Scutellaria baicalensis chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
SSC
IR
trnH-GUG · NC_027262.1 · 179–252 bp · −
psbA · NC_027262.1 · 555–1,613 bp · −
trnK-UUU · NC_027262.1 · 1,858–4,431 bp · −
matK · NC_027262.1 · 2,120–3,676 bp · −
rps16 · NC_027262.1 · 4,966–6,137 bp · −
trnQ-UUG · NC_027262.1 · 7,120–7,191 bp · −
trnS-GCU · NC_027262.1 · 8,439–8,526 bp · −
atpA · NC_027262.1 · 10,286–11,809 bp · −
atpF · NC_027262.1 · 11,900–13,136 bp · −
atpH · NC_027262.1 · 13,499–13,744 bp · −
atpI · NC_027262.1 · 14,715–15,458 bp · −
rps2 · NC_027262.1 · 15,686–16,396 bp · −
rpoC2 · NC_027262.1 · 16,610–20,815 bp · −
rpoC1 · NC_027262.1 · 20,970–23,829 bp · −
rpoB · NC_027262.1 · 23,835–27,047 bp · −
psbM · NC_027262.1 · 29,578–29,682 bp · −
trnD-GUC · NC_027262.1 · 30,209–30,282 bp · −
trnY-GUA · NC_027262.1 · 30,401–30,484 bp · −
trnS-UGA · NC_027262.1 · 35,375–35,466 bp · −
trnfM-CAU · NC_027262.1 · 36,502–36,575 bp · −
rps14 · NC_027262.1 · 36,725–37,027 bp · −
psaB · NC_027262.1 · 37,155–39,359 bp · −
psaA · NC_027262.1 · 39,385–41,637 bp · −
ycf3 · NC_027262.1 · 42,430–44,356 bp · −
rps4 · NC_027262.1 · 45,589–46,194 bp · −
trnT-UGU · NC_027262.1 · 46,585–46,657 bp · −
ndhJ · NC_027262.1 · 48,840–49,316 bp · −
ndhK · NC_027262.1 · 49,425–50,102 bp · −
ndhC · NC_027262.1 · 50,155–50,517 bp · −
trnV-UAC · NC_027262.1 · 51,478–52,130 bp · −
atpE · NC_027262.1 · 52,600–53,001 bp · −
atpB · NC_027262.1 · 52,998–54,494 bp · −
psbJ · NC_027262.1 · 63,930–64,052 bp · −
psbL · NC_027262.1 · 64,186–64,302 bp · −
psbF · NC_027262.1 · 64,326–64,445 bp · −
psbE · NC_027262.1 · 64,460–64,711 bp · −
trnW-CCA · NC_027262.1 · 66,020–66,093 bp · −
trnP-UGG · NC_027262.1 · 66,263–66,336 bp · −
rpl20 · NC_027262.1 · 68,182–68,568 bp · −
rps12 · NC_027262.1 · 69,355–69,480 bp · −
rps12 · NC_027262.1 · 96,833–97,623 bp · −
clpP · NC_027262.1 · 69,622–71,562 bp · −
psbN · NC_027262.1 · 73,906–74,037 bp · −
rpoA · NC_027262.1 · 77,360–78,373 bp · −
rps11 · NC_027262.1 · 78,445–78,861 bp · −
rpl36 · NC_027262.1 · 78,963–79,076 bp · −
infA · NC_027262.1 · 79,171–79,404 bp · −
rps8 · NC_027262.1 · 79,528–79,938 bp · −
rpl14 · NC_027262.1 · 80,125–80,493 bp · −
rpl16 · NC_027262.1 · 80,620–81,929 bp · −
rps3 · NC_027262.1 · 82,061–82,723 bp · −
rpl22 · NC_027262.1 · 82,725–83,180 bp · −
rps19 · NC_027262.1 · 83,240–83,575 bp · −
rpl2 · NC_027262.1 · 83,632–85,113 bp · −
rpl23 · NC_027262.1 · 85,132–85,413 bp · −
trnI-CAU · NC_027262.1 · 85,573–85,646 bp · −
trnL-CAA · NC_027262.1 · 93,203–93,283 bp · −
ndhB · NC_027262.1 · 93,826–96,037 bp · −
rps7 · NC_027262.1 · 96,312–96,779 bp · −
trnN-GUU · NC_027262.1 · 107,690–107,761 bp · −
ndhF · NC_027262.1 · 109,065–111,311 bp · −
ndhD · NC_027262.1 · 113,972–115,501 bp · −
psaC · NC_027262.1 · 115,602–115,847 bp · −
ndhE · NC_027262.1 · 116,103–116,408 bp · −
ndhG · NC_027262.1 · 116,630–117,160 bp · −
ndhI · NC_027262.1 · 117,531–118,031 bp · −
ndhA · NC_027262.1 · 118,112–120,225 bp · −
ndhH · NC_027262.1 · 120,227–121,408 bp · −
rps15 · NC_027262.1 · 121,505–121,777 bp · −
ycf1 · NC_027262.1 · 122,194–127,731 bp · −
trnR-ACG · NC_027262.1 · 128,689–128,762 bp · −
rrn5 · NC_027262.1 · 128,997–129,117 bp · −
rrn4.5 · NC_027262.1 · 129,365–129,467 bp · −
rrn23 · NC_027262.1 · 129,566–132,377 bp · −
trnA-UGC · NC_027262.1 · 132,547–133,428 bp · −
trnI-GAU · NC_027262.1 · 133,493–134,512 bp · −
rrn16 · NC_027262.1 · 134,811–136,301 bp · −
trnV-GAC · NC_027262.1 · 136,528–136,599 bp · −
ycf15 · NC_027262.1 · 142,879–143,127 bp · −
ycf2 · NC_027262.1 · 143,218–150,087 bp · −
psbK · NC_027262.1 · 7,576–7,761 bp · +
psbI · NC_027262.1 · 8,141–8,251 bp · +
trnG-UCC · NC_027262.1 · 9,154–9,906 bp · +
trnR-UCU · NC_027262.1 · 10,118–10,189 bp · +
trnC-GCA · NC_027262.1 · 28,209–28,279 bp · +
petN · NC_027262.1 · 28,487–28,576 bp · +
trnT-GGU · NC_027262.1 · 31,185–31,256 bp · +
psbD · NC_027262.1 · 32,710–33,771 bp · +
psbC · NC_027262.1 · 33,719–35,140 bp · +
psbZ · NC_027262.1 · 35,783–35,971 bp · +
trnG-GCC · NC_027262.1 · 36,247–36,317 bp · +
trnS-GGA · NC_027262.1 · 45,221–45,307 bp · +
trnL-UAA · NC_027262.1 · 47,348–47,923 bp · +
trnF-GAA · NC_027262.1 · 48,232–48,304 bp · +
trnM-CAU · NC_027262.1 · 52,319–52,391 bp · +
rbcL · NC_027262.1 · 55,262–56,713 bp · +
accD · NC_027262.1 · 57,420–58,898 bp · +
psaI · NC_027262.1 · 59,368–59,478 bp · +
ycf4 · NC_027262.1 · 59,912–60,466 bp · +
cemA · NC_027262.1 · 61,012–61,701 bp · +
petA · NC_027262.1 · 61,903–62,865 bp · +
petL · NC_027262.1 · 65,517–65,612 bp · +
petG · NC_027262.1 · 65,788–65,901 bp · +
psaJ · NC_027262.1 · 66,657–66,791 bp · +
rpl33 · NC_027262.1 · 67,267–67,467 bp · +
rps18 · NC_027262.1 · 67,642–67,947 bp · +
rps12 · NC_027262.1 · 138,199–138,989 bp · +
psbB · NC_027262.1 · 72,020–73,546 bp · +
psbT · NC_027262.1 · 73,738–73,845 bp · +
psbH · NC_027262.1 · 74,141–74,362 bp · +
petB · NC_027262.1 · 74,487–75,857 bp · +
petD · NC_027262.1 · 76,046–77,197 bp · +
ycf2 · NC_027262.1 · 85,735–92,604 bp · +
ycf15 · NC_027262.1 · 92,695–92,943 bp · +
trnV-GAC · NC_027262.1 · 99,223–99,294 bp · +
rrn16 · NC_027262.1 · 99,521–101,011 bp · +
trnI-GAU · NC_027262.1 · 101,310–102,329 bp · +
trnA-UGC · NC_027262.1 · 102,394–103,275 bp · +
rrn23 · NC_027262.1 · 103,445–106,256 bp · +
rrn4.5 · NC_027262.1 · 106,355–106,457 bp · +
rrn5 · NC_027262.1 · 106,705–106,825 bp · +
trnR-ACG · NC_027262.1 · 107,060–107,133 bp · +
rpl32 · NC_027262.1 · 111,772–111,948 bp · +
trnL-UAG · NC_027262.1 · 112,572–112,651 bp · +
ccsA · NC_027262.1 · 112,748–113,722 bp · +
trnN-GUU · NC_027262.1 · 128,061–128,132 bp · +
rps7 · NC_027262.1 · 139,043–139,510 bp · +
ndhB · NC_027262.1 · 139,785–141,996 bp · +
trnL-CAA · NC_027262.1 · 142,539–142,619 bp · +
trnI-CAU · NC_027262.1 · 150,176–150,249 bp · +
rpl23 · NC_027262.1 · 150,409–150,690 bp · +
rpl2 · NC_027262.1 · 150,709–152,190 bp · +
rps19 · NC_027262.1 · 152,247–152,303 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria baicalensis
ANNOTATED PLASTOME
NC_027262.1
152,731 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38183 76366 114548 152731 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2 rps19
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 179 252 74 Locate
psbA gene − 555 1613 1059 Locate
trnK-UUU gene − 1858 4431 2574 Locate
matK gene − 2120 3676 1557 Locate
rps16 gene − 4966 6137 1172 Locate
trnQ-UUG gene − 7120 7191 72 Locate
psbK gene + 7576 7761 186 Locate
psbI gene + 8141 8251 111 Locate
trnS-GCU gene − 8439 8526 88 Locate
trnG-UCC gene + 9154 9906 753 Locate
trnR-UCU gene + 10118 10189 72 Locate
atpA gene − 10286 11809 1524 Locate
atpF gene − 11900 13136 1237 Locate
atpH gene − 13499 13744 246 Locate
atpI gene − 14715 15458 744 Locate
rps2 gene − 15686 16396 711 Locate
rpoC2 gene − 16610 20815 4206 Locate
rpoC1 gene − 20970 23829 2860 Locate
rpoB gene − 23835 27047 3213 Locate
trnC-GCA gene + 28209 28279 71 Locate
petN gene + 28487 28576 90 Locate
psbM gene − 29578 29682 105 Locate
trnD-GUC gene − 30209 30282 74 Locate
trnY-GUA gene − 30401 30484 84 Locate
trnT-GGU gene + 31185 31256 72 Locate
psbD gene + 32710 33771 1062 Locate
psbC gene + 33719 35140 1422 Locate
trnS-UGA gene − 35375 35466 92 Locate
psbZ gene + 35783 35971 189 Locate
trnG-GCC gene + 36247 36317 71 Locate
trnfM-CAU gene − 36502 36575 74 Locate
rps14 gene − 36725 37027 303 Locate
psaB gene − 37155 39359 2205 Locate
psaA gene − 39385 41637 2253 Locate
ycf3 gene − 42430 44356 1927 Locate
trnS-GGA gene + 45221 45307 87 Locate
rps4 gene − 45589 46194 606 Locate
trnT-UGU gene − 46585 46657 73 Locate
trnL-UAA gene + 47348 47923 576 Locate
trnF-GAA gene + 48232 48304 73 Locate
ndhJ gene − 48840 49316 477 Locate
ndhK gene − 49425 50102 678 Locate
ndhC gene − 50155 50517 363 Locate
trnV-UAC gene − 51478 52130 653 Locate
trnM-CAU gene + 52319 52391 73 Locate
atpE gene − 52600 53001 402 Locate
atpB gene − 52998 54494 1497 Locate
rbcL gene + 55262 56713 1452 Locate
accD gene + 57420 58898 1479 Locate
psaI gene + 59368 59478 111 Locate
ycf4 gene + 59912 60466 555 Locate
cemA gene + 61012 61701 690 Locate
petA gene + 61903 62865 963 Locate
psbJ gene − 63930 64052 123 Locate
psbL gene − 64186 64302 117 Locate
psbF gene − 64326 64445 120 Locate
psbE gene − 64460 64711 252 Locate
petL gene + 65517 65612 96 Locate
petG gene + 65788 65901 114 Locate
trnW-CCA gene − 66020 66093 74 Locate
trnP-UGG gene − 66263 66336 74 Locate
psaJ gene + 66657 66791 135 Locate
rpl33 gene + 67267 67467 201 Locate
rps18 gene + 67642 67947 306 Locate
rpl20 gene − 68182 68568 387 Locate
rps12 gene − 69355 69480 126 Locate
clpP gene − 69622 71562 1941 Locate
psbB gene + 72020 73546 1527 Locate
psbT gene + 73738 73845 108 Locate
psbN gene − 73906 74037 132 Locate
psbH gene + 74141 74362 222 Locate
petB gene + 74487 75857 1371 Locate
petD gene + 76046 77197 1152 Locate
rpoA gene − 77360 78373 1014 Locate
rps11 gene − 78445 78861 417 Locate
rpl36 gene − 78963 79076 114 Locate
infA gene − 79171 79404 234 Locate
rps8 gene − 79528 79938 411 Locate
rpl14 gene − 80125 80493 369 Locate
rpl16 gene − 80620 81929 1310 Locate
rps3 gene − 82061 82723 663 Locate
rpl22 gene − 82725 83180 456 Locate
rps19 gene − 83240 83575 336 Locate
rpl2 gene − 83632 85113 1482 Locate
rpl23 gene − 85132 85413 282 Locate
trnI-CAU gene − 85573 85646 74 Locate
ycf2 gene + 85735 92604 6870 Locate
ycf15 gene + 92695 92943 249 Locate
trnL-CAA gene − 93203 93283 81 Locate
ndhB gene − 93826 96037 2212 Locate
rps7 gene − 96312 96779 468 Locate
rps12 gene − 96833 97623 791 Locate
trnV-GAC gene + 99223 99294 72 Locate
rrn16 gene + 99521 101011 1491 Locate
trnI-GAU gene + 101310 102329 1020 Locate
trnA-UGC gene + 102394 103275 882 Locate
rrn23 gene + 103445 106256 2812 Locate
rrn4.5 gene + 106355 106457 103 Locate
rrn5 gene + 106705 106825 121 Locate
trnR-ACG gene + 107060 107133 74 Locate
trnN-GUU gene − 107690 107761 72 Locate
ndhF gene − 109065 111311 2247 Locate
rpl32 gene + 111772 111948 177 Locate
trnL-UAG gene + 112572 112651 80 Locate
ccsA gene + 112748 113722 975 Locate
ndhD gene − 113972 115501 1530 Locate
psaC gene − 115602 115847 246 Locate
ndhE gene − 116103 116408 306 Locate
ndhG gene − 116630 117160 531 Locate
ndhI gene − 117531 118031 501 Locate
ndhA gene − 118112 120225 2114 Locate
ndhH gene − 120227 121408 1182 Locate
rps15 gene − 121505 121777 273 Locate
ycf1 gene − 122194 127731 5538 Locate
trnN-GUU gene + 128061 128132 72 Locate
trnR-ACG gene − 128689 128762 74 Locate
rrn5 gene − 128997 129117 121 Locate
rrn4.5 gene − 129365 129467 103 Locate
rrn23 gene − 129566 132377 2812 Locate
trnA-UGC gene − 132547 133428 882 Locate
trnI-GAU gene − 133493 134512 1020 Locate
rrn16 gene − 134811 136301 1491 Locate
trnV-GAC gene − 136528 136599 72 Locate
rps12 gene + 138199 138989 791 Locate
rps7 gene + 139043 139510 468 Locate
ndhB gene + 139785 141996 2212 Locate
trnL-CAA gene + 142539 142619 81 Locate
ycf15 gene − 142879 143127 249 Locate
ycf2 gene − 143218 150087 6870 Locate
trnI-CAU gene + 150176 150249 74 Locate
rpl23 gene + 150409 150690 282 Locate
rpl2 gene + 150709 152190 1482 Locate
rps19 gene + 152247 152303 57 Locate
Status Available
Accession NC_027262.1
Length 152,731 bp
GC content 38.4%
Annotated genes 132
Gene sequence records 8
Translation Rna 36 Photosystem Ii 15 Other 14 Ribosomal Protein 27 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 57
Direct 14
Inverted 6
Palindromic 5
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources