Scutellaria aurata chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ058277.1 · 3–76 bp · −
psbA · PQ058277.1 · 377–1,435 bp · −
trnK-UUU · PQ058277.1 · 1,676–4,219 bp · −
matK · PQ058277.1 · 1,971–3,515 bp · −
rps16 · PQ058277.1 · 5,127–6,261 bp · −
trnQ-UUG · PQ058277.1 · 7,392–7,463 bp · −
trnS-GCU · PQ058277.1 · 8,598–8,685 bp · −
atpA · PQ058277.1 · 10,480–12,003 bp · −
atpF · PQ058277.1 · 12,086–13,317 bp · −
atpH · PQ058277.1 · 13,686–13,931 bp · −
atpI · PQ058277.1 · 14,917–15,660 bp · −
rps2 · PQ058277.1 · 16,006–16,716 bp · −
rpoC2 · PQ058277.1 · 17,011–21,144 bp · −
rpoC1 · PQ058277.1 · 21,290–24,130 bp · −
rpoB · PQ058277.1 · 24,157–27,369 bp · −
psbM · PQ058277.1 · 30,417–30,530 bp · −
trnD-GUC · PQ058277.1 · 31,057–31,130 bp · −
trnY-GUA · PQ058277.1 · 31,244–31,327 bp · −
trnE-UUC · PQ058277.1 · 31,378–31,450 bp · −
trnS-UGA · PQ058277.1 · 36,078–36,169 bp · −
trnfM-CAU · PQ058277.1 · 37,163–37,236 bp · −
rps14 · PQ058277.1 · 37,386–37,688 bp · −
psaB · PQ058277.1 · 37,816–40,020 bp · −
psaA · PQ058277.1 · 40,046–42,298 bp · −
ycf3 · PQ058277.1 · 42,996–44,919 bp · −
rps4 · PQ058277.1 · 46,174–46,779 bp · −
trnT-UGU · PQ058277.1 · 47,122–47,194 bp · −
ndhJ · PQ058277.1 · 49,461–49,937 bp · −
ndhK · PQ058277.1 · 50,045–50,722 bp · −
ndhC · PQ058277.1 · 50,776–51,138 bp · −
trnV-UAC · PQ058277.1 · 51,589–52,242 bp · −
atpE · PQ058277.1 · 52,712–53,113 bp · −
atpB · PQ058277.1 · 53,110–54,615 bp · −
psbJ · PQ058277.1 · 64,372–64,494 bp · −
psbL · PQ058277.1 · 64,628–64,849 bp · −
psbF · PQ058277.1 · 64,768–64,887 bp · −
psbE · PQ058277.1 · 64,902–65,153 bp · −
trnW-CCA · PQ058277.1 · 66,555–66,628 bp · −
trnP-UGG · PQ058277.1 · 66,798–66,871 bp · −
rpl20 · PQ058277.1 · 68,687–69,073 bp · −
rps12 · PQ058277.1 · 69,874–69,987 bp · −
rps12 · PQ058277.1 · 97,209–97,999 bp · −
clpP · PQ058277.1 · 70,129–72,066 bp · −
psbN · PQ058277.1 · 74,415–74,546 bp · −
rpoA · PQ058277.1 · 78,147–78,944 bp · −
rps11 · PQ058277.1 · 79,016–79,432 bp · −
rpl36 · PQ058277.1 · 79,533–79,646 bp · −
infA · PQ058277.1 · 79,742–79,975 bp · −
rps8 · PQ058277.1 · 80,091–80,501 bp · −
rpl14 · PQ058277.1 · 80,671–81,039 bp · −
rpl16 · PQ058277.1 · 81,152–82,407 bp · −
rps3 · PQ058277.1 · 82,562–83,224 bp · −
rpl22 · PQ058277.1 · 83,239–83,682 bp · −
rps19 · PQ058277.1 · 83,742–84,020 bp · −
rpl2 · PQ058277.1 · 84,075–85,557 bp · −
rpl23 · PQ058277.1 · 85,576–85,857 bp · −
trnI-CAU · PQ058277.1 · 86,017–86,090 bp · −
trnL-CAA · PQ058277.1 · 93,588–93,668 bp · −
ndhB · PQ058277.1 · 94,202–96,413 bp · −
rps7 · PQ058277.1 · 96,688–97,155 bp · −
trnN-GUU · PQ058277.1 · 108,047–108,118 bp · −
ndhF · PQ058277.1 · 109,195–111,426 bp · −
ndhD · PQ058277.1 · 113,943–115,472 bp · −
psaC · PQ058277.1 · 115,572–115,817 bp · −
ndhE · PQ058277.1 · 116,056–116,361 bp · −
ndhG · PQ058277.1 · 116,583–117,113 bp · −
ndhI · PQ058277.1 · 117,470–117,970 bp · −
ndhA · PQ058277.1 · 118,051–120,150 bp · −
ndhH · PQ058277.1 · 120,152–121,363 bp · −
rps15 · PQ058277.1 · 121,422–121,772 bp · −
ycf1 · PQ058277.1 · 121,979–127,387 bp · −
trnR-ACG · PQ058277.1 · 128,345–128,418 bp · −
rrn5 · PQ058277.1 · 128,653–128,773 bp · −
rrn4.5 · PQ058277.1 · 129,021–129,123 bp · −
rrn23 · PQ058277.1 · 129,222–132,042 bp · −
trnA-UGC · PQ058277.1 · 132,212–133,099 bp · −
trnI-GAU · PQ058277.1 · 133,164–134,183 bp · −
ycf68 · PQ058277.1 · 133,735–134,028 bp · −
rrn16 · PQ058277.1 · 134,482–135,972 bp · −
trnV-GAC · PQ058277.1 · 136,200–136,271 bp · −
ycf15 · PQ058277.1 · 142,508–142,756 bp · −
ycf2 · PQ058277.1 · 142,847–149,656 bp · −
psbK · PQ058277.1 · 7,788–7,973 bp · +
psbI · PQ058277.1 · 8,368–8,478 bp · +
trnG-UCC · PQ058277.1 · 9,380–10,137 bp · +
trnR-UCU · PQ058277.1 · 10,312–10,383 bp · +
trnC-GCA · PQ058277.1 · 28,532–28,602 bp · +
petN · PQ058277.1 · 29,314–29,403 bp · +
trnT-GGU · PQ058277.1 · 32,014–32,085 bp · +
psbD · PQ058277.1 · 33,397–34,464 bp · +
psbC · PQ058277.1 · 34,412–35,833 bp · +
psbZ · PQ058277.1 · 36,489–36,677 bp · +
trnG-GCC · PQ058277.1 · 36,949–37,019 bp · +
trnS-GGA · PQ058277.1 · 45,802–45,888 bp · +
trnL-UAA · PQ058277.1 · 47,873–48,440 bp · +
trnF-GAA · PQ058277.1 · 48,746–48,818 bp · +
trnM-CAU · PQ058277.1 · 52,431–52,503 bp · +
rbcL · PQ058277.1 · 55,367–56,827 bp · +
accD · PQ058277.1 · 57,548–59,026 bp · +
psaI · PQ058277.1 · 59,738–59,848 bp · +
ycf4 · PQ058277.1 · 60,282–60,836 bp · +
cemA · PQ058277.1 · 61,581–62,180 bp · +
petA · PQ058277.1 · 62,387–63,349 bp · +
petL · PQ058277.1 · 66,052–66,147 bp · +
petG · PQ058277.1 · 66,323–66,436 bp · +
psaJ · PQ058277.1 · 67,080–67,280 bp · +
rpl33 · PQ058277.1 · 67,769–67,969 bp · +
rps18 · PQ058277.1 · 68,145–68,450 bp · +
rps12 · PQ058277.1 · 137,836–138,626 bp · +
psbB · PQ058277.1 · 72,529–74,055 bp · +
psbT · PQ058277.1 · 74,247–74,354 bp · +
psbH · PQ058277.1 · 74,657–74,878 bp · +
petB · PQ058277.1 · 75,004–76,376 bp · +
petD · PQ058277.1 · 76,565–77,771 bp · +
ycf2 · PQ058277.1 · 86,179–92,988 bp · +
ycf15 · PQ058277.1 · 93,079–93,327 bp · +
trnV-GAC · PQ058277.1 · 99,564–99,635 bp · +
rrn16 · PQ058277.1 · 99,863–101,353 bp · +
trnI-GAU · PQ058277.1 · 101,652–102,671 bp · +
trnA-UGC · PQ058277.1 · 102,736–103,623 bp · +
rrn23 · PQ058277.1 · 103,793–106,613 bp · +
rrn4.5 · PQ058277.1 · 106,712–106,814 bp · +
rrn5 · PQ058277.1 · 107,062–107,182 bp · +
trnR-ACG · PQ058277.1 · 107,417–107,490 bp · +
rpl32 · PQ058277.1 · 111,944–112,120 bp · +
trnL-UAG · PQ058277.1 · 112,556–112,635 bp · +
ccsA · PQ058277.1 · 112,735–113,709 bp · +
trnN-GUU · PQ058277.1 · 127,717–127,788 bp · +
rps7 · PQ058277.1 · 138,680–139,147 bp · +
ndhB · PQ058277.1 · 139,422–141,633 bp · +
trnL-CAA · PQ058277.1 · 142,167–142,247 bp · +
trnI-CAU · PQ058277.1 · 149,745–149,818 bp · +
rpl23 · PQ058277.1 · 149,978–150,259 bp · +
rpl2 · PQ058277.1 · 150,278–151,760 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria aurata
ANNOTATED PLASTOME
PQ058277.1
151,855 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37964 75928 113891 151855 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU ycf68 rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 3 76 74 Locate
psbA gene − 377 1435 1059 Locate
trnK-UUU gene − 1676 4219 2544 Locate
matK gene − 1971 3515 1545 Locate
rps16 gene − 5127 6261 1135 Locate
trnQ-UUG gene − 7392 7463 72 Locate
psbK gene + 7788 7973 186 Locate
psbI gene + 8368 8478 111 Locate
trnS-GCU gene − 8598 8685 88 Locate
trnG-UCC gene + 9380 10137 758 Locate
trnR-UCU gene + 10312 10383 72 Locate
atpA gene − 10480 12003 1524 Locate
atpF gene − 12086 13317 1232 Locate
atpH gene − 13686 13931 246 Locate
atpI gene − 14917 15660 744 Locate
rps2 gene − 16006 16716 711 Locate
rpoC2 gene − 17011 21144 4134 Locate
rpoC1 gene − 21290 24130 2841 Locate
rpoB gene − 24157 27369 3213 Locate
trnC-GCA gene + 28532 28602 71 Locate
petN gene + 29314 29403 90 Locate
psbM gene − 30417 30530 114 Locate
trnD-GUC gene − 31057 31130 74 Locate
trnY-GUA gene − 31244 31327 84 Locate
trnE-UUC gene − 31378 31450 73 Locate
trnT-GGU gene + 32014 32085 72 Locate
psbD gene + 33397 34464 1068 Locate
psbC gene + 34412 35833 1422 Locate
trnS-UGA gene − 36078 36169 92 Locate
psbZ gene + 36489 36677 189 Locate
trnG-GCC gene + 36949 37019 71 Locate
trnfM-CAU gene − 37163 37236 74 Locate
rps14 gene − 37386 37688 303 Locate
psaB gene − 37816 40020 2205 Locate
psaA gene − 40046 42298 2253 Locate
ycf3 gene − 42996 44919 1924 Locate
trnS-GGA gene + 45802 45888 87 Locate
rps4 gene − 46174 46779 606 Locate
trnT-UGU gene − 47122 47194 73 Locate
trnL-UAA gene + 47873 48440 568 Locate
trnF-GAA gene + 48746 48818 73 Locate
ndhJ gene − 49461 49937 477 Locate
ndhK gene − 50045 50722 678 Locate
ndhC gene − 50776 51138 363 Locate
trnV-UAC gene − 51589 52242 654 Locate
trnM-CAU gene + 52431 52503 73 Locate
atpE gene − 52712 53113 402 Locate
atpB gene − 53110 54615 1506 Locate
rbcL gene + 55367 56827 1461 Locate
accD gene + 57548 59026 1479 Locate
psaI gene + 59738 59848 111 Locate
ycf4 gene + 60282 60836 555 Locate
cemA gene + 61581 62180 600 Locate
petA gene + 62387 63349 963 Locate
psbJ gene − 64372 64494 123 Locate
psbL gene − 64628 64849 222 Locate
psbF gene − 64768 64887 120 Locate
psbE gene − 64902 65153 252 Locate
petL gene + 66052 66147 96 Locate
petG gene + 66323 66436 114 Locate
trnW-CCA gene − 66555 66628 74 Locate
trnP-UGG gene − 66798 66871 74 Locate
psaJ gene + 67080 67280 201 Locate
rpl33 gene + 67769 67969 201 Locate
rps18 gene + 68145 68450 306 Locate
rpl20 gene − 68687 69073 387 Locate
rps12 gene − 69874 69987 114 Locate
clpP gene − 70129 72066 1938 Locate
psbB gene + 72529 74055 1527 Locate
psbT gene + 74247 74354 108 Locate
psbN gene − 74415 74546 132 Locate
psbH gene + 74657 74878 222 Locate
petB gene + 75004 76376 1373 Locate
petD gene + 76565 77771 1207 Locate
rpoA gene − 78147 78944 798 Locate
rps11 gene − 79016 79432 417 Locate
rpl36 gene − 79533 79646 114 Locate
infA gene − 79742 79975 234 Locate
rps8 gene − 80091 80501 411 Locate
rpl14 gene − 80671 81039 369 Locate
rpl16 gene − 81152 82407 1256 Locate
rps3 gene − 82562 83224 663 Locate
rpl22 gene − 83239 83682 444 Locate
rps19 gene − 83742 84020 279 Locate
rpl2 gene − 84075 85557 1483 Locate
rpl23 gene − 85576 85857 282 Locate
trnI-CAU gene − 86017 86090 74 Locate
ycf2 gene + 86179 92988 6810 Locate
ycf15 gene + 93079 93327 249 Locate
trnL-CAA gene − 93588 93668 81 Locate
ndhB gene − 94202 96413 2212 Locate
rps7 gene − 96688 97155 468 Locate
rps12 gene − 97209 97999 791 Locate
trnV-GAC gene + 99564 99635 72 Locate
rrn16 gene + 99863 101353 1491 Locate
trnI-GAU gene + 101652 102671 1020 Locate
trnA-UGC gene + 102736 103623 888 Locate
rrn23 gene + 103793 106613 2821 Locate
rrn4.5 gene + 106712 106814 103 Locate
rrn5 gene + 107062 107182 121 Locate
trnR-ACG gene + 107417 107490 74 Locate
trnN-GUU gene − 108047 108118 72 Locate
ndhF gene − 109195 111426 2232 Locate
rpl32 gene + 111944 112120 177 Locate
trnL-UAG gene + 112556 112635 80 Locate
ccsA gene + 112735 113709 975 Locate
ndhD gene − 113943 115472 1530 Locate
psaC gene − 115572 115817 246 Locate
ndhE gene − 116056 116361 306 Locate
ndhG gene − 116583 117113 531 Locate
ndhI gene − 117470 117970 501 Locate
ndhA gene − 118051 120150 2100 Locate
ndhH gene − 120152 121363 1212 Locate
rps15 gene − 121422 121772 351 Locate
ycf1 gene − 121979 127387 5409 Locate
trnN-GUU gene + 127717 127788 72 Locate
trnR-ACG gene − 128345 128418 74 Locate
rrn5 gene − 128653 128773 121 Locate
rrn4.5 gene − 129021 129123 103 Locate
rrn23 gene − 129222 132042 2821 Locate
trnA-UGC gene − 132212 133099 888 Locate
trnI-GAU gene − 133164 134183 1020 Locate
ycf68 gene − 133735 134028 294 Locate
rrn16 gene − 134482 135972 1491 Locate
trnV-GAC gene − 136200 136271 72 Locate
rps12 gene + 137836 138626 791 Locate
rps7 gene + 138680 139147 468 Locate
ndhB gene + 139422 141633 2212 Locate
trnL-CAA gene + 142167 142247 81 Locate
ycf15 gene − 142508 142756 249 Locate
ycf2 gene − 142847 149656 6810 Locate
trnI-CAU gene + 149745 149818 74 Locate
rpl23 gene + 149978 150259 282 Locate
rpl2 gene + 150278 151760 1483 Locate
Status Available
Accession PQ058277.1
Length 151,855 bp
GC content 38.5%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources