Scutellaria brevibracteata chloroplast
Biopython GenomeDiagram 1.79; GenBank local location segments.
IR
IR
trnH-GUG · PQ059216.1 · 6–79 bp · −
psbA · PQ059216.1 · 397–1,455 bp · −
trnK-UUU · PQ059216.1 · 1,697–4,289 bp · −
matK · PQ059216.1 · 1,986–3,530 bp · −
rps16 · PQ059216.1 · 5,205–6,377 bp · −
trnQ-UUG · PQ059216.1 · 7,490–7,561 bp · −
trnS-GCU · PQ059216.1 · 8,678–8,765 bp · −
atpA · PQ059216.1 · 10,548–12,071 bp · −
atpF · PQ059216.1 · 12,156–13,385 bp · −
atpH · PQ059216.1 · 13,756–14,001 bp · −
atpI · PQ059216.1 · 14,995–15,738 bp · −
rps2 · PQ059216.1 · 16,086–16,796 bp · −
rpoC2 · PQ059216.1 · 17,014–21,213 bp · −
rpoC1 · PQ059216.1 · 21,368–24,186 bp · −
rpoB · PQ059216.1 · 24,213–27,425 bp · −
psbM · PQ059216.1 · 30,512–30,616 bp · −
trnD-GUC · PQ059216.1 · 31,148–31,221 bp · −
trnY-GUA · PQ059216.1 · 31,335–31,418 bp · −
trnE-UUC · PQ059216.1 · 31,478–31,550 bp · −
trnS-UGA · PQ059216.1 · 36,175–36,266 bp · −
trnfM-CAU · PQ059216.1 · 37,262–37,335 bp · −
rps14 · PQ059216.1 · 37,485–37,787 bp · −
psaB · PQ059216.1 · 37,917–40,121 bp · −
psaA · PQ059216.1 · 40,147–42,399 bp · −
ycf3 · PQ059216.1 · 43,097–45,019 bp · −
rps4 · PQ059216.1 · 46,263–46,868 bp · −
trnT-UGU · PQ059216.1 · 47,208–47,280 bp · −
ndhJ · PQ059216.1 · 49,537–50,013 bp · −
ndhK · PQ059216.1 · 50,118–50,795 bp · −
ndhC · PQ059216.1 · 50,848–51,210 bp · −
trnV-UAC · PQ059216.1 · 52,199–52,857 bp · −
atpE · PQ059216.1 · 53,319–53,720 bp · −
atpB · PQ059216.1 · 53,717–55,213 bp · −
psbJ · PQ059216.1 · 64,381–64,503 bp · −
psbL · PQ059216.1 · 64,637–64,858 bp · −
psbF · PQ059216.1 · 64,777–64,896 bp · −
psbE · PQ059216.1 · 64,911–65,162 bp · −
trnW-CCA · PQ059216.1 · 66,577–66,650 bp · −
trnP-UGG · PQ059216.1 · 66,820–66,893 bp · −
rpl20 · PQ059216.1 · 68,690–69,076 bp · −
rps12 · PQ059216.1 · 69,860–69,985 bp · −
rps12 · PQ059216.1 · 97,185–97,975 bp · −
clpP · PQ059216.1 · 70,127–72,063 bp · −
psbN · PQ059216.1 · 74,391–74,522 bp · −
rpoA · PQ059216.1 · 77,909–78,922 bp · −
rps11 · PQ059216.1 · 78,994–79,410 bp · −
rpl36 · PQ059216.1 · 79,512–79,625 bp · −
infA · PQ059216.1 · 79,721–79,954 bp · −
rps8 · PQ059216.1 · 80,077–80,487 bp · −
rpl14 · PQ059216.1 · 80,649–81,017 bp · −
rpl16 · PQ059216.1 · 81,144–82,374 bp · −
rps3 · PQ059216.1 · 82,529–83,191 bp · −
rpl22 · PQ059216.1 · 83,193–83,648 bp · −
rps19 · PQ059216.1 · 83,708–83,986 bp · −
rpl2 · PQ059216.1 · 84,042–85,524 bp · −
rpl23 · PQ059216.1 · 85,543–85,824 bp · −
trnI-CAU · PQ059216.1 · 85,984–86,057 bp · −
trnL-CAA · PQ059216.1 · 93,555–93,635 bp · −
ndhB · PQ059216.1 · 94,178–96,335 bp · −
rps7 · PQ059216.1 · 96,664–97,131 bp · −
trnN-GUU · PQ059216.1 · 108,015–108,086 bp · −
ndhF · PQ059216.1 · 109,163–111,403 bp · −
ndhD · PQ059216.1 · 113,903–115,432 bp · −
psaC · PQ059216.1 · 115,540–115,785 bp · −
ndhE · PQ059216.1 · 116,041–116,346 bp · −
ndhG · PQ059216.1 · 116,570–117,100 bp · −
ndhI · PQ059216.1 · 117,449–117,949 bp · −
ndhA · PQ059216.1 · 118,030–120,139 bp · −
ndhH · PQ059216.1 · 120,141–121,352 bp · −
rps15 · PQ059216.1 · 121,419–121,691 bp · −
ycf1 · PQ059216.1 · 121,960–127,635 bp · −
trnR-ACG · PQ059216.1 · 128,481–128,554 bp · −
rrn5 · PQ059216.1 · 128,789–128,909 bp · −
rrn4.5 · PQ059216.1 · 129,157–129,259 bp · −
rrn23 · PQ059216.1 · 129,358–132,169 bp · −
trnA-UGC · PQ059216.1 · 132,339–133,226 bp · −
trnI-GAU · PQ059216.1 · 133,291–134,309 bp · −
ycf68 · PQ059216.1 · 133,861–134,154 bp · −
rrn16 · PQ059216.1 · 134,608–136,098 bp · −
trnV-GAC · PQ059216.1 · 136,321–136,392 bp · −
ycf15 · PQ059216.1 · 142,646–142,894 bp · −
ycf2 · PQ059216.1 · 142,985–149,794 bp · −
psbK · PQ059216.1 · 7,886–8,071 bp · +
psbI · PQ059216.1 · 8,469–8,579 bp · +
trnG-UCC · PQ059216.1 · 9,460–10,214 bp · +
trnR-UCU · PQ059216.1 · 10,380–10,451 bp · +
trnC-GCA · PQ059216.1 · 28,608–28,678 bp · +
petN · PQ059216.1 · 29,414–29,503 bp · +
trnT-GGU · PQ059216.1 · 32,122–32,193 bp · +
psbD · PQ059216.1 · 33,510–34,571 bp · +
psbC · PQ059216.1 · 34,519–35,940 bp · +
psbZ · PQ059216.1 · 36,586–36,774 bp · +
trnG-GCC · PQ059216.1 · 37,047–37,117 bp · +
trnS-GGA · PQ059216.1 · 45,893–45,979 bp · +
trnL-UAA · PQ059216.1 · 47,943–48,509 bp · +
trnF-GAA · PQ059216.1 · 48,815–48,887 bp · +
trnM-CAU · PQ059216.1 · 53,038–53,110 bp · +
rbcL · PQ059216.1 · 55,961–57,424 bp · +
accD · PQ059216.1 · 58,150–59,640 bp · +
psaI · PQ059216.1 · 59,878–59,988 bp · +
ycf4 · PQ059216.1 · 60,422–60,976 bp · +
cemA · PQ059216.1 · 61,590–62,189 bp · +
petA · PQ059216.1 · 62,396–63,358 bp · +
petL · PQ059216.1 · 66,084–66,179 bp · +
petG · PQ059216.1 · 66,355–66,468 bp · +
psaJ · PQ059216.1 · 67,166–67,300 bp · +
rpl33 · PQ059216.1 · 67,769–67,969 bp · +
rps18 · PQ059216.1 · 68,144–68,449 bp · +
rps12 · PQ059216.1 · 137,965–138,755 bp · +
psbB · PQ059216.1 · 72,517–74,043 bp · +
psbT · PQ059216.1 · 74,223–74,330 bp · +
psbH · PQ059216.1 · 74,626–74,847 bp · +
petB · PQ059216.1 · 74,972–76,340 bp · +
petD · PQ059216.1 · 76,529–77,746 bp · +
ycf2 · PQ059216.1 · 86,146–92,955 bp · +
ycf15 · PQ059216.1 · 93,046–93,294 bp · +
trnV-GAC · PQ059216.1 · 99,548–99,619 bp · +
rrn16 · PQ059216.1 · 99,842–101,332 bp · +
trnI-GAU · PQ059216.1 · 101,631–102,649 bp · +
trnA-UGC · PQ059216.1 · 102,714–103,601 bp · +
rrn23 · PQ059216.1 · 103,771–106,582 bp · +
rrn4.5 · PQ059216.1 · 106,681–106,783 bp · +
rrn5 · PQ059216.1 · 107,031–107,151 bp · +
trnR-ACG · PQ059216.1 · 107,386–107,459 bp · +
rpl32 · PQ059216.1 · 111,918–112,094 bp · +
trnL-UAG · PQ059216.1 · 112,529–112,608 bp · +
ccsA · PQ059216.1 · 112,691–113,665 bp · +
trnN-GUU · PQ059216.1 · 127,854–127,925 bp · +
rps7 · PQ059216.1 · 138,809–139,276 bp · +
ndhB · PQ059216.1 · 139,605–141,762 bp · +
trnL-CAA · PQ059216.1 · 142,305–142,385 bp · +
trnI-CAU · PQ059216.1 · 149,883–149,956 bp · +
rpl23 · PQ059216.1 · 150,116–150,397 bp · +
rpl2 · PQ059216.1 · 150,416–151,898 bp · +
0 kb
13 kb
26 kb
39 kb
52 kb
65 kb
78 kb
91 kb
104 kb
117 kb
130 kb
143 kb
Scutellaria brevibracteata
ANNOTATED PLASTOME
PQ059216.1
151,992 bp · 133 genes
Gene function
Transfer RNA
Photosystem II
Other
Ribosomal protein
ATP synthase
RNA polymerase
Cytochrome
Photosystem I
NADH dehydrogenase
Ribosomal RNA
0 37998 75996 113994 151992 bp
Forward strand 5′ → 3′
psbK psbI trnG-UCC trnR-UCU trnC-GCA petN trnT-GGU psbD psbC psbZ trnG-GCC trnS-GGA trnL-UAA trnF-GAA trnM-CAU rbcL accD psaI ycf4 cemA petA petL petG psaJ rpl33 rps18 psbB psbT psbH petB petD ycf2 ycf15 trnV-GAC rrn16 trnI-GAU trnA-UGC rrn23 rrn4.5 rrn5 trnR-ACG rpl32 trnL-UAG ccsA trnN-GUU rps12 rps7 ndhB trnL-CAA trnI-CAU rpl23 rpl2
trnH-GUG psbA trnK-UUU matK rps16 trnQ-UUG trnS-GCU atpA atpF atpH atpI rps2 rpoC2 rpoC1 rpoB psbM trnD-GUC trnY-GUA trnE-UUC trnS-UGA trnfM-CAU rps14 psaB psaA ycf3 rps4 trnT-UGU ndhJ ndhK ndhC trnV-UAC atpE atpB psbJ psbL psbF psbE trnW-CCA trnP-UGG rpl20 rps12 clpP psbN rpoA rps11 rpl36 infA rps8 rpl14 rpl16 rps3 rpl22 rps19 rpl2 rpl23 trnI-CAU trnL-CAA ndhB rps7 rps12 trnN-GUU ndhF ndhD psaC ndhE ndhG ndhI ndhA ndhH rps15 ycf1 trnR-ACG rrn5 rrn4.5 rrn23 trnA-UGC trnI-GAU ycf68 rrn16 trnV-GAC ycf15 ycf2
Reverse strand 3′ ← 5′
Outer ring: forward strand; inner ring: reverse strand. The innermost ring shows overall GC percentage. GenBank gene locations may include introns; discontinuous parts are drawn separately. Hover for coordinates; click a segment to open its gene page. Biopython GenomeDiagram .
Gene-position browser Map and table selections are linked. Each row is one local segment; coordinates are 1-based and inclusive.
134 local segments
Gene Type Group Strand Start End Length
trnH-GUG gene − 6 79 74 Locate
psbA gene − 397 1455 1059 Locate
trnK-UUU gene − 1697 4289 2593 Locate
matK gene − 1986 3530 1545 Locate
rps16 gene − 5205 6377 1173 Locate
trnQ-UUG gene − 7490 7561 72 Locate
psbK gene + 7886 8071 186 Locate
psbI gene + 8469 8579 111 Locate
trnS-GCU gene − 8678 8765 88 Locate
trnG-UCC gene + 9460 10214 755 Locate
trnR-UCU gene + 10380 10451 72 Locate
atpA gene − 10548 12071 1524 Locate
atpF gene − 12156 13385 1230 Locate
atpH gene − 13756 14001 246 Locate
atpI gene − 14995 15738 744 Locate
rps2 gene − 16086 16796 711 Locate
rpoC2 gene − 17014 21213 4200 Locate
rpoC1 gene − 21368 24186 2819 Locate
rpoB gene − 24213 27425 3213 Locate
trnC-GCA gene + 28608 28678 71 Locate
petN gene + 29414 29503 90 Locate
psbM gene − 30512 30616 105 Locate
trnD-GUC gene − 31148 31221 74 Locate
trnY-GUA gene − 31335 31418 84 Locate
trnE-UUC gene − 31478 31550 73 Locate
trnT-GGU gene + 32122 32193 72 Locate
psbD gene + 33510 34571 1062 Locate
psbC gene + 34519 35940 1422 Locate
trnS-UGA gene − 36175 36266 92 Locate
psbZ gene + 36586 36774 189 Locate
trnG-GCC gene + 37047 37117 71 Locate
trnfM-CAU gene − 37262 37335 74 Locate
rps14 gene − 37485 37787 303 Locate
psaB gene − 37917 40121 2205 Locate
psaA gene − 40147 42399 2253 Locate
ycf3 gene − 43097 45019 1923 Locate
trnS-GGA gene + 45893 45979 87 Locate
rps4 gene − 46263 46868 606 Locate
trnT-UGU gene − 47208 47280 73 Locate
trnL-UAA gene + 47943 48509 567 Locate
trnF-GAA gene + 48815 48887 73 Locate
ndhJ gene − 49537 50013 477 Locate
ndhK gene − 50118 50795 678 Locate
ndhC gene − 50848 51210 363 Locate
trnV-UAC gene − 52199 52857 659 Locate
trnM-CAU gene + 53038 53110 73 Locate
atpE gene − 53319 53720 402 Locate
atpB gene − 53717 55213 1497 Locate
rbcL gene + 55961 57424 1464 Locate
accD gene + 58150 59640 1491 Locate
psaI gene + 59878 59988 111 Locate
ycf4 gene + 60422 60976 555 Locate
cemA gene + 61590 62189 600 Locate
petA gene + 62396 63358 963 Locate
psbJ gene − 64381 64503 123 Locate
psbL gene − 64637 64858 222 Locate
psbF gene − 64777 64896 120 Locate
psbE gene − 64911 65162 252 Locate
petL gene + 66084 66179 96 Locate
petG gene + 66355 66468 114 Locate
trnW-CCA gene − 66577 66650 74 Locate
trnP-UGG gene − 66820 66893 74 Locate
psaJ gene + 67166 67300 135 Locate
rpl33 gene + 67769 67969 201 Locate
rps18 gene + 68144 68449 306 Locate
rpl20 gene − 68690 69076 387 Locate
rps12 gene − 69860 69985 126 Locate
clpP gene − 70127 72063 1937 Locate
psbB gene + 72517 74043 1527 Locate
psbT gene + 74223 74330 108 Locate
psbN gene − 74391 74522 132 Locate
psbH gene + 74626 74847 222 Locate
petB gene + 74972 76340 1369 Locate
petD gene + 76529 77746 1218 Locate
rpoA gene − 77909 78922 1014 Locate
rps11 gene − 78994 79410 417 Locate
rpl36 gene − 79512 79625 114 Locate
infA gene − 79721 79954 234 Locate
rps8 gene − 80077 80487 411 Locate
rpl14 gene − 80649 81017 369 Locate
rpl16 gene − 81144 82374 1231 Locate
rps3 gene − 82529 83191 663 Locate
rpl22 gene − 83193 83648 456 Locate
rps19 gene − 83708 83986 279 Locate
rpl2 gene − 84042 85524 1483 Locate
rpl23 gene − 85543 85824 282 Locate
trnI-CAU gene − 85984 86057 74 Locate
ycf2 gene + 86146 92955 6810 Locate
ycf15 gene + 93046 93294 249 Locate
trnL-CAA gene − 93555 93635 81 Locate
ndhB gene − 94178 96335 2158 Locate
rps7 gene − 96664 97131 468 Locate
rps12 gene − 97185 97975 791 Locate
trnV-GAC gene + 99548 99619 72 Locate
rrn16 gene + 99842 101332 1491 Locate
trnI-GAU gene + 101631 102649 1019 Locate
trnA-UGC gene + 102714 103601 888 Locate
rrn23 gene + 103771 106582 2812 Locate
rrn4.5 gene + 106681 106783 103 Locate
rrn5 gene + 107031 107151 121 Locate
trnR-ACG gene + 107386 107459 74 Locate
trnN-GUU gene − 108015 108086 72 Locate
ndhF gene − 109163 111403 2241 Locate
rpl32 gene + 111918 112094 177 Locate
trnL-UAG gene + 112529 112608 80 Locate
ccsA gene + 112691 113665 975 Locate
ndhD gene − 113903 115432 1530 Locate
psaC gene − 115540 115785 246 Locate
ndhE gene − 116041 116346 306 Locate
ndhG gene − 116570 117100 531 Locate
ndhI gene − 117449 117949 501 Locate
ndhA gene − 118030 120139 2110 Locate
ndhH gene − 120141 121352 1212 Locate
rps15 gene − 121419 121691 273 Locate
ycf1 gene − 121960 127635 5676 Locate
trnN-GUU gene + 127854 127925 72 Locate
trnR-ACG gene − 128481 128554 74 Locate
rrn5 gene − 128789 128909 121 Locate
rrn4.5 gene − 129157 129259 103 Locate
rrn23 gene − 129358 132169 2812 Locate
trnA-UGC gene − 132339 133226 888 Locate
trnI-GAU gene − 133291 134309 1019 Locate
ycf68 gene − 133861 134154 294 Locate
rrn16 gene − 134608 136098 1491 Locate
trnV-GAC gene − 136321 136392 72 Locate
rps12 gene + 137965 138755 791 Locate
rps7 gene + 138809 139276 468 Locate
ndhB gene + 139605 141762 2158 Locate
trnL-CAA gene + 142305 142385 81 Locate
ycf15 gene − 142646 142894 249 Locate
ycf2 gene − 142985 149794 6810 Locate
trnI-CAU gene + 149883 149956 74 Locate
rpl23 gene + 150116 150397 282 Locate
rpl2 gene + 150416 151898 1483 Locate
Status Available
Accession PQ059216.1
Length 151,992 bp
GC content 38.2%
Annotated genes 133
Gene sequence records 8
Translation Rna 37 Photosystem Ii 15 Other 15 Ribosomal Protein 26 Atp Synthase 6 Rna Polymerase 4 Cytochrome 6 Photosystem I 5 Nad Dehydrogenase 12 Ribosomal Rna 8
SSR 0
Direct 0
Inverted 2
Palindromic 0
Sources and evidence boundary Accessions, release scope and coordinate evidence remain visible beside the visualization.
Full species sources