Scutellaria antirrhinoides chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ075899.1 · 3–76 bp · −
psbA · PQ075899.1 · 364–1,422 bp · −
trnK-UUU · PQ075899.1 · 1,663–4,260 bp · −
matK · PQ075899.1 · 1,958–3,493 bp · −
rps16 · PQ075899.1 · 5,163–6,331 bp · −
trnQ-UUG · PQ075899.1 · 7,457–7,528 bp · −
trnS-GCU · PQ075899.1 · 8,657–8,744 bp · −
atpA · PQ075899.1 · 10,519–12,042 bp · −
atpF · PQ075899.1 · 12,116–13,342 bp · −
atpH · PQ075899.1 · 13,701–13,946 bp · −
atpI · PQ075899.1 · 14,944–15,687 bp · −
rps2 · PQ075899.1 · 16,038–16,874 bp · −
rpoC2 · PQ075899.1 · 16,965–21,170 bp · −
rpoC1 · PQ075899.1 · 21,325–24,154 bp · −
rpoB · PQ075899.1 · 24,181–27,393 bp · −
psbM · PQ075899.1 · 30,425–30,529 bp · −
trnD-GUC · PQ075899.1 · 31,055–31,128 bp · −
trnY-GUA · PQ075899.1 · 31,242–31,325 bp · −
trnE-UUC · PQ075899.1 · 31,385–31,457 bp · −
trnS-UGA · PQ075899.1 · 36,089–36,180 bp · −
trnfM-CAU · PQ075899.1 · 37,190–37,263 bp · −
rps14 · PQ075899.1 · 37,413–37,715 bp · −
psaB · PQ075899.1 · 37,841–40,045 bp · −
psaA · PQ075899.1 · 40,071–42,323 bp · −
ycf3 · PQ075899.1 · 42,997–44,919 bp · −
rps4 · PQ075899.1 · 46,178–46,783 bp · −
trnT-UGU · PQ075899.1 · 47,122–47,194 bp · −
ndhJ · PQ075899.1 · 49,467–49,943 bp · −
ndhK · PQ075899.1 · 50,052–50,729 bp · −
ndhC · PQ075899.1 · 50,782–51,144 bp · −
trnV-UAC · PQ075899.1 · 52,142–52,794 bp · −
atpE · PQ075899.1 · 53,257–53,658 bp · −
atpB · PQ075899.1 · 53,655–55,142 bp · −
psbJ · PQ075899.1 · 64,893–65,015 bp · −
psbL · PQ075899.1 · 65,150–65,371 bp · −
psbF · PQ075899.1 · 65,290–65,409 bp · −
psbE · PQ075899.1 · 65,424–65,675 bp · −
trnW-CCA · PQ075899.1 · 67,086–67,159 bp · −
trnP-UGG · PQ075899.1 · 67,329–67,402 bp · −
rpl20 · PQ075899.1 · 69,197–69,583 bp · −
rps12 · PQ075899.1 · 70,379–70,492 bp · −
rps12 · PQ075899.1 · 97,721–98,511 bp · −
clpP · PQ075899.1 · 70,635–72,567 bp · −
psbN · PQ075899.1 · 74,934–75,065 bp · −
rpoA · PQ075899.1 · 78,429–79,442 bp · −
rps11 · PQ075899.1 · 79,514–79,930 bp · −
rpl36 · PQ075899.1 · 80,032–80,145 bp · −
infA · PQ075899.1 · 80,241–80,474 bp · −
rps8 · PQ075899.1 · 80,594–81,004 bp · −
rpl14 · PQ075899.1 · 81,172–81,540 bp · −
rpl16 · PQ075899.1 · 81,667–82,911 bp · −
rps3 · PQ075899.1 · 83,066–83,728 bp · −
rpl22 · PQ075899.1 · 83,730–84,185 bp · −
rps19 · PQ075899.1 · 84,245–84,523 bp · −
rpl2 · PQ075899.1 · 84,578–86,060 bp · −
rpl23 · PQ075899.1 · 86,079–86,360 bp · −
trnI-CAU · PQ075899.1 · 86,520–86,593 bp · −
trnL-CAA · PQ075899.1 · 94,086–94,166 bp · −
ndhB · PQ075899.1 · 94,709–96,871 bp · −
rps7 · PQ075899.1 · 97,200–97,667 bp · −
trnN-GUU · PQ075899.1 · 108,551–108,622 bp · −
ndhF · PQ075899.1 · 109,699–111,939 bp · −
ndhD · PQ075899.1 · 114,447–115,949 bp · −
psaC · PQ075899.1 · 116,069–116,314 bp · −
ndhE · PQ075899.1 · 116,571–116,876 bp · −
ndhG · PQ075899.1 · 117,086–117,616 bp · −
ndhI · PQ075899.1 · 117,981–118,481 bp · −
ndhA · PQ075899.1 · 118,562–120,654 bp · −
ndhH · PQ075899.1 · 120,656–121,837 bp · −
rps15 · PQ075899.1 · 121,940–122,212 bp · −
ycf1 · PQ075899.1 · 122,480–128,119 bp · −
trnR-ACG · PQ075899.1 · 128,957–129,030 bp · −
rrn5 · PQ075899.1 · 129,265–129,385 bp · −
rrn4.5 · PQ075899.1 · 129,633–129,735 bp · −
rrn23 · PQ075899.1 · 129,834–132,646 bp · −
trnA-UGC · PQ075899.1 · 132,816–133,698 bp · −
trnI-GAU · PQ075899.1 · 133,763–134,783 bp · −
ycf68 · PQ075899.1 · 134,389–134,628 bp · −
rrn16 · PQ075899.1 · 135,082–136,572 bp · −
trnV-GAC · PQ075899.1 · 136,800–136,871 bp · −
ycf15 · PQ075899.1 · 143,130–143,327 bp · −
ycf2 · PQ075899.1 · 143,469–150,278 bp · −
psbK · PQ075899.1 · 7,853–8,038 bp · +
psbI · PQ075899.1 · 8,430–8,540 bp · +
trnG-UCC · PQ075899.1 · 9,416–10,176 bp · +
trnR-UCU · PQ075899.1 · 10,351–10,422 bp · +
trnC-GCA · PQ075899.1 · 28,555–28,625 bp · +
petN · PQ075899.1 · 29,331–29,420 bp · +
trnT-GGU · PQ075899.1 · 32,040–32,111 bp · +
psbD · PQ075899.1 · 33,414–34,475 bp · +
psbC · PQ075899.1 · 34,423–35,844 bp · +
psbZ · PQ075899.1 · 36,501–36,689 bp · +
trnG-GCC · PQ075899.1 · 36,961–37,031 bp · +
trnS-GGA · PQ075899.1 · 45,806–45,892 bp · +
trnL-UAA · PQ075899.1 · 47,865–48,434 bp · +
trnF-GAA · PQ075899.1 · 48,740–48,812 bp · +
trnM-CAU · PQ075899.1 · 52,975–53,047 bp · +
rbcL · PQ075899.1 · 55,883–57,346 bp · +
accD · PQ075899.1 · 58,076–59,542 bp · +
psaI · PQ075899.1 · 60,259–60,369 bp · +
ycf4 · PQ075899.1 · 60,795–61,349 bp · +
cemA · PQ075899.1 · 62,095–62,694 bp · +
petA · PQ075899.1 · 62,901–63,863 bp · +
petL · PQ075899.1 · 66,583–66,678 bp · +
petG · PQ075899.1 · 66,854–66,967 bp · +
psaJ · PQ075899.1 · 67,675–67,809 bp · +
rpl33 · PQ075899.1 · 68,281–68,481 bp · +
rps18 · PQ075899.1 · 68,656–68,961 bp · +
rps12 · PQ075899.1 · 138,449–139,239 bp · +
psbB · PQ075899.1 · 73,041–74,567 bp · +
psbT · PQ075899.1 · 74,759–74,860 bp · +
psbH · PQ075899.1 · 75,169–75,390 bp · +
petB · PQ075899.1 · 75,515–76,883 bp · +
petD · PQ075899.1 · 77,072–78,266 bp · +
ycf2 · PQ075899.1 · 86,682–93,491 bp · +
ycf15 · PQ075899.1 · 93,633–93,830 bp · +
trnV-GAC · PQ075899.1 · 100,089–100,160 bp · +
rrn16 · PQ075899.1 · 100,388–101,878 bp · +
trnI-GAU · PQ075899.1 · 102,177–103,197 bp · +
trnA-UGC · PQ075899.1 · 103,262–104,144 bp · +
rrn23 · PQ075899.1 · 104,314–107,126 bp · +
rrn4.5 · PQ075899.1 · 107,225–107,327 bp · +
rrn5 · PQ075899.1 · 107,575–107,695 bp · +
trnR-ACG · PQ075899.1 · 107,930–108,003 bp · +
rpl32 · PQ075899.1 · 112,460–112,636 bp · +
trnL-UAG · PQ075899.1 · 113,063–113,142 bp · +
ccsA · PQ075899.1 · 113,240–114,214 bp · +
trnN-GUU · PQ075899.1 · 128,338–128,409 bp · +
rps7 · PQ075899.1 · 139,293–139,760 bp · +
ndhB · PQ075899.1 · 140,089–142,251 bp · +
trnL-CAA · PQ075899.1 · 142,794–142,874 bp · +
trnI-CAU · PQ075899.1 · 150,367–150,440 bp · +
rpl23 · PQ075899.1 · 150,600–150,881 bp · +
rpl2 · PQ075899.1 · 150,900–152,382 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria antirrhinoides
ANNOTATED PLASTOME
PQ075899.1
152,477 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38119 76238 114358 152477 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU ycf68 rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 3 76 74 Locate
psbA gene − 364 1422 1059 Locate
trnK-UUU gene − 1663 4260 2598 Locate
matK gene − 1958 3493 1536 Locate
rps16 gene − 5163 6331 1169 Locate
trnQ-UUG gene − 7457 7528 72 Locate
psbK gene + 7853 8038 186 Locate
psbI gene + 8430 8540 111 Locate
trnS-GCU gene − 8657 8744 88 Locate
trnG-UCC gene + 9416 10176 761 Locate
trnR-UCU gene + 10351 10422 72 Locate
atpA gene − 10519 12042 1524 Locate
atpF gene − 12116 13342 1227 Locate
atpH gene − 13701 13946 246 Locate
atpI gene − 14944 15687 744 Locate
rps2 gene − 16038 16874 837 Locate
rpoC2 gene − 16965 21170 4206 Locate
rpoC1 gene − 21325 24154 2830 Locate
rpoB gene − 24181 27393 3213 Locate
trnC-GCA gene + 28555 28625 71 Locate
petN gene + 29331 29420 90 Locate
psbM gene − 30425 30529 105 Locate
trnD-GUC gene − 31055 31128 74 Locate
trnY-GUA gene − 31242 31325 84 Locate
trnE-UUC gene − 31385 31457 73 Locate
trnT-GGU gene + 32040 32111 72 Locate
psbD gene + 33414 34475 1062 Locate
psbC gene + 34423 35844 1422 Locate
trnS-UGA gene − 36089 36180 92 Locate
psbZ gene + 36501 36689 189 Locate
trnG-GCC gene + 36961 37031 71 Locate
trnfM-CAU gene − 37190 37263 74 Locate
rps14 gene − 37413 37715 303 Locate
psaB gene − 37841 40045 2205 Locate
psaA gene − 40071 42323 2253 Locate
ycf3 gene − 42997 44919 1923 Locate
trnS-GGA gene + 45806 45892 87 Locate
rps4 gene − 46178 46783 606 Locate
trnT-UGU gene − 47122 47194 73 Locate
trnL-UAA gene + 47865 48434 570 Locate
trnF-GAA gene + 48740 48812 73 Locate
ndhJ gene − 49467 49943 477 Locate
ndhK gene − 50052 50729 678 Locate
ndhC gene − 50782 51144 363 Locate
trnV-UAC gene − 52142 52794 653 Locate
trnM-CAU gene + 52975 53047 73 Locate
atpE gene − 53257 53658 402 Locate
atpB gene − 53655 55142 1488 Locate
rbcL gene + 55883 57346 1464 Locate
accD gene + 58076 59542 1467 Locate
psaI gene + 60259 60369 111 Locate
ycf4 gene + 60795 61349 555 Locate
cemA gene + 62095 62694 600 Locate
petA gene + 62901 63863 963 Locate
psbJ gene − 64893 65015 123 Locate
psbL gene − 65150 65371 222 Locate
psbF gene − 65290 65409 120 Locate
psbE gene − 65424 65675 252 Locate
petL gene + 66583 66678 96 Locate
petG gene + 66854 66967 114 Locate
trnW-CCA gene − 67086 67159 74 Locate
trnP-UGG gene − 67329 67402 74 Locate
psaJ gene + 67675 67809 135 Locate
rpl33 gene + 68281 68481 201 Locate
rps18 gene + 68656 68961 306 Locate
rpl20 gene − 69197 69583 387 Locate
rps12 gene − 70379 70492 114 Locate
clpP gene − 70635 72567 1933 Locate
psbB gene + 73041 74567 1527 Locate
psbT gene + 74759 74860 102 Locate
psbN gene − 74934 75065 132 Locate
psbH gene + 75169 75390 222 Locate
petB gene + 75515 76883 1369 Locate
petD gene + 77072 78266 1195 Locate
rpoA gene − 78429 79442 1014 Locate
rps11 gene − 79514 79930 417 Locate
rpl36 gene − 80032 80145 114 Locate
infA gene − 80241 80474 234 Locate
rps8 gene − 80594 81004 411 Locate
rpl14 gene − 81172 81540 369 Locate
rpl16 gene − 81667 82911 1245 Locate
rps3 gene − 83066 83728 663 Locate
rpl22 gene − 83730 84185 456 Locate
rps19 gene − 84245 84523 279 Locate
rpl2 gene − 84578 86060 1483 Locate
rpl23 gene − 86079 86360 282 Locate
trnI-CAU gene − 86520 86593 74 Locate
ycf2 gene + 86682 93491 6810 Locate
ycf15 gene + 93633 93830 198 Locate
trnL-CAA gene − 94086 94166 81 Locate
ndhB gene − 94709 96871 2163 Locate
rps7 gene − 97200 97667 468 Locate
rps12 gene − 97721 98511 791 Locate
trnV-GAC gene + 100089 100160 72 Locate
rrn16 gene + 100388 101878 1491 Locate
trnI-GAU gene + 102177 103197 1021 Locate
trnA-UGC gene + 103262 104144 883 Locate
rrn23 gene + 104314 107126 2813 Locate
rrn4.5 gene + 107225 107327 103 Locate
rrn5 gene + 107575 107695 121 Locate
trnR-ACG gene + 107930 108003 74 Locate
trnN-GUU gene − 108551 108622 72 Locate
ndhF gene − 109699 111939 2241 Locate
rpl32 gene + 112460 112636 177 Locate
trnL-UAG gene + 113063 113142 80 Locate
ccsA gene + 113240 114214 975 Locate
ndhD gene − 114447 115949 1503 Locate
psaC gene − 116069 116314 246 Locate
ndhE gene − 116571 116876 306 Locate
ndhG gene − 117086 117616 531 Locate
ndhI gene − 117981 118481 501 Locate
ndhA gene − 118562 120654 2093 Locate
ndhH gene − 120656 121837 1182 Locate
rps15 gene − 121940 122212 273 Locate
ycf1 gene − 122480 128119 5640 Locate
trnN-GUU gene + 128338 128409 72 Locate
trnR-ACG gene − 128957 129030 74 Locate
rrn5 gene − 129265 129385 121 Locate
rrn4.5 gene − 129633 129735 103 Locate
rrn23 gene − 129834 132646 2813 Locate
trnA-UGC gene − 132816 133698 883 Locate
trnI-GAU gene − 133763 134783 1021 Locate
ycf68 gene − 134389 134628 240 Locate
rrn16 gene − 135082 136572 1491 Locate
trnV-GAC gene − 136800 136871 72 Locate
rps12 gene + 138449 139239 791 Locate
rps7 gene + 139293 139760 468 Locate
ndhB gene + 140089 142251 2163 Locate
trnL-CAA gene + 142794 142874 81 Locate
ycf15 gene − 143130 143327 198 Locate
ycf2 gene − 143469 150278 6810 Locate
trnI-CAU gene + 150367 150440 74 Locate
rpl23 gene + 150600 150881 282 Locate
rpl2 gene + 150900 152382 1483 Locate
Status Available
Accession PQ075899.1
Length 152,477 bp
GC content 38.3%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources