Scutellaria brevibracteata subsp. subvelutina chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ059224.1 · 2–75 bp · −
psbA · PQ059224.1 · 362–1,420 bp · −
trnK-UUU · PQ059224.1 · 1,657–4,250 bp · −
matK · PQ059224.1 · 1,946–3,490 bp · −
rps16 · PQ059224.1 · 5,156–6,328 bp · −
trnQ-UUG · PQ059224.1 · 7,465–7,536 bp · −
trnS-GCU · PQ059224.1 · 8,653–8,740 bp · −
atpA · PQ059224.1 · 10,523–12,046 bp · −
atpF · PQ059224.1 · 12,130–13,358 bp · −
atpH · PQ059224.1 · 13,724–13,969 bp · −
atpI · PQ059224.1 · 14,963–15,706 bp · −
rps2 · PQ059224.1 · 16,054–16,764 bp · −
rpoC2 · PQ059224.1 · 16,982–21,172 bp · −
rpoC1 · PQ059224.1 · 21,327–24,145 bp · −
rpoB · PQ059224.1 · 24,172–27,384 bp · −
psbM · PQ059224.1 · 30,459–30,563 bp · −
trnD-GUC · PQ059224.1 · 31,095–31,168 bp · −
trnY-GUA · PQ059224.1 · 31,282–31,365 bp · −
trnE-UUC · PQ059224.1 · 31,425–31,497 bp · −
trnS-UGA · PQ059224.1 · 36,122–36,213 bp · −
trnfM-CAU · PQ059224.1 · 37,215–37,288 bp · −
rps14 · PQ059224.1 · 37,438–37,740 bp · −
psaB · PQ059224.1 · 37,873–40,077 bp · −
psaA · PQ059224.1 · 40,103–42,355 bp · −
ycf3 · PQ059224.1 · 43,057–44,978 bp · −
rps4 · PQ059224.1 · 46,222–46,827 bp · −
trnT-UGU · PQ059224.1 · 47,167–47,239 bp · −
ndhJ · PQ059224.1 · 49,501–49,977 bp · −
ndhK · PQ059224.1 · 50,082–50,759 bp · −
ndhC · PQ059224.1 · 50,812–51,174 bp · −
trnV-UAC · PQ059224.1 · 52,163–52,821 bp · −
atpE · PQ059224.1 · 53,283–53,684 bp · −
atpB · PQ059224.1 · 53,681–55,177 bp · −
psbJ · PQ059224.1 · 64,344–64,466 bp · −
psbL · PQ059224.1 · 64,600–64,716 bp · −
psbF · PQ059224.1 · 64,740–64,859 bp · −
psbE · PQ059224.1 · 64,874–65,125 bp · −
trnW-CCA · PQ059224.1 · 66,541–66,614 bp · −
trnP-UGG · PQ059224.1 · 66,784–66,857 bp · −
rpl20 · PQ059224.1 · 68,659–69,045 bp · −
rps12 · PQ059224.1 · 69,842–69,955 bp · −
rps12 · PQ059224.1 · 97,147–97,937 bp · −
clpP · PQ059224.1 · 70,097–72,034 bp · −
psbN · PQ059224.1 · 74,360–74,491 bp · −
rpoA · PQ059224.1 · 77,872–78,885 bp · −
rps11 · PQ059224.1 · 78,957–79,373 bp · −
rpl36 · PQ059224.1 · 79,475–79,588 bp · −
infA · PQ059224.1 · 79,684–79,917 bp · −
rps8 · PQ059224.1 · 80,040–80,450 bp · −
rpl14 · PQ059224.1 · 80,611–80,979 bp · −
rpl16 · PQ059224.1 · 81,106–82,336 bp · −
rps3 · PQ059224.1 · 82,491–83,153 bp · −
rpl22 · PQ059224.1 · 83,155–83,610 bp · −
rps19 · PQ059224.1 · 83,670–83,948 bp · −
rpl2 · PQ059224.1 · 84,004–85,486 bp · −
rpl23 · PQ059224.1 · 85,505–85,786 bp · −
trnI-CAU · PQ059224.1 · 85,946–86,019 bp · −
trnL-CAA · PQ059224.1 · 93,517–93,597 bp · −
ndhB · PQ059224.1 · 94,140–96,351 bp · −
rps7 · PQ059224.1 · 96,626–97,093 bp · −
trnN-GUU · PQ059224.1 · 107,977–108,048 bp · −
ndhF · PQ059224.1 · 109,125–111,365 bp · −
ndhD · PQ059224.1 · 113,865–115,394 bp · −
psaC · PQ059224.1 · 115,501–115,746 bp · −
ndhE · PQ059224.1 · 116,002–116,307 bp · −
ndhG · PQ059224.1 · 116,531–117,061 bp · −
ndhI · PQ059224.1 · 117,411–117,911 bp · −
ndhA · PQ059224.1 · 117,992–120,095 bp · −
ndhH · PQ059224.1 · 120,097–121,278 bp · −
rps15 · PQ059224.1 · 121,375–121,707 bp · −
ycf1 · PQ059224.1 · 121,916–127,591 bp · −
trnR-ACG · PQ059224.1 · 128,437–128,510 bp · −
rrn5 · PQ059224.1 · 128,745–128,865 bp · −
rrn4.5 · PQ059224.1 · 129,113–129,215 bp · −
rrn23 · PQ059224.1 · 129,314–132,125 bp · −
trnA-UGC · PQ059224.1 · 132,295–133,182 bp · −
trnI-GAU · PQ059224.1 · 133,247–134,265 bp · −
ycf68 · PQ059224.1 · 133,817–134,110 bp · −
rrn16 · PQ059224.1 · 134,564–136,054 bp · −
trnV-GAC · PQ059224.1 · 136,277–136,348 bp · −
ycf15 · PQ059224.1 · 142,602–142,799 bp · −
ycf2 · PQ059224.1 · 142,941–149,750 bp · −
psbK · PQ059224.1 · 7,861–8,046 bp · +
psbI · PQ059224.1 · 8,444–8,554 bp · +
trnG-UCC · PQ059224.1 · 9,435–10,189 bp · +
trnR-UCU · PQ059224.1 · 10,355–10,426 bp · +
trnC-GCA · PQ059224.1 · 28,557–28,627 bp · +
petN · PQ059224.1 · 29,363–29,452 bp · +
trnT-GGU · PQ059224.1 · 32,069–32,140 bp · +
psbD · PQ059224.1 · 33,457–34,518 bp · +
psbC · PQ059224.1 · 34,466–35,887 bp · +
psbZ · PQ059224.1 · 36,533–36,721 bp · +
trnG-GCC · PQ059224.1 · 36,994–37,064 bp · +
trnS-GGA · PQ059224.1 · 45,852–45,938 bp · +
trnL-UAA · PQ059224.1 · 47,907–48,473 bp · +
trnF-GAA · PQ059224.1 · 48,779–48,851 bp · +
trnM-CAU · PQ059224.1 · 53,002–53,074 bp · +
rbcL · PQ059224.1 · 55,925–57,388 bp · +
accD · PQ059224.1 · 58,114–59,604 bp · +
psaI · PQ059224.1 · 59,842–59,952 bp · +
ycf4 · PQ059224.1 · 60,386–60,940 bp · +
cemA · PQ059224.1 · 61,554–62,153 bp · +
petA · PQ059224.1 · 62,360–63,322 bp · +
petL · PQ059224.1 · 66,048–66,143 bp · +
petG · PQ059224.1 · 66,319–66,432 bp · +
psaJ · PQ059224.1 · 67,130–67,264 bp · +
rpl33 · PQ059224.1 · 67,738–67,938 bp · +
rps18 · PQ059224.1 · 68,113–68,418 bp · +
rps12 · PQ059224.1 · 137,921–138,711 bp · +
psbB · PQ059224.1 · 72,488–74,014 bp · +
psbT · PQ059224.1 · 74,192–74,299 bp · +
psbH · PQ059224.1 · 74,595–74,816 bp · +
petB · PQ059224.1 · 74,941–76,309 bp · +
petD · PQ059224.1 · 76,498–77,709 bp · +
ycf2 · PQ059224.1 · 86,108–92,917 bp · +
ycf15 · PQ059224.1 · 93,059–93,256 bp · +
trnV-GAC · PQ059224.1 · 99,510–99,581 bp · +
rrn16 · PQ059224.1 · 99,804–101,294 bp · +
trnI-GAU · PQ059224.1 · 101,593–102,611 bp · +
trnA-UGC · PQ059224.1 · 102,676–103,563 bp · +
rrn23 · PQ059224.1 · 103,733–106,544 bp · +
rrn4.5 · PQ059224.1 · 106,643–106,745 bp · +
rrn5 · PQ059224.1 · 106,993–107,113 bp · +
trnR-ACG · PQ059224.1 · 107,348–107,421 bp · +
rpl32 · PQ059224.1 · 111,881–112,057 bp · +
trnL-UAG · PQ059224.1 · 112,492–112,571 bp · +
ccsA · PQ059224.1 · 112,653–113,627 bp · +
trnN-GUU · PQ059224.1 · 127,810–127,881 bp · +
rps7 · PQ059224.1 · 138,765–139,232 bp · +
ndhB · PQ059224.1 · 139,507–141,718 bp · +
trnL-CAA · PQ059224.1 · 142,261–142,341 bp · +
trnI-CAU · PQ059224.1 · 149,839–149,912 bp · +
rpl23 · PQ059224.1 · 150,072–150,353 bp · +
rpl2 · PQ059224.1 · 150,372–151,854 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria brevibracteata subsp. subvelutina
ANNOTATED PLASTOME
PQ059224.1
151,952 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37988 75976 113964 151952 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU ycf68 rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 2 75 74 Locate
psbA gene − 362 1420 1059 Locate
trnK-UUU gene − 1657 4250 2594 Locate
matK gene − 1946 3490 1545 Locate
rps16 gene − 5156 6328 1173 Locate
trnQ-UUG gene − 7465 7536 72 Locate
psbK gene + 7861 8046 186 Locate
psbI gene + 8444 8554 111 Locate
trnS-GCU gene − 8653 8740 88 Locate
trnG-UCC gene + 9435 10189 755 Locate
trnR-UCU gene + 10355 10426 72 Locate
atpA gene − 10523 12046 1524 Locate
atpF gene − 12130 13358 1229 Locate
atpH gene − 13724 13969 246 Locate
atpI gene − 14963 15706 744 Locate
rps2 gene − 16054 16764 711 Locate
rpoC2 gene − 16982 21172 4191 Locate
rpoC1 gene − 21327 24145 2819 Locate
rpoB gene − 24172 27384 3213 Locate
trnC-GCA gene + 28557 28627 71 Locate
petN gene + 29363 29452 90 Locate
psbM gene − 30459 30563 105 Locate
trnD-GUC gene − 31095 31168 74 Locate
trnY-GUA gene − 31282 31365 84 Locate
trnE-UUC gene − 31425 31497 73 Locate
trnT-GGU gene + 32069 32140 72 Locate
psbD gene + 33457 34518 1062 Locate
psbC gene + 34466 35887 1422 Locate
trnS-UGA gene − 36122 36213 92 Locate
psbZ gene + 36533 36721 189 Locate
trnG-GCC gene + 36994 37064 71 Locate
trnfM-CAU gene − 37215 37288 74 Locate
rps14 gene − 37438 37740 303 Locate
psaB gene − 37873 40077 2205 Locate
psaA gene − 40103 42355 2253 Locate
ycf3 gene − 43057 44978 1922 Locate
trnS-GGA gene + 45852 45938 87 Locate
rps4 gene − 46222 46827 606 Locate
trnT-UGU gene − 47167 47239 73 Locate
trnL-UAA gene + 47907 48473 567 Locate
trnF-GAA gene + 48779 48851 73 Locate
ndhJ gene − 49501 49977 477 Locate
ndhK gene − 50082 50759 678 Locate
ndhC gene − 50812 51174 363 Locate
trnV-UAC gene − 52163 52821 659 Locate
trnM-CAU gene + 53002 53074 73 Locate
atpE gene − 53283 53684 402 Locate
atpB gene − 53681 55177 1497 Locate
rbcL gene + 55925 57388 1464 Locate
accD gene + 58114 59604 1491 Locate
psaI gene + 59842 59952 111 Locate
ycf4 gene + 60386 60940 555 Locate
cemA gene + 61554 62153 600 Locate
petA gene + 62360 63322 963 Locate
psbJ gene − 64344 64466 123 Locate
psbL gene − 64600 64716 117 Locate
psbF gene − 64740 64859 120 Locate
psbE gene − 64874 65125 252 Locate
petL gene + 66048 66143 96 Locate
petG gene + 66319 66432 114 Locate
trnW-CCA gene − 66541 66614 74 Locate
trnP-UGG gene − 66784 66857 74 Locate
psaJ gene + 67130 67264 135 Locate
rpl33 gene + 67738 67938 201 Locate
rps18 gene + 68113 68418 306 Locate
rpl20 gene − 68659 69045 387 Locate
rps12 gene − 69842 69955 114 Locate
clpP gene − 70097 72034 1938 Locate
psbB gene + 72488 74014 1527 Locate
psbT gene + 74192 74299 108 Locate
psbN gene − 74360 74491 132 Locate
psbH gene + 74595 74816 222 Locate
petB gene + 74941 76309 1369 Locate
petD gene + 76498 77709 1212 Locate
rpoA gene − 77872 78885 1014 Locate
rps11 gene − 78957 79373 417 Locate
rpl36 gene − 79475 79588 114 Locate
infA gene − 79684 79917 234 Locate
rps8 gene − 80040 80450 411 Locate
rpl14 gene − 80611 80979 369 Locate
rpl16 gene − 81106 82336 1231 Locate
rps3 gene − 82491 83153 663 Locate
rpl22 gene − 83155 83610 456 Locate
rps19 gene − 83670 83948 279 Locate
rpl2 gene − 84004 85486 1483 Locate
rpl23 gene − 85505 85786 282 Locate
trnI-CAU gene − 85946 86019 74 Locate
ycf2 gene + 86108 92917 6810 Locate
ycf15 gene + 93059 93256 198 Locate
trnL-CAA gene − 93517 93597 81 Locate
ndhB gene − 94140 96351 2212 Locate
rps7 gene − 96626 97093 468 Locate
rps12 gene − 97147 97937 791 Locate
trnV-GAC gene + 99510 99581 72 Locate
rrn16 gene + 99804 101294 1491 Locate
trnI-GAU gene + 101593 102611 1019 Locate
trnA-UGC gene + 102676 103563 888 Locate
rrn23 gene + 103733 106544 2812 Locate
rrn4.5 gene + 106643 106745 103 Locate
rrn5 gene + 106993 107113 121 Locate
trnR-ACG gene + 107348 107421 74 Locate
trnN-GUU gene − 107977 108048 72 Locate
ndhF gene − 109125 111365 2241 Locate
rpl32 gene + 111881 112057 177 Locate
trnL-UAG gene + 112492 112571 80 Locate
ccsA gene + 112653 113627 975 Locate
ndhD gene − 113865 115394 1530 Locate
psaC gene − 115501 115746 246 Locate
ndhE gene − 116002 116307 306 Locate
ndhG gene − 116531 117061 531 Locate
ndhI gene − 117411 117911 501 Locate
ndhA gene − 117992 120095 2104 Locate
ndhH gene − 120097 121278 1182 Locate
rps15 gene − 121375 121707 333 Locate
ycf1 gene − 121916 127591 5676 Locate
trnN-GUU gene + 127810 127881 72 Locate
trnR-ACG gene − 128437 128510 74 Locate
rrn5 gene − 128745 128865 121 Locate
rrn4.5 gene − 129113 129215 103 Locate
rrn23 gene − 129314 132125 2812 Locate
trnA-UGC gene − 132295 133182 888 Locate
trnI-GAU gene − 133247 134265 1019 Locate
ycf68 gene − 133817 134110 294 Locate
rrn16 gene − 134564 136054 1491 Locate
trnV-GAC gene − 136277 136348 72 Locate
rps12 gene + 137921 138711 791 Locate
rps7 gene + 138765 139232 468 Locate
ndhB gene + 139507 141718 2212 Locate
trnL-CAA gene + 142261 142341 81 Locate
ycf15 gene − 142602 142799 198 Locate
ycf2 gene − 142941 149750 6810 Locate
trnI-CAU gene + 149839 149912 74 Locate
rpl23 gene + 150072 150353 282 Locate
rpl2 gene + 150372 151854 1483 Locate
Status Available
Accession PQ059224.1
Length 151,952 bp
GC content 38.3%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources