Scutellaria bolanderi chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
SSC
IR
trnH-GUG · MW420972.1 · 3–76 bp · −
psbA · MW420972.1 · 364–1,422 bp · −
trnK-UUU · MW420972.1 · 1,667–4,255 bp · −
matK · MW420972.1 · 1,958–3,493 bp · −
rps16 · MW420972.1 · 5,150–6,318 bp · −
trnQ-UUC · MW420972.1 · 7,439–7,510 bp · −
trnS-GCU · MW420972.1 · 8,637–8,724 bp · −
atpA · MW420972.1 · 10,499–12,022 bp · −
atpF · MW420972.1 · 12,096–13,322 bp · −
atpH · MW420972.1 · 13,688–13,933 bp · −
atpI · MW420972.1 · 14,922–15,665 bp · −
rps2 · MW420972.1 · 16,015–16,725 bp · −
rpoC2 · MW420972.1 · 16,942–21,147 bp · −
rpoC1 · MW420972.1 · 21,302–24,131 bp · −
rpoB · MW420972.1 · 24,158–27,370 bp · −
psbM · MW420972.1 · 30,417–30,521 bp · −
trnD-GUC · MW420972.1 · 31,047–31,120 bp · −
trnY-GUA · MW420972.1 · 31,234–31,317 bp · −
trnE-UUC · MW420972.1 · 31,377–31,449 bp · −
trnS-UCA · MW420972.1 · 36,080–36,172 bp · −
trnfM-CAU · MW420972.1 · 37,177–37,250 bp · −
rps14 · MW420972.1 · 37,400–37,702 bp · −
psaB · MW420972.1 · 37,828–40,032 bp · −
psaA · MW420972.1 · 40,058–42,310 bp · −
ycf3 · MW420972.1 · 42,985–44,897 bp · −
rps4 · MW420972.1 · 46,157–46,762 bp · −
trnT-UGU · MW420972.1 · 47,101–47,173 bp · −
ndhJ · MW420972.1 · 49,403–49,879 bp · −
ndhK · MW420972.1 · 49,988–50,665 bp · −
ndhC · MW420972.1 · 50,718–51,080 bp · −
trnV-UAC · MW420972.1 · 52,072–52,724 bp · −
atpE · MW420972.1 · 53,187–53,588 bp · −
atpB · MW420972.1 · 53,585–55,072 bp · −
pabJ · MW420972.1 · 64,841–64,963 bp · −
psbL · MW420972.1 · 65,097–65,213 bp · −
psbF · MW420972.1 · 65,237–65,356 bp · −
psbE · MW420972.1 · 65,371–65,622 bp · −
trnW-CCA · MW420972.1 · 67,033–67,106 bp · −
trnP-UGG · MW420972.1 · 67,276–67,349 bp · −
rpl20 · MW420972.1 · 69,145–69,531 bp · −
rps12 · MW420972.1 · 70,316–70,441 bp · −
rps12 · MW420972.1 · 97,672–98,462 bp · −
clpP · MW420972.1 · 70,584–72,515 bp · −
psbN · MW420972.1 · 74,882–75,013 bp · −
rpoA · MW420972.1 · 78,384–79,397 bp · −
rps11 · MW420972.1 · 79,469–79,885 bp · −
rpl36 · MW420972.1 · 79,987–80,100 bp · −
infA · MW420972.1 · 80,196–80,429 bp · −
rps8 · MW420972.1 · 80,549–80,959 bp · −
rpl14 · MW420972.1 · 81,128–81,496 bp · −
rpl16 · MW420972.1 · 81,623–82,867 bp · −
rps3 · MW420972.1 · 83,022–83,684 bp · −
rpl22 · MW420972.1 · 83,686–84,141 bp · −
rps19 · MW420972.1 · 84,201–84,479 bp · −
rpl2 · MW420972.1 · 84,534–86,016 bp · −
rpl23 · MW420972.1 · 86,035–86,316 bp · −
trnI-CAU · MW420972.1 · 86,476–86,549 bp · −
trnL-CAA · MW420972.1 · 94,042–94,122 bp · −
ndhB · MW420972.1 · 94,665–96,876 bp · −
rps7 · MW420972.1 · 97,151–97,618 bp · −
ndhF · MW420972.1 · 109,656–111,896 bp · −
ndhD · MW420972.1 · 114,399–115,919 bp · −
psaC · MW420972.1 · 116,021–116,266 bp · −
ndhE · MW420972.1 · 116,523–116,828 bp · −
ndhG · MW420972.1 · 117,038–117,568 bp · −
ndhI · MW420972.1 · 117,942–118,433 bp · −
ndhA · MW420972.1 · 118,514–120,606 bp · −
ndhH · MW420972.1 · 120,608–121,789 bp · −
rps15 · MW420972.1 · 121,892–122,164 bp · −
ycf1 · MW420972.1 · 122,432–127,840 bp · −
trnR-ACG · MW420972.1 · 128,789–128,862 bp · −
rrn5 · MW420972.1 · 129,097–129,217 bp · −
rrn4.5 · MW420972.1 · 129,465–129,567 bp · −
rrn23 · MW420972.1 · 129,666–132,478 bp · −
trnA-UGC · MW420972.1 · 132,648–133,530 bp · −
trnI-GAU · MW420972.1 · 133,596–134,615 bp · −
rrn16 · MW420972.1 · 134,914–136,404 bp · −
trnV-GAC · MW420972.1 · 136,632–136,703 bp · −
ycf15 · MW420972.1 · 142,963–143,160 bp · −
ycf2 · MW420972.1 · 143,302–150,111 bp · −
psbK · MW420972.1 · 7,835–8,020 bp · +
psbI · MW420972.1 · 8,411–8,521 bp · +
trnG-CGA · MW420972.1 · 9,396–10,156 bp · +
trnR-UCU · MW420972.1 · 10,331–10,402 bp · +
trnC-GCA · MW420972.1 · 28,532–28,602 bp · +
petN · MW420972.1 · 29,332–29,421 bp · +
trnT-GGU · MW420972.1 · 32,032–32,103 bp · +
psbD · MW420972.1 · 33,407–34,468 bp · +
psbC · MW420972.1 · 34,416–35,837 bp · +
psbZ · MW420972.1 · 36,493–36,681 bp · +
trnG-GCC · MW420972.1 · 36,953–37,023 bp · +
trnS-GGA · MW420972.1 · 45,785–45,871 bp · +
trnL-UAA · MW420972.1 · 47,803–48,371 bp · +
trnF-GAA · MW420972.1 · 48,676–48,748 bp · +
trnM-CAU · MW420972.1 · 52,905–52,977 bp · +
rbcL · MW420972.1 · 55,858–57,300 bp · +
accD · MW420972.1 · 58,030–59,496 bp · +
psaI · MW420972.1 · 60,213–60,323 bp · +
ycf4 · MW420972.1 · 60,749–61,303 bp · +
cemA · MW420972.1 · 61,989–62,648 bp · +
petA · MW420972.1 · 62,855–63,817 bp · +
petL · MW420972.1 · 66,530–66,625 bp · +
petG · MW420972.1 · 66,801–66,914 bp · +
psbJ · MW420972.1 · 67,622–67,756 bp · +
rpl33 · MW420972.1 · 68,228–68,428 bp · +
rps18 · MW420972.1 · 68,603–68,908 bp · +
rps12 · MW420972.1 · 138,287–139,077 bp · +
psbB · MW420972.1 · 72,989–74,515 bp · +
psbT · MW420972.1 · 74,707–74,808 bp · +
psbH · MW420972.1 · 75,117–75,338 bp · +
petB · MW420972.1 · 75,463–76,831 bp · +
petD · MW420972.1 · 77,020–78,221 bp · +
ycf2 · MW420972.1 · 86,638–93,447 bp · +
ycf15 · MW420972.1 · 93,589–93,786 bp · +
trnV-GAC · MW420972.1 · 100,046–100,117 bp · +
rrn16 · MW420972.1 · 100,345–101,835 bp · +
trnI-GAU · MW420972.1 · 102,134–103,153 bp · +
trnA-UGC · MW420972.1 · 103,219–104,101 bp · +
rrn23 · MW420972.1 · 104,271–107,083 bp · +
rrn4.5 · MW420972.1 · 107,182–107,284 bp · +
rrn5 · MW420972.1 · 107,532–107,652 bp · +
trnR-ACG · MW420972.1 · 107,887–107,960 bp · +
trnN-GUU · MW420972.1 · 108,508–108,579 bp · +
rpl32 · MW420972.1 · 112,413–112,589 bp · +
trnL-UAG · MW420972.1 · 113,016–113,095 bp · +
ccsA · MW420972.1 · 113,192–114,166 bp · +
trnN-GUU · MW420972.1 · 128,170–128,241 bp · +
rps7 · MW420972.1 · 139,131–139,598 bp · +
ndhB · MW420972.1 · 139,873–142,084 bp · +
trnL-CAA · MW420972.1 · 142,627–142,707 bp · +
trnI-CAU · MW420972.1 · 150,200–150,273 bp · +
rpl23 · MW420972.1 · 150,433–150,714 bp · +
rpl2 · MW420972.1 · 150,733–152,215 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria bolanderi
ANNOTATED PLASTOME
MW420972.1
152,310 bp · 132 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38078 76155 114232 152310 bp
Forward strand 5′ → 3′
psbK psbI trnG-CGA trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psbJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG trnN-GUU rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUC trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UCA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB pabJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
133 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 3 76 74 Locate
psbA gene − 364 1422 1059 Locate
trnK-UUU gene − 1667 4255 2589 Locate
matK gene − 1958 3493 1536 Locate
rps16 gene − 5150 6318 1169 Locate
trnQ-UUC gene − 7439 7510 72 Locate
psbK gene + 7835 8020 186 Locate
psbI gene + 8411 8521 111 Locate
trnS-GCU gene − 8637 8724 88 Locate
trnG-CGA gene + 9396 10156 761 Locate
trnR-UCU gene + 10331 10402 72 Locate
atpA gene − 10499 12022 1524 Locate
atpF gene − 12096 13322 1227 Locate
atpH gene − 13688 13933 246 Locate
atpI gene − 14922 15665 744 Locate
rps2 gene − 16015 16725 711 Locate
rpoC2 gene − 16942 21147 4206 Locate
rpoC1 gene − 21302 24131 2830 Locate
rpoB gene − 24158 27370 3213 Locate
trnC-GCA gene + 28532 28602 71 Locate
petN gene + 29332 29421 90 Locate
psbM gene − 30417 30521 105 Locate
trnD-GUC gene − 31047 31120 74 Locate
trnY-GUA gene − 31234 31317 84 Locate
trnE-UUC gene − 31377 31449 73 Locate
trnT-GGU gene + 32032 32103 72 Locate
psbD gene + 33407 34468 1062 Locate
psbC gene + 34416 35837 1422 Locate
trnS-UCA gene − 36080 36172 93 Locate
psbZ gene + 36493 36681 189 Locate
trnG-GCC gene + 36953 37023 71 Locate
trnfM-CAU gene − 37177 37250 74 Locate
rps14 gene − 37400 37702 303 Locate
psaB gene − 37828 40032 2205 Locate
psaA gene − 40058 42310 2253 Locate
ycf3 gene − 42985 44897 1913 Locate
trnS-GGA gene + 45785 45871 87 Locate
rps4 gene − 46157 46762 606 Locate
trnT-UGU gene − 47101 47173 73 Locate
trnL-UAA gene + 47803 48371 569 Locate
trnF-GAA gene + 48676 48748 73 Locate
ndhJ gene − 49403 49879 477 Locate
ndhK gene − 49988 50665 678 Locate
ndhC gene − 50718 51080 363 Locate
trnV-UAC gene − 52072 52724 653 Locate
trnM-CAU gene + 52905 52977 73 Locate
atpE gene − 53187 53588 402 Locate
atpB gene − 53585 55072 1488 Locate
rbcL gene + 55858 57300 1443 Locate
accD gene + 58030 59496 1467 Locate
psaI gene + 60213 60323 111 Locate
ycf4 gene + 60749 61303 555 Locate
cemA gene + 61989 62648 660 Locate
petA gene + 62855 63817 963 Locate
pabJ gene − 64841 64963 123 Locate
psbL gene − 65097 65213 117 Locate
psbF gene − 65237 65356 120 Locate
psbE gene − 65371 65622 252 Locate
petL gene + 66530 66625 96 Locate
petG gene + 66801 66914 114 Locate
trnW-CCA gene − 67033 67106 74 Locate
trnP-UGG gene − 67276 67349 74 Locate
psbJ gene + 67622 67756 135 Locate
rpl33 gene + 68228 68428 201 Locate
rps18 gene + 68603 68908 306 Locate
rpl20 gene − 69145 69531 387 Locate
rps12 gene − 70316 70441 126 Locate
clpP gene − 70584 72515 1932 Locate
psbB gene + 72989 74515 1527 Locate
psbT gene + 74707 74808 102 Locate
psbN gene − 74882 75013 132 Locate
psbH gene + 75117 75338 222 Locate
petB gene + 75463 76831 1369 Locate
petD gene + 77020 78221 1202 Locate
rpoA gene − 78384 79397 1014 Locate
rps11 gene − 79469 79885 417 Locate
rpl36 gene − 79987 80100 114 Locate
infA gene − 80196 80429 234 Locate
rps8 gene − 80549 80959 411 Locate
rpl14 gene − 81128 81496 369 Locate
rpl16 gene − 81623 82867 1245 Locate
rps3 gene − 83022 83684 663 Locate
rpl22 gene − 83686 84141 456 Locate
rps19 gene − 84201 84479 279 Locate
rpl2 gene − 84534 86016 1483 Locate
rpl23 gene − 86035 86316 282 Locate
trnI-CAU gene − 86476 86549 74 Locate
ycf2 gene + 86638 93447 6810 Locate
ycf15 gene + 93589 93786 198 Locate
trnL-CAA gene − 94042 94122 81 Locate
ndhB gene − 94665 96876 2212 Locate
rps7 gene − 97151 97618 468 Locate
rps12 gene − 97672 98462 791 Locate
trnV-GAC gene + 100046 100117 72 Locate
rrn16 gene + 100345 101835 1491 Locate
trnI-GAU gene + 102134 103153 1020 Locate
trnA-UGC gene + 103219 104101 883 Locate
rrn23 gene + 104271 107083 2813 Locate
rrn4.5 gene + 107182 107284 103 Locate
rrn5 gene + 107532 107652 121 Locate
trnR-ACG gene + 107887 107960 74 Locate
trnN-GUU gene + 108508 108579 72 Locate
ndhF gene − 109656 111896 2241 Locate
rpl32 gene + 112413 112589 177 Locate
trnL-UAG gene + 113016 113095 80 Locate
ccsA gene + 113192 114166 975 Locate
ndhD gene − 114399 115919 1521 Locate
psaC gene − 116021 116266 246 Locate
ndhE gene − 116523 116828 306 Locate
ndhG gene − 117038 117568 531 Locate
ndhI gene − 117942 118433 492 Locate
ndhA gene − 118514 120606 2093 Locate
ndhH gene − 120608 121789 1182 Locate
rps15 gene − 121892 122164 273 Locate
ycf1 gene − 122432 127840 5409 Locate
trnN-GUU gene + 128170 128241 72 Locate
trnR-ACG gene − 128789 128862 74 Locate
rrn5 gene − 129097 129217 121 Locate
rrn4.5 gene − 129465 129567 103 Locate
rrn23 gene − 129666 132478 2813 Locate
trnA-UGC gene − 132648 133530 883 Locate
trnI-GAU gene − 133596 134615 1020 Locate
rrn16 gene − 134914 136404 1491 Locate
trnV-GAC gene − 136632 136703 72 Locate
rps12 gene + 138287 139077 791 Locate
rps7 gene + 139131 139598 468 Locate
ndhB gene + 139873 142084 2212 Locate
trnL-CAA gene + 142627 142707 81 Locate
ycf15 gene − 142963 143160 198 Locate
ycf2 gene − 143302 150111 6810 Locate
trnI-CAU gene + 150200 150273 74 Locate
rpl23 gene + 150433 150714 282 Locate
rpl2 gene + 150733 152215 1483 Locate
Status Available
Accession MW420972.1
Length 152,310 bp
GC content 38.3%
Annotated genes 132
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 4 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources