Scutellaria amabilis chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ075894.1 · 4–77 bp · −
psbA · PQ075894.1 · 370–1,428 bp · −
trnK-UUU · PQ075894.1 · 1,678–4,258 bp · −
matK · PQ075894.1 · 1,965–3,500 bp · −
rps16 · PQ075894.1 · 5,131–6,295 bp · −
trnQ-UUG · PQ075894.1 · 7,315–7,386 bp · −
trnS-GCU · PQ075894.1 · 8,517–8,604 bp · −
atpA · PQ075894.1 · 10,265–11,788 bp · −
atpF · PQ075894.1 · 11,871–13,098 bp · −
atpH · PQ075894.1 · 13,456–13,701 bp · −
atpI · PQ075894.1 · 14,696–15,439 bp · −
rps2 · PQ075894.1 · 15,787–16,497 bp · −
rpoC2 · PQ075894.1 · 16,714–20,895 bp · −
rpoC1 · PQ075894.1 · 21,050–23,880 bp · −
rpoB · PQ075894.1 · 23,907–27,119 bp · −
psbM · PQ075894.1 · 30,190–30,294 bp · −
trnD-GUC · PQ075894.1 · 30,821–30,894 bp · −
trnY-GUA · PQ075894.1 · 31,008–31,091 bp · −
trnE-UUC · PQ075894.1 · 31,151–31,223 bp · −
trnS-UGA · PQ075894.1 · 35,840–35,931 bp · −
trnfM-CAU · PQ075894.1 · 36,935–37,008 bp · −
rps14 · PQ075894.1 · 37,158–37,460 bp · −
psaB · PQ075894.1 · 37,588–39,792 bp · −
psaA · PQ075894.1 · 39,818–42,070 bp · −
ycf3 · PQ075894.1 · 42,741–44,663 bp · −
rps4 · PQ075894.1 · 45,902–46,507 bp · −
trnT-UGU · PQ075894.1 · 46,849–46,921 bp · −
ndhJ · PQ075894.1 · 49,188–49,664 bp · −
ndhK · PQ075894.1 · 49,772–50,449 bp · −
ndhC · PQ075894.1 · 50,502–50,864 bp · −
trnV-UAC · PQ075894.1 · 51,704–52,356 bp · −
atpE · PQ075894.1 · 52,825–53,226 bp · −
atpB · PQ075894.1 · 53,223–54,710 bp · −
psbJ · PQ075894.1 · 64,310–64,432 bp · −
psbL · PQ075894.1 · 64,566–64,787 bp · −
psbF · PQ075894.1 · 64,706–64,825 bp · −
psbE · PQ075894.1 · 64,840–65,091 bp · −
trnW-CCA · PQ075894.1 · 66,503–66,576 bp · −
trnP-UGG · PQ075894.1 · 66,746–66,819 bp · −
rpl20 · PQ075894.1 · 68,617–69,003 bp · −
rps12 · PQ075894.1 · 69,792–69,917 bp · −
rps12 · PQ075894.1 · 97,118–97,908 bp · −
clpP · PQ075894.1 · 70,060–71,983 bp · −
psbN · PQ075894.1 · 74,343–74,474 bp · −
rpoA · PQ075894.1 · 77,845–78,858 bp · −
rps11 · PQ075894.1 · 78,930–79,346 bp · −
rpl36 · PQ075894.1 · 79,448–79,561 bp · −
infA · PQ075894.1 · 79,657–79,890 bp · −
rps8 · PQ075894.1 · 80,010–80,420 bp · −
rpl14 · PQ075894.1 · 80,591–80,959 bp · −
rpl16 · PQ075894.1 · 81,086–82,312 bp · −
rps3 · PQ075894.1 · 82,468–83,130 bp · −
rpl22 · PQ075894.1 · 83,132–83,587 bp · −
rps19 · PQ075894.1 · 83,647–83,925 bp · −
rpl2 · PQ075894.1 · 83,980–85,462 bp · −
rpl23 · PQ075894.1 · 85,481–85,762 bp · −
trnI-CAU · PQ075894.1 · 85,922–85,995 bp · −
trnL-CAA · PQ075894.1 · 93,488–93,568 bp · −
ndhB · PQ075894.1 · 94,111–96,322 bp · −
rps7 · PQ075894.1 · 96,597–97,064 bp · −
trnN-GUU · PQ075894.1 · 107,938–108,009 bp · −
ndhF · PQ075894.1 · 109,086–111,326 bp · −
ndhD · PQ075894.1 · 113,852–115,375 bp · −
psaC · PQ075894.1 · 115,473–115,718 bp · −
ndhE · PQ075894.1 · 115,975–116,280 bp · −
ndhG · PQ075894.1 · 116,501–117,031 bp · −
ndhI · PQ075894.1 · 117,396–117,896 bp · −
ndhA · PQ075894.1 · 117,977–120,067 bp · −
ndhH · PQ075894.1 · 120,069–121,280 bp · −
rps15 · PQ075894.1 · 121,353–121,625 bp · −
ycf1 · PQ075894.1 · 121,892–127,537 bp · −
trnR-ACG · PQ075894.1 · 128,374–128,447 bp · −
rrn5 · PQ075894.1 · 128,682–128,802 bp · −
rrn4.5 · PQ075894.1 · 129,050–129,152 bp · −
rrn23 · PQ075894.1 · 129,251–132,063 bp · −
trnA-UGC · PQ075894.1 · 132,233–133,115 bp · −
trnI-GAU · PQ075894.1 · 133,180–134,200 bp · −
ycf68 · PQ075894.1 · 133,806–134,045 bp · −
rrn16 · PQ075894.1 · 134,499–135,989 bp · −
trnV-GAC · PQ075894.1 · 136,217–136,288 bp · −
ycf15 · PQ075894.1 · 142,533–142,730 bp · −
ycf2 · PQ075894.1 · 142,872–149,681 bp · −
psbK · PQ075894.1 · 7,711–7,896 bp · +
psbI · PQ075894.1 · 8,288–8,398 bp · +
trnG-UCC · PQ075894.1 · 9,166–9,926 bp · +
trnR-UCU · PQ075894.1 · 10,097–10,168 bp · +
trnC-GCA · PQ075894.1 · 28,287–28,357 bp · +
petN · PQ075894.1 · 29,069–29,158 bp · +
trnT-GGU · PQ075894.1 · 31,799–31,870 bp · +
psbD · PQ075894.1 · 33,173–34,234 bp · +
psbC · PQ075894.1 · 34,182–35,603 bp · +
psbZ · PQ075894.1 · 36,252–36,440 bp · +
trnG-GCC · PQ075894.1 · 36,712–36,782 bp · +
trnS-GGA · PQ075894.1 · 45,538–45,624 bp · +
trnL-UAA · PQ075894.1 · 47,606–48,166 bp · +
trnF-GAA · PQ075894.1 · 48,467–48,539 bp · +
trnM-CAU · PQ075894.1 · 52,537–52,609 bp · +
rbcL · PQ075894.1 · 55,466–56,926 bp · +
accD · PQ075894.1 · 57,649–59,115 bp · +
psaI · PQ075894.1 · 59,673–59,783 bp · +
ycf4 · PQ075894.1 · 60,217–60,771 bp · +
cemA · PQ075894.1 · 61,509–62,108 bp · +
petA · PQ075894.1 · 62,315–63,277 bp · +
petL · PQ075894.1 · 66,001–66,096 bp · +
petG · PQ075894.1 · 66,271–66,384 bp · +
psaJ · PQ075894.1 · 67,092–67,226 bp · +
rpl33 · PQ075894.1 · 67,700–67,900 bp · +
rps18 · PQ075894.1 · 68,075–68,380 bp · +
rps12 · PQ075894.1 · 137,857–138,647 bp · +
psbB · PQ075894.1 · 72,450–73,976 bp · +
psbT · PQ075894.1 · 74,168–74,269 bp · +
psbH · PQ075894.1 · 74,578–74,799 bp · +
petB · PQ075894.1 · 74,924–76,292 bp · +
petD · PQ075894.1 · 76,481–77,682 bp · +
ycf2 · PQ075894.1 · 86,084–92,893 bp · +
ycf15 · PQ075894.1 · 93,035–93,232 bp · +
trnV-GAC · PQ075894.1 · 99,477–99,548 bp · +
rrn16 · PQ075894.1 · 99,776–101,266 bp · +
trnI-GAU · PQ075894.1 · 101,565–102,585 bp · +
trnA-UGC · PQ075894.1 · 102,650–103,532 bp · +
rrn23 · PQ075894.1 · 103,702–106,514 bp · +
rrn4.5 · PQ075894.1 · 106,613–106,715 bp · +
rrn5 · PQ075894.1 · 106,963–107,083 bp · +
trnR-ACG · PQ075894.1 · 107,318–107,391 bp · +
rpl32 · PQ075894.1 · 111,847–112,023 bp · +
trnL-UAG · PQ075894.1 · 112,468–112,547 bp · +
ccsA · PQ075894.1 · 112,645–113,619 bp · +
trnN-GUU · PQ075894.1 · 127,756–127,827 bp · +
rps7 · PQ075894.1 · 138,701–139,168 bp · +
ndhB · PQ075894.1 · 139,443–141,654 bp · +
trnL-CAA · PQ075894.1 · 142,197–142,277 bp · +
trnI-CAU · PQ075894.1 · 149,770–149,843 bp · +
rpl23 · PQ075894.1 · 150,003–150,284 bp · +
rpl2 · PQ075894.1 · 150,303–151,785 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria amabilis
ANNOTATED PLASTOME
PQ075894.1
151,879 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37970 75940 113909 151879 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU ycf68 rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 4 77 74 Locate
psbA gene − 370 1428 1059 Locate
trnK-UUU gene − 1678 4258 2581 Locate
matK gene − 1965 3500 1536 Locate
rps16 gene − 5131 6295 1165 Locate
trnQ-UUG gene − 7315 7386 72 Locate
psbK gene + 7711 7896 186 Locate
psbI gene + 8288 8398 111 Locate
trnS-GCU gene − 8517 8604 88 Locate
trnG-UCC gene + 9166 9926 761 Locate
trnR-UCU gene + 10097 10168 72 Locate
atpA gene − 10265 11788 1524 Locate
atpF gene − 11871 13098 1228 Locate
atpH gene − 13456 13701 246 Locate
atpI gene − 14696 15439 744 Locate
rps2 gene − 15787 16497 711 Locate
rpoC2 gene − 16714 20895 4182 Locate
rpoC1 gene − 21050 23880 2831 Locate
rpoB gene − 23907 27119 3213 Locate
trnC-GCA gene + 28287 28357 71 Locate
petN gene + 29069 29158 90 Locate
psbM gene − 30190 30294 105 Locate
trnD-GUC gene − 30821 30894 74 Locate
trnY-GUA gene − 31008 31091 84 Locate
trnE-UUC gene − 31151 31223 73 Locate
trnT-GGU gene + 31799 31870 72 Locate
psbD gene + 33173 34234 1062 Locate
psbC gene + 34182 35603 1422 Locate
trnS-UGA gene − 35840 35931 92 Locate
psbZ gene + 36252 36440 189 Locate
trnG-GCC gene + 36712 36782 71 Locate
trnfM-CAU gene − 36935 37008 74 Locate
rps14 gene − 37158 37460 303 Locate
psaB gene − 37588 39792 2205 Locate
psaA gene − 39818 42070 2253 Locate
ycf3 gene − 42741 44663 1923 Locate
trnS-GGA gene + 45538 45624 87 Locate
rps4 gene − 45902 46507 606 Locate
trnT-UGU gene − 46849 46921 73 Locate
trnL-UAA gene + 47606 48166 561 Locate
trnF-GAA gene + 48467 48539 73 Locate
ndhJ gene − 49188 49664 477 Locate
ndhK gene − 49772 50449 678 Locate
ndhC gene − 50502 50864 363 Locate
trnV-UAC gene − 51704 52356 653 Locate
trnM-CAU gene + 52537 52609 73 Locate
atpE gene − 52825 53226 402 Locate
atpB gene − 53223 54710 1488 Locate
rbcL gene + 55466 56926 1461 Locate
accD gene + 57649 59115 1467 Locate
psaI gene + 59673 59783 111 Locate
ycf4 gene + 60217 60771 555 Locate
cemA gene + 61509 62108 600 Locate
petA gene + 62315 63277 963 Locate
psbJ gene − 64310 64432 123 Locate
psbL gene − 64566 64787 222 Locate
psbF gene − 64706 64825 120 Locate
psbE gene − 64840 65091 252 Locate
petL gene + 66001 66096 96 Locate
petG gene + 66271 66384 114 Locate
trnW-CCA gene − 66503 66576 74 Locate
trnP-UGG gene − 66746 66819 74 Locate
psaJ gene + 67092 67226 135 Locate
rpl33 gene + 67700 67900 201 Locate
rps18 gene + 68075 68380 306 Locate
rpl20 gene − 68617 69003 387 Locate
rps12 gene − 69792 69917 126 Locate
clpP gene − 70060 71983 1924 Locate
psbB gene + 72450 73976 1527 Locate
psbT gene + 74168 74269 102 Locate
psbN gene − 74343 74474 132 Locate
psbH gene + 74578 74799 222 Locate
petB gene + 74924 76292 1369 Locate
petD gene + 76481 77682 1202 Locate
rpoA gene − 77845 78858 1014 Locate
rps11 gene − 78930 79346 417 Locate
rpl36 gene − 79448 79561 114 Locate
infA gene − 79657 79890 234 Locate
rps8 gene − 80010 80420 411 Locate
rpl14 gene − 80591 80959 369 Locate
rpl16 gene − 81086 82312 1227 Locate
rps3 gene − 82468 83130 663 Locate
rpl22 gene − 83132 83587 456 Locate
rps19 gene − 83647 83925 279 Locate
rpl2 gene − 83980 85462 1483 Locate
rpl23 gene − 85481 85762 282 Locate
trnI-CAU gene − 85922 85995 74 Locate
ycf2 gene + 86084 92893 6810 Locate
ycf15 gene + 93035 93232 198 Locate
trnL-CAA gene − 93488 93568 81 Locate
ndhB gene − 94111 96322 2212 Locate
rps7 gene − 96597 97064 468 Locate
rps12 gene − 97118 97908 791 Locate
trnV-GAC gene + 99477 99548 72 Locate
rrn16 gene + 99776 101266 1491 Locate
trnI-GAU gene + 101565 102585 1021 Locate
trnA-UGC gene + 102650 103532 883 Locate
rrn23 gene + 103702 106514 2813 Locate
rrn4.5 gene + 106613 106715 103 Locate
rrn5 gene + 106963 107083 121 Locate
trnR-ACG gene + 107318 107391 74 Locate
trnN-GUU gene − 107938 108009 72 Locate
ndhF gene − 109086 111326 2241 Locate
rpl32 gene + 111847 112023 177 Locate
trnL-UAG gene + 112468 112547 80 Locate
ccsA gene + 112645 113619 975 Locate
ndhD gene − 113852 115375 1524 Locate
psaC gene − 115473 115718 246 Locate
ndhE gene − 115975 116280 306 Locate
ndhG gene − 116501 117031 531 Locate
ndhI gene − 117396 117896 501 Locate
ndhA gene − 117977 120067 2091 Locate
ndhH gene − 120069 121280 1212 Locate
rps15 gene − 121353 121625 273 Locate
ycf1 gene − 121892 127537 5646 Locate
trnN-GUU gene + 127756 127827 72 Locate
trnR-ACG gene − 128374 128447 74 Locate
rrn5 gene − 128682 128802 121 Locate
rrn4.5 gene − 129050 129152 103 Locate
rrn23 gene − 129251 132063 2813 Locate
trnA-UGC gene − 132233 133115 883 Locate
trnI-GAU gene − 133180 134200 1021 Locate
ycf68 gene − 133806 134045 240 Locate
rrn16 gene − 134499 135989 1491 Locate
trnV-GAC gene − 136217 136288 72 Locate
rps12 gene + 137857 138647 791 Locate
rps7 gene + 138701 139168 468 Locate
ndhB gene + 139443 141654 2212 Locate
trnL-CAA gene + 142197 142277 81 Locate
ycf15 gene − 142533 142730 198 Locate
ycf2 gene − 142872 149681 6810 Locate
trnI-CAU gene + 149770 149843 74 Locate
rpl23 gene + 150003 150284 282 Locate
rpl2 gene + 150303 151785 1483 Locate
Status Available
Accession PQ075894.1
Length 151,879 bp
GC content 38.4%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources