Scutellaria axilliflora chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ075901.1 · 3–76 bp · −
psbA · PQ075901.1 · 365–1,423 bp · −
trnK-UUU · PQ075901.1 · 1,665–4,253 bp · −
matK · PQ075901.1 · 1,960–3,495 bp · −
rps16 · PQ075901.1 · 5,127–6,299 bp · −
trnQ-UUG · PQ075901.1 · 7,376–7,447 bp · −
trnS-GCU · PQ075901.1 · 8,590–8,677 bp · −
atpA · PQ075901.1 · 10,456–11,979 bp · −
atpF · PQ075901.1 · 12,062–13,289 bp · −
atpH · PQ075901.1 · 13,645–13,890 bp · −
atpI · PQ075901.1 · 14,886–15,629 bp · −
rps2 · PQ075901.1 · 15,978–16,814 bp · −
rpoC2 · PQ075901.1 · 16,905–21,110 bp · −
rpoC1 · PQ075901.1 · 21,265–24,094 bp · −
rpoB · PQ075901.1 · 24,121–27,333 bp · −
psbM · PQ075901.1 · 30,433–30,537 bp · −
trnD-GUC · PQ075901.1 · 31,064–31,137 bp · −
trnY-GUA · PQ075901.1 · 31,251–31,334 bp · −
trnE-UUC · PQ075901.1 · 31,394–31,466 bp · −
trnS-UGA · PQ075901.1 · 36,086–36,177 bp · −
trnfM-CAU · PQ075901.1 · 37,181–37,254 bp · −
rps14 · PQ075901.1 · 37,404–37,706 bp · −
psaB · PQ075901.1 · 37,834–40,038 bp · −
psaA · PQ075901.1 · 40,064–42,316 bp · −
ycf3 · PQ075901.1 · 42,978–44,901 bp · −
rps4 · PQ075901.1 · 46,158–46,763 bp · −
trnT-UGU · PQ075901.1 · 47,089–47,161 bp · −
ndhJ · PQ075901.1 · 49,437–49,913 bp · −
ndhK · PQ075901.1 · 50,021–50,698 bp · −
ndhC · PQ075901.1 · 50,751–51,113 bp · −
trnV-UAC · PQ075901.1 · 51,970–52,622 bp · −
atpE · PQ075901.1 · 53,091–53,492 bp · −
atpB · PQ075901.1 · 53,489–54,976 bp · −
psbJ · PQ075901.1 · 64,601–64,723 bp · −
psbL · PQ075901.1 · 64,857–64,973 bp · −
psbF · PQ075901.1 · 64,997–65,116 bp · −
psbE · PQ075901.1 · 65,131–65,382 bp · −
trnW-CCA · PQ075901.1 · 66,794–66,867 bp · −
trnP-UGG · PQ075901.1 · 67,037–67,110 bp · −
rpl20 · PQ075901.1 · 68,910–69,296 bp · −
rps12 · PQ075901.1 · 70,098–70,211 bp · −
rps12 · PQ075901.1 · 97,433–98,223 bp · −
clpP · PQ075901.1 · 70,354–72,288 bp · −
psbN · PQ075901.1 · 74,648–74,779 bp · −
rpoA · PQ075901.1 · 78,149–79,168 bp · −
rps11 · PQ075901.1 · 79,240–79,656 bp · −
rpl36 · PQ075901.1 · 79,758–79,871 bp · −
infA · PQ075901.1 · 79,967–80,200 bp · −
rps8 · PQ075901.1 · 80,320–80,730 bp · −
rpl14 · PQ075901.1 · 80,900–81,268 bp · −
rpl16 · PQ075901.1 · 81,395–82,628 bp · −
rps3 · PQ075901.1 · 82,783–83,445 bp · −
rpl22 · PQ075901.1 · 83,447–83,902 bp · −
rps19 · PQ075901.1 · 83,962–84,240 bp · −
rpl2 · PQ075901.1 · 84,295–85,777 bp · −
rpl23 · PQ075901.1 · 85,796–86,077 bp · −
trnI-CAU · PQ075901.1 · 86,237–86,310 bp · −
trnL-CAA · PQ075901.1 · 93,803–93,883 bp · −
ndhB · PQ075901.1 · 94,426–96,583 bp · −
rps7 · PQ075901.1 · 96,912–97,379 bp · −
trnN-GUU · PQ075901.1 · 108,265–108,336 bp · −
ndhF · PQ075901.1 · 109,413–111,653 bp · −
ndhD · PQ075901.1 · 114,178–115,680 bp · −
psaC · PQ075901.1 · 115,800–116,045 bp · −
ndhE · PQ075901.1 · 116,302–116,607 bp · −
ndhG · PQ075901.1 · 116,838–117,368 bp · −
ndhI · PQ075901.1 · 117,733–118,233 bp · −
ndhA · PQ075901.1 · 118,314–120,406 bp · −
ndhH · PQ075901.1 · 120,408–121,589 bp · −
rps15 · PQ075901.1 · 121,692–121,964 bp · −
ycf1 · PQ075901.1 · 122,231–127,876 bp · −
trnR-ACG · PQ075901.1 · 128,713–128,786 bp · −
rrn5 · PQ075901.1 · 129,021–129,141 bp · −
rrn4.5 · PQ075901.1 · 129,389–129,491 bp · −
rrn23 · PQ075901.1 · 129,590–132,402 bp · −
trnA-UGC · PQ075901.1 · 132,572–133,457 bp · −
trnI-GAU · PQ075901.1 · 133,522–134,542 bp · −
ycf68 · PQ075901.1 · 134,148–134,387 bp · −
rrn16 · PQ075901.1 · 134,841–136,331 bp · −
trnV-GAC · PQ075901.1 · 136,559–136,630 bp · −
ycf15 · PQ075901.1 · 142,884–143,132 bp · −
ycf2 · PQ075901.1 · 143,223–150,032 bp · −
psbK · PQ075901.1 · 7,772–7,957 bp · +
psbI · PQ075901.1 · 8,357–8,467 bp · +
trnG-UCC · PQ075901.1 · 9,357–10,117 bp · +
trnR-UCU · PQ075901.1 · 10,288–10,359 bp · +
trnC-GCA · PQ075901.1 · 28,503–28,573 bp · +
petN · PQ075901.1 · 29,286–29,375 bp · +
trnT-GGU · PQ075901.1 · 32,042–32,113 bp · +
psbD · PQ075901.1 · 33,420–34,481 bp · +
psbC · PQ075901.1 · 34,429–35,850 bp · +
psbZ · PQ075901.1 · 36,497–36,685 bp · +
trnG-GCC · PQ075901.1 · 36,957–37,027 bp · +
trnS-GGA · PQ075901.1 · 45,786–45,872 bp · +
trnL-UAA · PQ075901.1 · 47,848–48,409 bp · +
trnF-GAA · PQ075901.1 · 48,716–48,788 bp · +
trnM-CAU · PQ075901.1 · 52,803–52,875 bp · +
rbcL · PQ075901.1 · 55,726–57,189 bp · +
accD · PQ075901.1 · 57,923–59,389 bp · +
psaI · PQ075901.1 · 59,963–60,073 bp · +
ycf4 · PQ075901.1 · 60,507–61,061 bp · +
cemA · PQ075901.1 · 61,799–62,398 bp · +
petA · PQ075901.1 · 62,605–63,567 bp · +
petL · PQ075901.1 · 66,291–66,386 bp · +
petG · PQ075901.1 · 66,562–66,675 bp · +
psaJ · PQ075901.1 · 67,383–67,517 bp · +
rpl33 · PQ075901.1 · 67,991–68,191 bp · +
rps18 · PQ075901.1 · 68,367–68,672 bp · +
rps12 · PQ075901.1 · 138,208–138,998 bp · +
psbB · PQ075901.1 · 72,755–74,281 bp · +
psbT · PQ075901.1 · 74,473–74,574 bp · +
psbH · PQ075901.1 · 74,883–75,104 bp · +
petB · PQ075901.1 · 75,229–76,596 bp · +
petD · PQ075901.1 · 76,785–77,986 bp · +
ycf2 · PQ075901.1 · 86,399–93,208 bp · +
ycf15 · PQ075901.1 · 93,299–93,547 bp · +
trnV-GAC · PQ075901.1 · 99,801–99,872 bp · +
rrn16 · PQ075901.1 · 100,100–101,590 bp · +
trnI-GAU · PQ075901.1 · 101,889–102,909 bp · +
trnA-UGC · PQ075901.1 · 102,974–103,859 bp · +
rrn23 · PQ075901.1 · 104,029–106,841 bp · +
rrn4.5 · PQ075901.1 · 106,940–107,042 bp · +
rrn5 · PQ075901.1 · 107,290–107,410 bp · +
trnR-ACG · PQ075901.1 · 107,645–107,718 bp · +
rpl32 · PQ075901.1 · 112,174–112,350 bp · +
trnL-UAG · PQ075901.1 · 112,795–112,874 bp · +
ccsA · PQ075901.1 · 112,971–113,945 bp · +
trnN-GUU · PQ075901.1 · 128,095–128,166 bp · +
rps7 · PQ075901.1 · 139,052–139,519 bp · +
ndhB · PQ075901.1 · 139,848–142,005 bp · +
trnL-CAA · PQ075901.1 · 142,548–142,628 bp · +
trnI-CAU · PQ075901.1 · 150,121–150,194 bp · +
rpl23 · PQ075901.1 · 150,354–150,635 bp · +
rpl2 · PQ075901.1 · 150,654–152,136 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria axilliflora
ANNOTATED PLASTOME
PQ075901.1
152,231 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38058 76116 114173 152231 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU ycf68 rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 3 76 74 Locate
psbA gene − 365 1423 1059 Locate
trnK-UUU gene − 1665 4253 2589 Locate
matK gene − 1960 3495 1536 Locate
rps16 gene − 5127 6299 1173 Locate
trnQ-UUG gene − 7376 7447 72 Locate
psbK gene + 7772 7957 186 Locate
psbI gene + 8357 8467 111 Locate
trnS-GCU gene − 8590 8677 88 Locate
trnG-UCC gene + 9357 10117 761 Locate
trnR-UCU gene + 10288 10359 72 Locate
atpA gene − 10456 11979 1524 Locate
atpF gene − 12062 13289 1228 Locate
atpH gene − 13645 13890 246 Locate
atpI gene − 14886 15629 744 Locate
rps2 gene − 15978 16814 837 Locate
rpoC2 gene − 16905 21110 4206 Locate
rpoC1 gene − 21265 24094 2830 Locate
rpoB gene − 24121 27333 3213 Locate
trnC-GCA gene + 28503 28573 71 Locate
petN gene + 29286 29375 90 Locate
psbM gene − 30433 30537 105 Locate
trnD-GUC gene − 31064 31137 74 Locate
trnY-GUA gene − 31251 31334 84 Locate
trnE-UUC gene − 31394 31466 73 Locate
trnT-GGU gene + 32042 32113 72 Locate
psbD gene + 33420 34481 1062 Locate
psbC gene + 34429 35850 1422 Locate
trnS-UGA gene − 36086 36177 92 Locate
psbZ gene + 36497 36685 189 Locate
trnG-GCC gene + 36957 37027 71 Locate
trnfM-CAU gene − 37181 37254 74 Locate
rps14 gene − 37404 37706 303 Locate
psaB gene − 37834 40038 2205 Locate
psaA gene − 40064 42316 2253 Locate
ycf3 gene − 42978 44901 1924 Locate
trnS-GGA gene + 45786 45872 87 Locate
rps4 gene − 46158 46763 606 Locate
trnT-UGU gene − 47089 47161 73 Locate
trnL-UAA gene + 47848 48409 562 Locate
trnF-GAA gene + 48716 48788 73 Locate
ndhJ gene − 49437 49913 477 Locate
ndhK gene − 50021 50698 678 Locate
ndhC gene − 50751 51113 363 Locate
trnV-UAC gene − 51970 52622 653 Locate
trnM-CAU gene + 52803 52875 73 Locate
atpE gene − 53091 53492 402 Locate
atpB gene − 53489 54976 1488 Locate
rbcL gene + 55726 57189 1464 Locate
accD gene + 57923 59389 1467 Locate
psaI gene + 59963 60073 111 Locate
ycf4 gene + 60507 61061 555 Locate
cemA gene + 61799 62398 600 Locate
petA gene + 62605 63567 963 Locate
psbJ gene − 64601 64723 123 Locate
psbL gene − 64857 64973 117 Locate
psbF gene − 64997 65116 120 Locate
psbE gene − 65131 65382 252 Locate
petL gene + 66291 66386 96 Locate
petG gene + 66562 66675 114 Locate
trnW-CCA gene − 66794 66867 74 Locate
trnP-UGG gene − 67037 67110 74 Locate
psaJ gene + 67383 67517 135 Locate
rpl33 gene + 67991 68191 201 Locate
rps18 gene + 68367 68672 306 Locate
rpl20 gene − 68910 69296 387 Locate
rps12 gene − 70098 70211 114 Locate
clpP gene − 70354 72288 1935 Locate
psbB gene + 72755 74281 1527 Locate
psbT gene + 74473 74574 102 Locate
psbN gene − 74648 74779 132 Locate
psbH gene + 74883 75104 222 Locate
petB gene + 75229 76596 1368 Locate
petD gene + 76785 77986 1202 Locate
rpoA gene − 78149 79168 1020 Locate
rps11 gene − 79240 79656 417 Locate
rpl36 gene − 79758 79871 114 Locate
infA gene − 79967 80200 234 Locate
rps8 gene − 80320 80730 411 Locate
rpl14 gene − 80900 81268 369 Locate
rpl16 gene − 81395 82628 1234 Locate
rps3 gene − 82783 83445 663 Locate
rpl22 gene − 83447 83902 456 Locate
rps19 gene − 83962 84240 279 Locate
rpl2 gene − 84295 85777 1483 Locate
rpl23 gene − 85796 86077 282 Locate
trnI-CAU gene − 86237 86310 74 Locate
ycf2 gene + 86399 93208 6810 Locate
ycf15 gene + 93299 93547 249 Locate
trnL-CAA gene − 93803 93883 81 Locate
ndhB gene − 94426 96583 2158 Locate
rps7 gene − 96912 97379 468 Locate
rps12 gene − 97433 98223 791 Locate
trnV-GAC gene + 99801 99872 72 Locate
rrn16 gene + 100100 101590 1491 Locate
trnI-GAU gene + 101889 102909 1021 Locate
trnA-UGC gene + 102974 103859 886 Locate
rrn23 gene + 104029 106841 2813 Locate
rrn4.5 gene + 106940 107042 103 Locate
rrn5 gene + 107290 107410 121 Locate
trnR-ACG gene + 107645 107718 74 Locate
trnN-GUU gene − 108265 108336 72 Locate
ndhF gene − 109413 111653 2241 Locate
rpl32 gene + 112174 112350 177 Locate
trnL-UAG gene + 112795 112874 80 Locate
ccsA gene + 112971 113945 975 Locate
ndhD gene − 114178 115680 1503 Locate
psaC gene − 115800 116045 246 Locate
ndhE gene − 116302 116607 306 Locate
ndhG gene − 116838 117368 531 Locate
ndhI gene − 117733 118233 501 Locate
ndhA gene − 118314 120406 2093 Locate
ndhH gene − 120408 121589 1182 Locate
rps15 gene − 121692 121964 273 Locate
ycf1 gene − 122231 127876 5646 Locate
trnN-GUU gene + 128095 128166 72 Locate
trnR-ACG gene − 128713 128786 74 Locate
rrn5 gene − 129021 129141 121 Locate
rrn4.5 gene − 129389 129491 103 Locate
rrn23 gene − 129590 132402 2813 Locate
trnA-UGC gene − 132572 133457 886 Locate
trnI-GAU gene − 133522 134542 1021 Locate
ycf68 gene − 134148 134387 240 Locate
rrn16 gene − 134841 136331 1491 Locate
trnV-GAC gene − 136559 136630 72 Locate
rps12 gene + 138208 138998 791 Locate
rps7 gene + 139052 139519 468 Locate
ndhB gene + 139848 142005 2158 Locate
trnL-CAA gene + 142548 142628 81 Locate
ycf15 gene − 142884 143132 249 Locate
ycf2 gene − 143223 150032 6810 Locate
trnI-CAU gene + 150121 150194 74 Locate
rpl23 gene + 150354 150635 282 Locate
rpl2 gene + 150654 152136 1483 Locate
Status Available
Accession PQ075901.1
Length 152,231 bp
GC content 38.3%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources