Scutellaria brachyspica chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ075906.1 · 8–81 bp · −
psbA · PQ075906.1 · 351–1,409 bp · −
trnK-UUU · PQ075906.1 · 1,651–4,239 bp · −
matK · PQ075906.1 · 1,946–3,481 bp · −
rps16 · PQ075906.1 · 5,121–6,283 bp · −
trnQ-UUG · PQ075906.1 · 7,295–7,366 bp · −
trnS-GCU · PQ075906.1 · 8,496–8,583 bp · −
atpA · PQ075906.1 · 10,364–11,887 bp · −
atpF · PQ075906.1 · 11,970–13,197 bp · −
atpH · PQ075906.1 · 13,553–13,798 bp · −
atpI · PQ075906.1 · 14,790–15,533 bp · −
rps2 · PQ075906.1 · 15,882–16,592 bp · −
rpoC2 · PQ075906.1 · 16,809–21,014 bp · −
rpoC1 · PQ075906.1 · 21,169–24,001 bp · −
rpoB · PQ075906.1 · 24,028–27,240 bp · −
psbM · PQ075906.1 · 30,280–30,384 bp · −
trnD-GUC · PQ075906.1 · 30,911–30,984 bp · −
trnY-GUA · PQ075906.1 · 31,098–31,181 bp · −
trnE-UUC · PQ075906.1 · 31,241–31,313 bp · −
trnS-UGA · PQ075906.1 · 35,934–36,025 bp · −
trnfM-CAU · PQ075906.1 · 37,024–37,097 bp · −
rps14 · PQ075906.1 · 37,247–37,549 bp · −
psaB · PQ075906.1 · 37,677–39,881 bp · −
psaA · PQ075906.1 · 39,907–42,159 bp · −
ycf3 · PQ075906.1 · 42,796–44,718 bp · −
rps4 · PQ075906.1 · 45,975–46,580 bp · −
trnT-UGU · PQ075906.1 · 46,923–46,995 bp · −
ndhJ · PQ075906.1 · 49,270–49,746 bp · −
ndhK · PQ075906.1 · 49,854–50,531 bp · −
ndhC · PQ075906.1 · 50,584–50,946 bp · −
trnV-UAC · PQ075906.1 · 51,794–52,446 bp · −
atpE · PQ075906.1 · 52,909–53,310 bp · −
atpB · PQ075906.1 · 53,307–54,794 bp · −
psbJ · PQ075906.1 · 64,420–64,542 bp · −
psbL · PQ075906.1 · 64,676–64,792 bp · −
psbF · PQ075906.1 · 64,816–64,935 bp · −
psbE · PQ075906.1 · 64,950–65,201 bp · −
trnW-CCA · PQ075906.1 · 66,613–66,686 bp · −
trnP-UGG · PQ075906.1 · 66,856–66,929 bp · −
rpl20 · PQ075906.1 · 68,728–69,114 bp · −
rps12 · PQ075906.1 · 69,903–70,028 bp · −
rps12 · PQ075906.1 · 97,242–98,032 bp · −
clpP · PQ075906.1 · 70,171–72,102 bp · −
psbN · PQ075906.1 · 74,462–74,593 bp · −
rpoA · PQ075906.1 · 77,963–78,976 bp · −
rps11 · PQ075906.1 · 79,048–79,464 bp · −
rpl36 · PQ075906.1 · 79,566–79,679 bp · −
infA · PQ075906.1 · 79,775–80,008 bp · −
rps8 · PQ075906.1 · 80,128–80,538 bp · −
rpl14 · PQ075906.1 · 80,709–81,077 bp · −
rpl16 · PQ075906.1 · 81,204–82,437 bp · −
rps3 · PQ075906.1 · 82,592–83,254 bp · −
rpl22 · PQ075906.1 · 83,256–83,711 bp · −
rps19 · PQ075906.1 · 83,771–84,049 bp · −
rpl2 · PQ075906.1 · 84,104–85,586 bp · −
rpl23 · PQ075906.1 · 85,605–85,886 bp · −
trnI-CAU · PQ075906.1 · 86,046–86,119 bp · −
trnL-CAA · PQ075906.1 · 93,612–93,692 bp · −
ndhB · PQ075906.1 · 94,235–96,446 bp · −
rps7 · PQ075906.1 · 96,721–97,188 bp · −
trnN-GUU · PQ075906.1 · 108,072–108,143 bp · −
ndhF · PQ075906.1 · 109,220–111,460 bp · −
ndhD · PQ075906.1 · 113,986–115,488 bp · −
psaC · PQ075906.1 · 115,608–115,853 bp · −
ndhE · PQ075906.1 · 116,110–116,415 bp · −
ndhG · PQ075906.1 · 116,646–117,176 bp · −
ndhI · PQ075906.1 · 117,541–118,041 bp · −
ndhA · PQ075906.1 · 118,122–120,213 bp · −
ndhH · PQ075906.1 · 120,215–121,396 bp · −
rps15 · PQ075906.1 · 121,499–121,831 bp · −
ycf1 · PQ075906.1 · 122,038–127,683 bp · −
trnR-ACG · PQ075906.1 · 128,520–128,593 bp · −
rrn5 · PQ075906.1 · 128,828–128,948 bp · −
rrn4.5 · PQ075906.1 · 129,196–129,298 bp · −
rrn23 · PQ075906.1 · 129,397–132,209 bp · −
trnA-UGC · PQ075906.1 · 132,379–133,262 bp · −
trnI-GAU · PQ075906.1 · 133,327–134,347 bp · −
ycf68 · PQ075906.1 · 133,953–134,192 bp · −
rrn16 · PQ075906.1 · 134,646–136,136 bp · −
trnV-GAC · PQ075906.1 · 136,364–136,435 bp · −
ycf15 · PQ075906.1 · 142,689–142,886 bp · −
ycf2 · PQ075906.1 · 143,028–149,837 bp · −
psbK · PQ075906.1 · 7,691–7,876 bp · +
psbI · PQ075906.1 · 8,268–8,378 bp · +
trnG-UCC · PQ075906.1 · 9,265–10,025 bp · +
trnR-UCU · PQ075906.1 · 10,196–10,267 bp · +
trnC-GCA · PQ075906.1 · 28,411–28,481 bp · +
petN · PQ075906.1 · 29,193–29,282 bp · +
trnT-GGU · PQ075906.1 · 31,889–31,960 bp · +
psbD · PQ075906.1 · 33,267–34,328 bp · +
psbC · PQ075906.1 · 34,276–35,697 bp · +
psbZ · PQ075906.1 · 36,345–36,533 bp · +
trnG-GCC · PQ075906.1 · 36,800–36,870 bp · +
trnS-GGA · PQ075906.1 · 45,603–45,689 bp · +
trnL-UAA · PQ075906.1 · 47,681–48,242 bp · +
trnF-GAA · PQ075906.1 · 48,549–48,621 bp · +
trnM-CAU · PQ075906.1 · 52,627–52,699 bp · +
rbcL · PQ075906.1 · 55,544–57,007 bp · +
accD · PQ075906.1 · 57,741–59,207 bp · +
psaI · PQ075906.1 · 59,781–59,891 bp · +
ycf4 · PQ075906.1 · 60,325–60,879 bp · +
cemA · PQ075906.1 · 61,617–62,216 bp · +
petA · PQ075906.1 · 62,423–63,385 bp · +
petL · PQ075906.1 · 66,110–66,205 bp · +
petG · PQ075906.1 · 66,381–66,494 bp · +
psaJ · PQ075906.1 · 67,202–67,336 bp · +
rpl33 · PQ075906.1 · 67,810–68,010 bp · +
rps18 · PQ075906.1 · 68,185–68,490 bp · +
rps12 · PQ075906.1 · 138,013–138,803 bp · +
psbB · PQ075906.1 · 72,569–74,095 bp · +
psbT · PQ075906.1 · 74,287–74,388 bp · +
psbH · PQ075906.1 · 74,697–74,918 bp · +
petB · PQ075906.1 · 75,043–76,410 bp · +
petD · PQ075906.1 · 76,599–77,800 bp · +
ycf2 · PQ075906.1 · 86,208–93,017 bp · +
ycf15 · PQ075906.1 · 93,159–93,356 bp · +
trnV-GAC · PQ075906.1 · 99,610–99,681 bp · +
rrn16 · PQ075906.1 · 99,909–101,399 bp · +
trnI-GAU · PQ075906.1 · 101,698–102,718 bp · +
trnA-UGC · PQ075906.1 · 102,783–103,666 bp · +
rrn23 · PQ075906.1 · 103,836–106,648 bp · +
rrn4.5 · PQ075906.1 · 106,747–106,849 bp · +
rrn5 · PQ075906.1 · 107,097–107,217 bp · +
trnR-ACG · PQ075906.1 · 107,452–107,525 bp · +
rpl32 · PQ075906.1 · 111,982–112,158 bp · +
trnL-UAG · PQ075906.1 · 112,603–112,682 bp · +
ccsA · PQ075906.1 · 112,779–113,753 bp · +
trnN-GUU · PQ075906.1 · 127,902–127,973 bp · +
rps7 · PQ075906.1 · 138,857–139,324 bp · +
ndhB · PQ075906.1 · 139,599–141,810 bp · +
trnL-CAA · PQ075906.1 · 142,353–142,433 bp · +
trnI-CAU · PQ075906.1 · 149,926–149,999 bp · +
rpl23 · PQ075906.1 · 150,159–150,440 bp · +
rpl2 · PQ075906.1 · 150,459–151,941 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria brachyspica
ANNOTATED PLASTOME
PQ075906.1
152,025 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 38006 76012 114019 152025 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU ycf68 rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 8 81 74 Locate
psbA gene − 351 1409 1059 Locate
trnK-UUU gene − 1651 4239 2589 Locate
matK gene − 1946 3481 1536 Locate
rps16 gene − 5121 6283 1163 Locate
trnQ-UUG gene − 7295 7366 72 Locate
psbK gene + 7691 7876 186 Locate
psbI gene + 8268 8378 111 Locate
trnS-GCU gene − 8496 8583 88 Locate
trnG-UCC gene + 9265 10025 761 Locate
trnR-UCU gene + 10196 10267 72 Locate
atpA gene − 10364 11887 1524 Locate
atpF gene − 11970 13197 1228 Locate
atpH gene − 13553 13798 246 Locate
atpI gene − 14790 15533 744 Locate
rps2 gene − 15882 16592 711 Locate
rpoC2 gene − 16809 21014 4206 Locate
rpoC1 gene − 21169 24001 2833 Locate
rpoB gene − 24028 27240 3213 Locate
trnC-GCA gene + 28411 28481 71 Locate
petN gene + 29193 29282 90 Locate
psbM gene − 30280 30384 105 Locate
trnD-GUC gene − 30911 30984 74 Locate
trnY-GUA gene − 31098 31181 84 Locate
trnE-UUC gene − 31241 31313 73 Locate
trnT-GGU gene + 31889 31960 72 Locate
psbD gene + 33267 34328 1062 Locate
psbC gene + 34276 35697 1422 Locate
trnS-UGA gene − 35934 36025 92 Locate
psbZ gene + 36345 36533 189 Locate
trnG-GCC gene + 36800 36870 71 Locate
trnfM-CAU gene − 37024 37097 74 Locate
rps14 gene − 37247 37549 303 Locate
psaB gene − 37677 39881 2205 Locate
psaA gene − 39907 42159 2253 Locate
ycf3 gene − 42796 44718 1923 Locate
trnS-GGA gene + 45603 45689 87 Locate
rps4 gene − 45975 46580 606 Locate
trnT-UGU gene − 46923 46995 73 Locate
trnL-UAA gene + 47681 48242 562 Locate
trnF-GAA gene + 48549 48621 73 Locate
ndhJ gene − 49270 49746 477 Locate
ndhK gene − 49854 50531 678 Locate
ndhC gene − 50584 50946 363 Locate
trnV-UAC gene − 51794 52446 653 Locate
trnM-CAU gene + 52627 52699 73 Locate
atpE gene − 52909 53310 402 Locate
atpB gene − 53307 54794 1488 Locate
rbcL gene + 55544 57007 1464 Locate
accD gene + 57741 59207 1467 Locate
psaI gene + 59781 59891 111 Locate
ycf4 gene + 60325 60879 555 Locate
cemA gene + 61617 62216 600 Locate
petA gene + 62423 63385 963 Locate
psbJ gene − 64420 64542 123 Locate
psbL gene − 64676 64792 117 Locate
psbF gene − 64816 64935 120 Locate
psbE gene − 64950 65201 252 Locate
petL gene + 66110 66205 96 Locate
petG gene + 66381 66494 114 Locate
trnW-CCA gene − 66613 66686 74 Locate
trnP-UGG gene − 66856 66929 74 Locate
psaJ gene + 67202 67336 135 Locate
rpl33 gene + 67810 68010 201 Locate
rps18 gene + 68185 68490 306 Locate
rpl20 gene − 68728 69114 387 Locate
rps12 gene − 69903 70028 126 Locate
clpP gene − 70171 72102 1932 Locate
psbB gene + 72569 74095 1527 Locate
psbT gene + 74287 74388 102 Locate
psbN gene − 74462 74593 132 Locate
psbH gene + 74697 74918 222 Locate
petB gene + 75043 76410 1368 Locate
petD gene + 76599 77800 1202 Locate
rpoA gene − 77963 78976 1014 Locate
rps11 gene − 79048 79464 417 Locate
rpl36 gene − 79566 79679 114 Locate
infA gene − 79775 80008 234 Locate
rps8 gene − 80128 80538 411 Locate
rpl14 gene − 80709 81077 369 Locate
rpl16 gene − 81204 82437 1234 Locate
rps3 gene − 82592 83254 663 Locate
rpl22 gene − 83256 83711 456 Locate
rps19 gene − 83771 84049 279 Locate
rpl2 gene − 84104 85586 1483 Locate
rpl23 gene − 85605 85886 282 Locate
trnI-CAU gene − 86046 86119 74 Locate
ycf2 gene + 86208 93017 6810 Locate
ycf15 gene + 93159 93356 198 Locate
trnL-CAA gene − 93612 93692 81 Locate
ndhB gene − 94235 96446 2212 Locate
rps7 gene − 96721 97188 468 Locate
rps12 gene − 97242 98032 791 Locate
trnV-GAC gene + 99610 99681 72 Locate
rrn16 gene + 99909 101399 1491 Locate
trnI-GAU gene + 101698 102718 1021 Locate
trnA-UGC gene + 102783 103666 884 Locate
rrn23 gene + 103836 106648 2813 Locate
rrn4.5 gene + 106747 106849 103 Locate
rrn5 gene + 107097 107217 121 Locate
trnR-ACG gene + 107452 107525 74 Locate
trnN-GUU gene − 108072 108143 72 Locate
ndhF gene − 109220 111460 2241 Locate
rpl32 gene + 111982 112158 177 Locate
trnL-UAG gene + 112603 112682 80 Locate
ccsA gene + 112779 113753 975 Locate
ndhD gene − 113986 115488 1503 Locate
psaC gene − 115608 115853 246 Locate
ndhE gene − 116110 116415 306 Locate
ndhG gene − 116646 117176 531 Locate
ndhI gene − 117541 118041 501 Locate
ndhA gene − 118122 120213 2092 Locate
ndhH gene − 120215 121396 1182 Locate
rps15 gene − 121499 121831 333 Locate
ycf1 gene − 122038 127683 5646 Locate
trnN-GUU gene + 127902 127973 72 Locate
trnR-ACG gene − 128520 128593 74 Locate
rrn5 gene − 128828 128948 121 Locate
rrn4.5 gene − 129196 129298 103 Locate
rrn23 gene − 129397 132209 2813 Locate
trnA-UGC gene − 132379 133262 884 Locate
trnI-GAU gene − 133327 134347 1021 Locate
ycf68 gene − 133953 134192 240 Locate
rrn16 gene − 134646 136136 1491 Locate
trnV-GAC gene − 136364 136435 72 Locate
rps12 gene + 138013 138803 791 Locate
rps7 gene + 138857 139324 468 Locate
ndhB gene + 139599 141810 2212 Locate
trnL-CAA gene + 142353 142433 81 Locate
ycf15 gene − 142689 142886 198 Locate
ycf2 gene − 143028 149837 6810 Locate
trnI-CAU gene + 149926 149999 74 Locate
rpl23 gene + 150159 150440 282 Locate
rpl2 gene + 150459 151941 1483 Locate
Status Available
Accession PQ075906.1
Length 152,025 bp
GC content 38.4%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources