Scutellaria arabica chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ059208.1 · 4–77 bp · −
psbA · PQ059208.1 · 378–1,436 bp · −
trnK-UUU · PQ059208.1 · 1,678–4,270 bp · −
matK · PQ059208.1 · 1,967–3,511 bp · −
rps16 · PQ059208.1 · 5,185–6,356 bp · −
trnQ-UUG · PQ059208.1 · 7,468–7,539 bp · −
trnS-GCU · PQ059208.1 · 8,662–8,749 bp · −
atpA · PQ059208.1 · 10,535–12,058 bp · −
atpF · PQ059208.1 · 12,143–13,373 bp · −
atpH · PQ059208.1 · 13,745–13,990 bp · −
atpI · PQ059208.1 · 14,984–15,727 bp · −
rps2 · PQ059208.1 · 16,075–16,785 bp · −
rpoC2 · PQ059208.1 · 17,003–21,202 bp · −
rpoC1 · PQ059208.1 · 21,357–24,175 bp · −
rpoB · PQ059208.1 · 24,202–27,414 bp · −
psbM · PQ059208.1 · 30,500–30,604 bp · −
trnD-GUC · PQ059208.1 · 31,136–31,209 bp · −
trnY-GUA · PQ059208.1 · 31,323–31,406 bp · −
trnE-UUC · PQ059208.1 · 31,466–31,538 bp · −
trnS-UGA · PQ059208.1 · 36,163–36,254 bp · −
trnfM-CAU · PQ059208.1 · 37,250–37,323 bp · −
rps14 · PQ059208.1 · 37,473–37,775 bp · −
psaB · PQ059208.1 · 37,906–40,110 bp · −
psaA · PQ059208.1 · 40,136–42,388 bp · −
ycf3 · PQ059208.1 · 43,091–45,021 bp · −
rps4 · PQ059208.1 · 46,266–46,871 bp · −
trnT-UGU · PQ059208.1 · 47,212–47,284 bp · −
ndhJ · PQ059208.1 · 49,541–50,017 bp · −
ndhK · PQ059208.1 · 50,122–50,799 bp · −
ndhC · PQ059208.1 · 50,852–51,214 bp · −
trnV-UAC · PQ059208.1 · 52,203–52,861 bp · −
atpE · PQ059208.1 · 53,323–53,724 bp · −
atpB · PQ059208.1 · 53,721–55,217 bp · −
psbJ · PQ059208.1 · 64,372–64,494 bp · −
psbL · PQ059208.1 · 64,628–64,849 bp · −
psbF · PQ059208.1 · 64,768–64,887 bp · −
psbE · PQ059208.1 · 64,902–65,153 bp · −
trnW-CCA · PQ059208.1 · 66,569–66,642 bp · −
trnP-UGG · PQ059208.1 · 66,812–66,885 bp · −
rpl20 · PQ059208.1 · 68,682–69,068 bp · −
rps12 · PQ059208.1 · 69,865–69,978 bp · −
rps12 · PQ059208.1 · 97,177–97,967 bp · −
clpP · PQ059208.1 · 70,120–72,055 bp · −
psbN · PQ059208.1 · 74,383–74,514 bp · −
rpoA · PQ059208.1 · 77,896–78,909 bp · −
rps11 · PQ059208.1 · 78,981–79,397 bp · −
rpl36 · PQ059208.1 · 79,499–79,612 bp · −
infA · PQ059208.1 · 79,708–79,941 bp · −
rps8 · PQ059208.1 · 80,064–80,474 bp · −
rpl14 · PQ059208.1 · 80,640–81,008 bp · −
rpl16 · PQ059208.1 · 81,135–82,365 bp · −
rps3 · PQ059208.1 · 82,520–83,182 bp · −
rpl22 · PQ059208.1 · 83,184–83,639 bp · −
rps19 · PQ059208.1 · 83,699–83,977 bp · −
rpl2 · PQ059208.1 · 84,034–85,516 bp · −
rpl23 · PQ059208.1 · 85,535–85,816 bp · −
trnI-CAU · PQ059208.1 · 85,976–86,049 bp · −
trnL-CAA · PQ059208.1 · 93,547–93,627 bp · −
ndhB · PQ059208.1 · 94,170–96,381 bp · −
rps7 · PQ059208.1 · 96,656–97,123 bp · −
trnN-GUU · PQ059208.1 · 108,004–108,075 bp · −
ndhF · PQ059208.1 · 109,152–111,392 bp · −
ndhD · PQ059208.1 · 113,893–115,395 bp · −
psaC · PQ059208.1 · 115,529–115,774 bp · −
ndhE · PQ059208.1 · 116,030–116,335 bp · −
ndhG · PQ059208.1 · 116,559–117,089 bp · −
ndhI · PQ059208.1 · 117,438–117,938 bp · −
ndhA · PQ059208.1 · 118,019–120,128 bp · −
ndhH · PQ059208.1 · 120,130–121,311 bp · −
rps15 · PQ059208.1 · 121,408–121,680 bp · −
ycf1 · PQ059208.1 · 121,949–127,645 bp · −
trnR-ACG · PQ059208.1 · 128,491–128,564 bp · −
rrn5 · PQ059208.1 · 128,799–128,919 bp · −
rrn4.5 · PQ059208.1 · 129,167–129,269 bp · −
rrn23 · PQ059208.1 · 129,368–132,179 bp · −
trnA-UGC · PQ059208.1 · 132,349–133,233 bp · −
trnI-GAU · PQ059208.1 · 133,298–134,316 bp · −
ycf68 · PQ059208.1 · 133,868–134,161 bp · −
rrn16 · PQ059208.1 · 134,615–136,105 bp · −
trnV-GAC · PQ059208.1 · 136,328–136,399 bp · −
ycf15 · PQ059208.1 · 142,653–142,850 bp · −
ycf2 · PQ059208.1 · 142,992–149,801 bp · −
psbK · PQ059208.1 · 7,864–8,049 bp · +
psbI · PQ059208.1 · 8,453–8,563 bp · +
trnG-UCC · PQ059208.1 · 9,443–10,197 bp · +
trnR-UCU · PQ059208.1 · 10,367–10,438 bp · +
trnC-GCA · PQ059208.1 · 28,597–28,667 bp · +
petN · PQ059208.1 · 29,403–29,492 bp · +
trnT-GGU · PQ059208.1 · 32,110–32,181 bp · +
psbD · PQ059208.1 · 33,498–34,559 bp · +
psbC · PQ059208.1 · 34,507–35,928 bp · +
psbZ · PQ059208.1 · 36,574–36,762 bp · +
trnG-GCC · PQ059208.1 · 37,035–37,105 bp · +
trnS-GGA · PQ059208.1 · 45,895–45,981 bp · +
trnL-UAA · PQ059208.1 · 47,947–48,513 bp · +
trnF-GAA · PQ059208.1 · 48,819–48,891 bp · +
trnM-CAU · PQ059208.1 · 53,042–53,114 bp · +
rbcL · PQ059208.1 · 55,965–57,428 bp · +
accD · PQ059208.1 · 58,154–59,644 bp · +
psaI · PQ059208.1 · 59,882–59,992 bp · +
ycf4 · PQ059208.1 · 60,426–60,980 bp · +
cemA · PQ059208.1 · 61,594–62,193 bp · +
petA · PQ059208.1 · 62,389–63,351 bp · +
petL · PQ059208.1 · 66,076–66,171 bp · +
petG · PQ059208.1 · 66,347–66,460 bp · +
psaJ · PQ059208.1 · 67,158–67,292 bp · +
rpl33 · PQ059208.1 · 67,761–67,961 bp · +
rps18 · PQ059208.1 · 68,136–68,441 bp · +
rps12 · PQ059208.1 · 137,972–138,762 bp · +
psbB · PQ059208.1 · 72,509–74,035 bp · +
psbT · PQ059208.1 · 74,215–74,322 bp · +
psbH · PQ059208.1 · 74,618–74,839 bp · +
petB · PQ059208.1 · 74,964–76,333 bp · +
petD · PQ059208.1 · 76,522–77,733 bp · +
ycf2 · PQ059208.1 · 86,138–92,947 bp · +
ycf15 · PQ059208.1 · 93,089–93,286 bp · +
trnV-GAC · PQ059208.1 · 99,540–99,611 bp · +
rrn16 · PQ059208.1 · 99,834–101,324 bp · +
trnI-GAU · PQ059208.1 · 101,623–102,641 bp · +
trnA-UGC · PQ059208.1 · 102,706–103,590 bp · +
rrn23 · PQ059208.1 · 103,760–106,571 bp · +
rrn4.5 · PQ059208.1 · 106,670–106,772 bp · +
rrn5 · PQ059208.1 · 107,020–107,140 bp · +
trnR-ACG · PQ059208.1 · 107,375–107,448 bp · +
rpl32 · PQ059208.1 · 111,906–112,082 bp · +
trnL-UAG · PQ059208.1 · 112,517–112,596 bp · +
ccsA · PQ059208.1 · 112,681–113,655 bp · +
trnN-GUU · PQ059208.1 · 127,864–127,935 bp · +
rps7 · PQ059208.1 · 138,816–139,283 bp · +
ndhB · PQ059208.1 · 139,558–141,769 bp · +
trnL-CAA · PQ059208.1 · 142,312–142,392 bp · +
trnI-CAU · PQ059208.1 · 149,890–149,963 bp · +
rpl23 · PQ059208.1 · 150,123–150,404 bp · +
rpl2 · PQ059208.1 · 150,423–151,905 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria arabica
ANNOTATED PLASTOME
PQ059208.1
152,002 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38000 76001 114002 152002 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU ycf68 rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 4 77 74 Locate
psbA gene − 378 1436 1059 Locate
trnK-UUU gene − 1678 4270 2593 Locate
matK gene − 1967 3511 1545 Locate
rps16 gene − 5185 6356 1172 Locate
trnQ-UUG gene − 7468 7539 72 Locate
psbK gene + 7864 8049 186 Locate
psbI gene + 8453 8563 111 Locate
trnS-GCU gene − 8662 8749 88 Locate
trnG-UCC gene + 9443 10197 755 Locate
trnR-UCU gene + 10367 10438 72 Locate
atpA gene − 10535 12058 1524 Locate
atpF gene − 12143 13373 1231 Locate
atpH gene − 13745 13990 246 Locate
atpI gene − 14984 15727 744 Locate
rps2 gene − 16075 16785 711 Locate
rpoC2 gene − 17003 21202 4200 Locate
rpoC1 gene − 21357 24175 2819 Locate
rpoB gene − 24202 27414 3213 Locate
trnC-GCA gene + 28597 28667 71 Locate
petN gene + 29403 29492 90 Locate
psbM gene − 30500 30604 105 Locate
trnD-GUC gene − 31136 31209 74 Locate
trnY-GUA gene − 31323 31406 84 Locate
trnE-UUC gene − 31466 31538 73 Locate
trnT-GGU gene + 32110 32181 72 Locate
psbD gene + 33498 34559 1062 Locate
psbC gene + 34507 35928 1422 Locate
trnS-UGA gene − 36163 36254 92 Locate
psbZ gene + 36574 36762 189 Locate
trnG-GCC gene + 37035 37105 71 Locate
trnfM-CAU gene − 37250 37323 74 Locate
rps14 gene − 37473 37775 303 Locate
psaB gene − 37906 40110 2205 Locate
psaA gene − 40136 42388 2253 Locate
ycf3 gene − 43091 45021 1931 Locate
trnS-GGA gene + 45895 45981 87 Locate
rps4 gene − 46266 46871 606 Locate
trnT-UGU gene − 47212 47284 73 Locate
trnL-UAA gene + 47947 48513 567 Locate
trnF-GAA gene + 48819 48891 73 Locate
ndhJ gene − 49541 50017 477 Locate
ndhK gene − 50122 50799 678 Locate
ndhC gene − 50852 51214 363 Locate
trnV-UAC gene − 52203 52861 659 Locate
trnM-CAU gene + 53042 53114 73 Locate
atpE gene − 53323 53724 402 Locate
atpB gene − 53721 55217 1497 Locate
rbcL gene + 55965 57428 1464 Locate
accD gene + 58154 59644 1491 Locate
psaI gene + 59882 59992 111 Locate
ycf4 gene + 60426 60980 555 Locate
cemA gene + 61594 62193 600 Locate
petA gene + 62389 63351 963 Locate
psbJ gene − 64372 64494 123 Locate
psbL gene − 64628 64849 222 Locate
psbF gene − 64768 64887 120 Locate
psbE gene − 64902 65153 252 Locate
petL gene + 66076 66171 96 Locate
petG gene + 66347 66460 114 Locate
trnW-CCA gene − 66569 66642 74 Locate
trnP-UGG gene − 66812 66885 74 Locate
psaJ gene + 67158 67292 135 Locate
rpl33 gene + 67761 67961 201 Locate
rps18 gene + 68136 68441 306 Locate
rpl20 gene − 68682 69068 387 Locate
rps12 gene − 69865 69978 114 Locate
clpP gene − 70120 72055 1936 Locate
psbB gene + 72509 74035 1527 Locate
psbT gene + 74215 74322 108 Locate
psbN gene − 74383 74514 132 Locate
psbH gene + 74618 74839 222 Locate
petB gene + 74964 76333 1370 Locate
petD gene + 76522 77733 1212 Locate
rpoA gene − 77896 78909 1014 Locate
rps11 gene − 78981 79397 417 Locate
rpl36 gene − 79499 79612 114 Locate
infA gene − 79708 79941 234 Locate
rps8 gene − 80064 80474 411 Locate
rpl14 gene − 80640 81008 369 Locate
rpl16 gene − 81135 82365 1231 Locate
rps3 gene − 82520 83182 663 Locate
rpl22 gene − 83184 83639 456 Locate
rps19 gene − 83699 83977 279 Locate
rpl2 gene − 84034 85516 1483 Locate
rpl23 gene − 85535 85816 282 Locate
trnI-CAU gene − 85976 86049 74 Locate
ycf2 gene + 86138 92947 6810 Locate
ycf15 gene + 93089 93286 198 Locate
trnL-CAA gene − 93547 93627 81 Locate
ndhB gene − 94170 96381 2212 Locate
rps7 gene − 96656 97123 468 Locate
rps12 gene − 97177 97967 791 Locate
trnV-GAC gene + 99540 99611 72 Locate
rrn16 gene + 99834 101324 1491 Locate
trnI-GAU gene + 101623 102641 1019 Locate
trnA-UGC gene + 102706 103590 885 Locate
rrn23 gene + 103760 106571 2812 Locate
rrn4.5 gene + 106670 106772 103 Locate
rrn5 gene + 107020 107140 121 Locate
trnR-ACG gene + 107375 107448 74 Locate
trnN-GUU gene − 108004 108075 72 Locate
ndhF gene − 109152 111392 2241 Locate
rpl32 gene + 111906 112082 177 Locate
trnL-UAG gene + 112517 112596 80 Locate
ccsA gene + 112681 113655 975 Locate
ndhD gene − 113893 115395 1503 Locate
psaC gene − 115529 115774 246 Locate
ndhE gene − 116030 116335 306 Locate
ndhG gene − 116559 117089 531 Locate
ndhI gene − 117438 117938 501 Locate
ndhA gene − 118019 120128 2110 Locate
ndhH gene − 120130 121311 1182 Locate
rps15 gene − 121408 121680 273 Locate
ycf1 gene − 121949 127645 5697 Locate
trnN-GUU gene + 127864 127935 72 Locate
trnR-ACG gene − 128491 128564 74 Locate
rrn5 gene − 128799 128919 121 Locate
rrn4.5 gene − 129167 129269 103 Locate
rrn23 gene − 129368 132179 2812 Locate
trnA-UGC gene − 132349 133233 885 Locate
trnI-GAU gene − 133298 134316 1019 Locate
ycf68 gene − 133868 134161 294 Locate
rrn16 gene − 134615 136105 1491 Locate
trnV-GAC gene − 136328 136399 72 Locate
rps12 gene + 137972 138762 791 Locate
rps7 gene + 138816 139283 468 Locate
ndhB gene + 139558 141769 2212 Locate
trnL-CAA gene + 142312 142392 81 Locate
ycf15 gene − 142653 142850 198 Locate
ycf2 gene − 142992 149801 6810 Locate
trnI-CAU gene + 149890 149963 74 Locate
rpl23 gene + 150123 150404 282 Locate
rpl2 gene + 150423 151905 1483 Locate
Status Available
Accession PQ059208.1
Length 152,002 bp
GC content 38.2%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources