 gene − 129160 129262 103 Locate
rrn23 gene − 129361 132172 2812 Locate
trnA-UGC gene − 132342 133229 888 Locate
trnI-GAU gene − 133294 134313 1020 Locate
ycf68 gene − 133865 134158 294 Locate
rrn16 gene − 134612 136102 1491 Locate
trnV-GAC gene − 136325 136396 72 Locate
rps12 gene + 137969 138759 791 Locate
rps7 gene + 138813 139280 468 Locate
ndhB gene + 139609 141766 2158 Locate
trnL-CAA gene + 142309 142389 81 Locate
ycf15 gene − 142650 142847 198 Locate
ycf2 gene − 142989 149798 6810 Locate
trnI-CAU gene + 149887 149960 74 Locate
rpl23 gene + 150120 150401 282 Locate
rpl2 gene + 150420 151902 1483 Locate
Status Available
Accession PQ059199.1
Length 151,998 bp
GC content 38.3%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources